Gene detail

Detailed information of RMX44510.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2986:226749...243010
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00006044

ACGCCATATTGGATCGCACCAACTCCCGAACAGGCAACTGGGAATTTTATTGCATCACCTTGGCAGTTTGATACTTCCATGTGGAAGGGCGCTCTAAGGAAGAGATTCCCTGGGTTTTCCGCCTTTCACGTTGGCAAATTTACCTATCCTAAGTTATCTTTGTGGCGTGCGCTCTGTGGTTTTGATCACAACGATTCGTCTTCAATGGCCGCTGGAGCTGCCGAACAGCATGACTTTCCCAAAGAGGaggaaaatgtattgaaactTTGGGAGAAGTTGGATGCCTTTCAGTCGTGCTTGCGCCAATCAAAGGACAGACCAAGgTACAGTTTCTATGATGGTCCCCCTTTTGCCACAGGCTTGCCTCATTATGGACACATCCTAGCTGGTACTATAAAGGACATAGTCACAAGATATGCTCATCAGTCTGGTTATCATGTTGAGAGACGTTTCGGATGGGACTGTCATGGCCTTCCAGTGGAGTATGAAATAGACCAGAAGTTGGGTATCAAGAGTCCAGATGATGTGACAAAAATGGGAATAGCTAATTATAACAAAGAGTGTCGCCAAATTGTGATGCGTTACTCCAATGAATGGGAGTTCATAGTCAAGAGAATGGGACGATGGATTGATTTTGACAATGACTATAAGACACTTTATCCATGGTTTATGGAGTCTGTTTGgtGGACATTTAAACAGATTTATGAAAAAGACTTGGTCTATAGAGGATTTAAGGTTATGCCATATTCCACAAGATGTAACACTCCATTGTCAAACTTTGAAGCAAATCAAAACTACAAGGAAACTATGGATCCATCTGTGATTGTGGACTTCCCTTTGGATGACGATGCTAATGTCAGTATGATTGCTTGGACAACAACCCCGTGGACACTTCCTAGTAACCTCGCTCTTGTCGTAAACCCTGACATGGACTATGTGAAAGTCACAGGTACTGTGAAAGTGTGTACAGTTTGTTCATTAATGCAACACAGAGGGCAAAGTAAGACCTTTACACTGAAGTGAGCAatagttgtatttttttgttgcagtAATGTTTTACTTGCTTTtctattctttctttctgcagACAACACTACAAACAGAGTTTATATCATGATGGAAGCTAGGCTTGAAGCACTTTTCAAAAAGCCAGAGGAGTACACAGTTTTAGAAAgATTTAAAGGATCTAGCCTGGAGGGAAAGACTTACAAACCtctttttacatattttcaagATctCAAGGCTAGTGGAGCTTTCAGGGTGTTAGCAGATGGCTATGTAACAGGTGAAAGTGGAACTGGAGTGGTCCATTCTGCACCAGCCTTTGGCGAGgatGATTACAGAGTCTGTTTGGCAAGTGGAATTGTTAAAAAGGGTGGAAAACTTCCTTGTCCTGTAGATGCAAGTGGAAAATTCACCAGTGAAGTGTCTGATTTTCAAGGGCAACATGTCAAGGATGCTGATAAGGTCATCATGAAGTGGCTCAAGCAGCAGCAGAGACTGGTTCACCAAAGTACTCATAAACATAGCTATCCATTCTGCTGGAGGTCTGATACACCGTTGATTTACAAGGCTGTTCCTGGCTGGTTTATCCAAGTTGAATCTCTTGTTGACAAGCTTTTGGCCAATAACAAACAGTCCTATTGGGTGCCAGAATTTGTACAAGAAAAACGTTTCCACAATTGGCTTGAAAATGCCCATGACTGGAATATATCTAGAAACCGTTACTGGGGCACACCAATTCCTCTGTGGGTCAGTGATGATTATCAAGAGGTTGTTTGTGTTGGATCCATCGATGAACTGGAGCAGTTGTCTGGTGTCAGAGTCAGTGATCTTCACAGAGAAAGTGTGGATGACATTACAATCCCGTCTAAAACAAATAGAGGAGTTCTTAGAAGAGTCCCAGAAGTGTTTGACTGCTGGTTTGAAAGTGGAAGtatgCCCTATGCACAAGTCCATTatccatttgaaaataaagaagcaTTTGAAGCATCATTCCCAGCTGATTTCATTGCTGAAGGAATTGACCAGACAAGAGGATGGTTTTATACTCTTCTGGTGATTTCAACAGCATTGTTTAATAAACCCCCCTTCAAGAATCTCATTGTTAATGGACTGGTTCTTGCTGCAGATGGAGCCAAGATGagcaagagaaagaagaactATCCTGACCCAATGGAGATTGTGAACAAATATGGAGCAGATGCTCTTAGattgtATCTCATCAATTCACCAGTGGTAAGAGCAGAAACTCTCAAGTTCCAGGAGAAAGGAGTGAAGGATGTCATTAAAGATGTGTTCCTTCCATGGTATAATGCTCACCGATTTCTGTTGCAGAATATTCAGCAAATGGAAAGGGacggaaaaaagtttgttcATGATGAAGAGGTTCTGATGAATTTGGGCAACACACTTGATCGCtggatcatttcctttactcaaAGTTTGGTGTTGTTTGTCCACCAAGAAATGGCAGCCTATCGACTGTACACTGTTGTTCCTCGGCTGGTCAAGTTCATTGACTATCTGACCAATGTGTATGTGCGAATGAACAGGAAGAGACTCAGGGGGGAGTATGGGGACAAGGATCGTTACGAGTCACTTCAGACGCTGTTCAGTGTTGTATTTACCATCACAAGGTTAATGGCGTCATTCACTCCATTTCTTACAGAGTTCAATTATCAGTCTTTGCGGCCTTTCATACCAGAAAGTATGAAAATCGGAGAAACAGAGAGTATCCATTATTTGATGATCCCTAAGGCCAGGGAAAATCTAATTGACAAAGAGATTGAGAGAAGAGTAGCCCTAATGCTAACAGTGATTGAACTTGGCCGAGTCGttagagagagaaaaactcTTCCGTTGAAGTATCCCCTCCCTGAGCTTGTCGTCATTCACCAGCTGCAACAGACCCTTGATGACGTGTTATCTCTGGAAGACTATATCAAACAGGAAGTGAATGTGAGAAAGTTAACAGTGTCATCAGACAAAAACAGGTTTGGGGTTCAACTCAAAGCTGAGCCTGATAACCAGACATTGGGGCGCAGATTGAAAGGTGCCTTCAAAGAAGTGTCTCAGGCAATTAAAGgtCTTTCAGACCAGGAAATACAAGTGTTTAAAGAGAAAGGAGAGCTGATGGTGGCTGGGCACTTACTGAGTGGAACAGATTTAAGGGTGATATACTCATTTGATCAGAATGGATCAGCGCCGTCAGCATATGAAGCACACTCTGATGGAGAGGTACTTGCTCTTTTGGATATCACCCCGGATCAGTCTTTGCTCTCTGAGGGTGTGGCACGGGAAGTGGTCAATCGAATTCAGAAACTGCGGAAAAAGGCAAGTGCAGCTAGTCTCAGTGACACCTTGACTTCTGGCTTTTTAGCTCAACTTCAGCCATGCGACGACATCACCATTGTGTTTGACGTTACACAAGGCATGttagatgacgtcatcagtGAACACAAAGGTTACATTGAAGATAGTGTTAAGCAACCTGTTGTGTCCAGTTCTCTCGCACCGAGCTTGCCTCTAATAATTTCCGAGAAAACAGAGGTTAAAGGTAGTATGCTTGATCTGAAGTTGTTGAAAGGTCATCAGACTGCAAACAAGGAAATGACTGTTGGAGAACCGCTGTGCAAATTTGTAAACGTACTGCTGTGTAGAGGTGGAGCTGGGGTAGTTAAAGGAACTGTACTTTTGGAGAATCCTCAGGGCAGCCCGGTCATttcattggatcaacttaaGCGACAGGTAGCCGTAATGTTTAGTCAACAGGAGAGTGCTTTGAAACTGTCTTTGTCGCCAAAATGTGAATCAGttgttACCGACAAAGACATGTCCAAATTGCATGGCTCTCAATTGTACGCTTACGTCACAGGCTGAGTTCGGCCATTTCGAATCTTGTTTTCAGTAGTTTAGTGTATTTCTGTTGGCGTCAACACCTGACAGCTAATTTTCCCGAGTCACcatctgttaatttttttcacctgcaGTAGGCCCAATAgtgttttgaatgaaaataaaggttGATGTCCATGACATTTTTGTCATGTAAATTGTCCCACtcaaaacctttttctttcaacaataTCCTAAAATTGCCTTTCTAGAGAATCGTGAGAATGTAGcttaaatttgataaattatcttctctttgataaaaaaagcaaacacgtgaacacaaatttaacaaaaaacaaacacgtGTGTTAATTACTGTTCCCTTCTAAAAGACAATTAAATAGCTAAACAGCACGGTGCATGTGCCAACGATGATGGAACCACATTCTTTCCATGGAAATAAACAAGAGGAGAAGAACTATCTTGTGCGAAATTTTTCCGTTTGAGATTTCGTTTAACAAATATGACGGCACTCAGTAGTTTGATACTTAGTGGGAATtcgttttccctttttgttaGCGTTAATTCTAGCATTTAGTCTAAACGATGAAAATCTGAACATTTGTAGAAGTGCTACACGTTTCgtaaaaatctttctttgaattttcccCACTACCTGactgtttttggaaaaaaaagttgtttttagaGTTAttcaataaacaaagtaaactCAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00133 all species →	tRNA-synt_1	tRNA synthetases class I (I, L, M and V)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001412 all species →	Conserved_site	Aminoacyl-tRNA synthetase, class I, conserved site	Interproscan
IPR009008 all species →	Homologous_superfamily	Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR002300 all species →	Domain	Aminoacyl-tRNA synthetase, class Ia	Interproscan
IPR002301 all species →	Family	Isoleucine-tRNA ligase	Interproscan
IPR023586 all species →	Family	Isoleucine-tRNA ligase, type 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42780 all species →	SOLEUCYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0002161 all species →	Molecular Function	aminoacyl-tRNA editing activity	Interproscan
GO:0004822 all species →	Molecular Function	isoleucine-tRNA ligase activity	Interproscan
GO:0006428 all species →	Biological Process	isoleucyl-tRNA aminoacylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX44510.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.