Gene detail

Detailed information of RMX44185.1 in Pocillopora damicornis

Genomic Location: SczhEnG_3058:309040...318789
NR annotation: no NCBI-NR hit recorded
Species abbreviation PDAMI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00002494

ATGACGTACAGATTATGTTCGCGAGGAGTGAGCTCCTTGTTAACTCGGGCAACTCTGAGACTCTCACATCCTCAGTTGGCGCGGTACTCGTTTGGAGCAAAGCAATTGTTGCTGAGTCACAATGCAAGGAACTCTTGGTTACTTGGAAGAATTCTGAATTTTGATCCACCAAAGGGATTTGAAAAATTTTATCCAAATGCATCAAAGAAGACATCAAATAAAGACTCTAGTAAGAAAGAGAACTCGGATGTGAACAAGAGGGAAGCATCAGGGGGTGATGATGGTGGTGGAGGAGGGGGAGGGAGCAGTGGCAAACCACCTGGCGATGACTGGTGGAAGACCCTCTTCGAAAATAATCCACAGGCTTTGATTGGTGGTGCAGTAGCTGCAGTCTTAGCTTTGTTATTTCTGATGTCTGAAAGGGACACTAGAGAAATAAACTGGCAAGAGTTCAGAACAAAATATCTTGAAAGGGGAGAGGTGGAAAAACTTGTTGTGTCAAACCAAAGTCTTGTGAAAGTTTTTCTGAAGAATGACCCCAACAAGAGTCAGCTTTGTTTCACGATTGGAAGTGTTGAAAGCTTTGAGCGCAGTTTGGAGGCTGTTCAACAAGAGATGAACATTGATCCTGCATTTTGGATCCCAGTGACATATGTGAAGGAGTCAGAGTGGCTGAAGGAGATCATCAAGGCAGCTCCATCACTGCTGATTATCGGTGTCATAATTTACTTCAGTAGGAAACTTTCCAGTGGCAGCAGAGGACAAGGGGGTATATTTGGTGTTGGGCAGTCAACAGCCAAATTCTACAATAAAGAAACAAGTGTCAAAGTCAGATTCAAGGATGTTGCTGGATGTGAGGAAGCTAAACTGGAAATAATGGAATTTGTGAATTTCCTTAAAAATCCTCAACAGTATCATGAGTTGGGGGCCAGGATACCCAAGGGTGCTATATTATCAGGGCCACCAGGTACAGGCAAAACTCTGTTAGCCAAGGCAGTGGCTGGGGAGGCCAGAGTACCTTTTCTAAGTATTTCAGGATCAGAGTTTTTGGAAATGTTCGTAGGAGTTGGGCCAGCCAGAGTCAGAGATCTGTTTGCCCAAGCAAGAAAGAATGCACCCTGCATTATATTTATTGATGAGATTGATGCTGTGGGCCGTGCACGCGGCCGTGGTGGTCATATTGGTGGGCATGACGAACGGGAGAACACCCTCAATCAACTGCTGGTGGAAATGGATGGTTTCAGTTCATCAACAAACGTAGTGGTACTATCTGGTACCAACAGACCCGATATCCTCGATCCTGCTCTGCTAAGACCCGGCCGTTTTGACAGACAGATCCATCTGCCTCCACCAGATATCAAGGGAAGATGTTCTATTTTTAAAGTACACTTGAAGCCTCTGAAGACAGAACTGAATCTCGATCAAGTTGCGCGAAAAATGGCGGCACTCACTCCAGGATTTACAGGAGCTGACATCGCAAATGTTTGTAACGAGGCTGCCCTCATTGCTGCGAGGCATCTTATGCCAAAGGTGGAGTTGACGCATTTTGAACAAGCCATTGAGCGTGTTATTGGAGGTCTGGAGAAAAAAACTCAAGTTTTACAGCCGGAGGAAAAGAAAGTTGTAGCGTACCATGAAGCGGGTCACGCAGTGGCCGGATGGTTCCTTGAACATGCCGATCCTCTTCTGAAGGTTTCAATAATTCCAAGAGGCAAGGGTCTCGGCTACGCGCAGTACCTCCCCAAGGAACAATACCTTTACTCGACTGAACAGCTGTTAGACCGTATGTGTATGACGTTGGGAGGACGGGTTTCCGAACAGATCTTCTTTGGACGAATAACCACCGGTGCCCAGGACGATCTCAGTAAAGTCACCAAGAGTGCTTATGCGCAGGTTGTGACATTTGGAATGAATGAAAAGGTTGGAAACGTGTCTTTTGATTTGCCCCGCGAGGGAGAACCTACTTTTGATAAACCTTACAGTGAGGCGACTGCACAGCTCATTGACGAACAGGCCAGAGATGTCATCAACAACGCGTACAAAAGAACATTTGATCTGCTCACCAAACACAAAAAAGATGTAGAAAAGATTGCCTTACGACTTTTGGAAAAAGAAGTTCTTGACAGAGAAGACATGATTGACCTGTTAGGTCGCAGGCCTTTCAAAGAAAAGTCGACTTATGAAGAATTCGTCGAGGGAACTGGTAGCGAAGTAGAAGATACTAGTCTCCCCAAAGGCTTAGAAGGACTGCAGGAGAATGGGGACGAGGAAGAGGCCCCTTCAACCACCATACCCACTTAG

Transcript

rna-pdam_00002494

TTGCGGAGTTGCCACCGCGCCTCCTGTTTTTAtatccgccatcttggatcGTGAGTTGCATAAGACAAAATGTCAGCAAATCGTTCCCAGTGATGTACGGAACACGTTGGGTTTTATTCTAGTATGTTTATAACATTTAGTTCCAAAAGTTTCAAATACTAGGCTTTTTGAAGCAATGACGTACAGATTATGTTCGCGAGGAGTGAGCTCCTTGTTAACTCGGGCAACTCTGAGACTCTCACATCCTCAGTTGGCGCGGTACTCGTTTGGAGCAAAGCAATTGTTGCTGAGTCACAATGCAAGGAACTCTTGGTTACTTGGAAGAATTCTGAATTTTGATCCACCAAAGGgatttgaaaaattttatccaaaTGCATCAAAGAAGACATCAAATAAAGACTCTAGTAAGAAAGAGAACTCGGATGTGAACAAGAGGGAAGCATCAGGGGGTGATGATGGTggtggaggagggggagggagcAGTGGCAAACCACCTGGCGATGACTGGTGGAAGACCCTCTTCGAAAATAATCCACAGGCTTTGATTGGTGGTGCAGTAGCTGCAGTCTTAGCTTTGTTATTTCTGATGTCTGAAAGGGACACTAGAGAAATAAACTGGCAAGAGTTCAGAACAAAATATCTTGAAAGGGGAGAGGTGGAAAAACTTGTTGTGTCAAACCAAAGTCTTGTGAAAGTTTTTCTGAAGAATGACCCCAACAAGAGTCAGCTTTGTTTCACGATTGGAAGTGTTGAAAGCTTTGAGCGCAGTTTGGAGGCTGTTCAACAAGAGATGAACATTGATCCTGCATTTTGGATCCCAGTGACATATGTGAAGGAGTCAGAGTGGCTGAAGGAGATCATCAAGGCAGCTCCATCACTGCTGATTATCGGTGTCATAATTTACTTCAGTAGGAAACTTTCCAGTGGCAGCAGAGGACAAGGGGGTATATTTGGTGTTGGGCAGTCAACAGCCAAATTCtacaataaagaaacaagTGTCAAAGTCAGATTCAAGGATGTTGCTGGATGTGAGGAAGCTAAACTGGAAATAATGGAATTTGtgaatttccttaaaaatccTCAACAGTATCATGAGTTGGGGGCCAGGATACCCAAGGGTGCTATATTATCAGGGCCACCAGGTACAGGCAAAACTCTGTTAGCCAAGGCAGTGGCTGGGGAGGCCAGAGTACCTTTTCTAAGTATTTCAGGATCAGAGTTTTTGGAAATGTTCGTAGGAGTTGGGCCAGCCAGAGTCAGAGATCTGTTTGCCCAAGCAAGAAAGAATGCACCCTGCATTATATTTATTGATGAGATTGATGCTGTGGGCCGTGCACGCGGCCGTGGTGGTCATATTGGTGGGCATGACGAACGGGAGAACACCCTCAATCAACTGCTGGTGGAAATGGATGGTTTCAGTTCATCAACAAACGTAGTGGTACTATCTGGTACCAACAGACCCGATATCCTCGATCCTGCTCTGCTAAGACCCGGCCGTTTTGACAGACAGATCCATCTGCCTCCACCAGATATCAAGGGAAGatGTTCTATTTTTAAAGTACACTTGAAGCCTCTGAAGACAGAACTGAATCTCGATCAAGTTGCGCGAAAAATGGCGGCACTCACTCCAGGATTTACAGGAGCTGACATCGCAAATGTTTGTAACGAGGCTGCCCTCATTGCTGCGAGGCATCTTATGCCAAAGGTGGAGTTGACGCATTTTGAACAAGCCATTGAGCGTGTTATTGGAGGTctggagaaaaaaactcaAGTTTTACAGCCggaggaaaagaaagttgtAGCGTACCATGAAGCGGGTCACGCAGTGGCCGGATGGTTCCTTGAACATGCCGATCCTCTTCTGAAGGTTTCAATAATTCCAAGAGGCAAGGGTCTCGGCTACGCGCAGTACCTCCCCAAGGAACAATACCTTTACTCGACTGAACAGCTGTTAGACCGTATGTGTATGACGTTGGGAGGACGGGTTTCCGAACAGATCTTCTTTGGACGAATAACCACCGGTGCCCAGGACGATCTCAGTAAAGTCACCAAGAGTGCTTATGCGCAGGTTGTGACATTTGGAATGAATGAAAAGGTTGGAAACGTGTCTTTTGATTTGCCCCGCGAGGGAGAACCTACTTTTGATAAACCTTACAGTGAGGCGACTGCACAGCTCATTGACGAACAGGCCAGAGATGTCATCAACAACGCGTACAAAAGAACATTTGATCTGCTCaccaaacacaaaaaagatgTAGAAAAGATTGCCTTACGacttttggaaaaagaagTTCTTGACAGAGAAGACATGATTGACCTGTTAGGTCGCAGgcctttcaaagaaaagtcgACTTATGAAGAATTCGTCGAGGGAACTGGTAGCGAAGTAGAAGATACTAGTCTCCCCAAAGGCTTAGAAGGACTGCAGGAGAATGGGGACGAGGAAGAGGCCCCTTCAACCACCATACCCACTTAGTCGCACGAAGGAAAGGAGAGGAACTTTTAAAGAAGGGCTGAAGTAGCTTAGATATTTCGAGCAACTACTGTGTCAACTTTTCATCATGTACAAACCAGGATGGATTTGCATCTGTCCTCAATGTTTGAATTCTATTCCCAGGGAGTGAAGCTGAACATCAGCTAAAATAAGCTATGGACATCATCACTATGGTTAAATGttaactttgtaaatttttgaaaaataaaacgatatGAATTGATA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF06480 all species →	FtsH_ext	FtsH Extracellular	Family	Interproscan
PF17862 all species →	AAA_lid_3	AAA+ lid domain	Domain	Interproscan
PF01434 all species →	Peptidase_M41	Peptidase family M41	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR037219 all species →	Homologous_superfamily	Peptidase M41-like	Interproscan
IPR003960 all species →	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011546 all species →	Domain	Peptidase M41, FtsH extracellular	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR041569 all species →	Domain	AAA ATPase, AAA+ lid domain	Interproscan
IPR050928 all species →	Family	ATP-dependent Zinc Metalloprotease	Interproscan
IPR000642 all species →	Domain	Peptidase M41	Interproscan
IPR005936 all species →	Family	ATP-dependent zinc metalloprotease, FtsH	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43655 all species →	ATP-DEPENDENT PROTEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0004176 all species →	Molecular Function	ATP-dependent peptidase activity	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005745 all species →	Cellular Component	m-AAA complex	Interproscan
GO:0034982 all species →	Biological Process	mitochondrial protein processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08956	AFG3; AFG3 family protein	EC:3.4.24.-	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.