Gene detail

Detailed information of RMX44516.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2986:264694...278946
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00006048

ATGGCGGAACTATCGCCTGAAGAGTTCAAGAAGAGTCTCTTCACGACTTTCCGAAGTCGTGGAGTGCTAGAGGCCCTGAAGTCTCAACTTAGGAATCGTCTAATAAAAGAACTTCAAGAAACTGCTGGCAAGGATGATTTGGCAGAATTACATGGTCAGTCAGAAAATACAGAGACTGTCTGTAAACTTGCTGCTAACAGCCTTGTTGCTGACCACTTAAAGAGATGTAATTATGAATATTCTTTATCTGTCTTCATGCCAGAGAGTGGTTTACAAGAACATAAGTTACTTACAATGAGGGATATCCTCTTACTGCTAAAAATTAGAGAAGGTTCTGAGCTCTACAAGAATATGGAAATTGTATTGGATAAACATGGATCATCAAATGGTTTGTTGGTAGAATTCTTAAGTGCCCTAGGTGTGTCGAATGATCATGGAAAGTCTTCAAAAGCTGTTCAAGCTTCCTTAAAGCAACTTTCTTCAATAGAGGATAAACTGCAAAGTGTGGAAAGACAGTACCTCAAAAATCTTCAGACAGAAAATCAGAAATGGAGTTCTCAGACTGAAAAGTGGCTGCTTGGATTGCACAAACAATGGGAACACGACAAGAAAAAACTGCTTGAGGAGGAGCTTGGGTACCTGAAAGCAACAGAACTTGCTCGTGTAAGGTTCGAAGAGAAGGAAAAATATCAAAGAGAAGTCCAAACCATAAGAAAACAGCTTGAGGAAAAATATGCAGCCAAGGCAGAGAAATTAAAAGCCGATGAGAGAGAAAAGTTACAGTTACTGAGCACTCAACAACAGCTTCAGGAAGAAGAAGCACACGCGCAACGACAGAAACTCCTGGAAGATATGTTGTCTCTCAAACAACGGGAAACTGAGTTTGATTTAAACCATCAAATGAAAGCAAAAACATTGAAGCTCGAAGAAGAGAGGATAAACGTTTTATCTCAGGAATTAAAAATCAAGAAATCTCTTTTAGAAGATGCAGAGGCCAACTTTAATAGAAGACTAGATGAAGAAGTACAGAGGTACAAATTAAAATGTGACGAAGAATCTCACGACAGAAGACAAACTCTAGAGCTCAGAGAAAAACGGCTACAACGAGATTTGGATGGTTTCGAGAGAAAGCAAGGTGTTTATATAAACACCTCTGACGAACTGCAGAGAACCAAAGGAAAATTAAAAGAATTACAAATTCAACTTGATGATAACAAGACACAACTTGCTTTAGCTCTCCAGCAAAAGGAAATGATGAGTATAAAGCTGAGCGAGGATCTCGAGGCGATCAAAGAAAGAGATGACGCTCTTGCCAAGGAGAATGCAATATTGAACAGAAACTTGTTGAAGTATGAAGATGAAGAGAAAGGAAACCAAAGACTAATCAGCGAATTAAGGGAAAAATCAATGGAGTCTGCTGCAGACCTACTACATCTACGAGATCAGTTAAAACAAATGGAGAAAACCGCCAAGTCGAAGGAAAAGTCTTGGAAAGATTATAAAACAAAGATGGAATCCAGACTGGATGAAGAGTGTCAGAAGCGACTTAAGTATCAACAACTTTATGAAGAAACGATGATGAGTCAGTCTGCGCTCAATCAAGAGGTAGCCGACCTAAAACTTACTTTGCAACAAACGCAGCAAGTGCTCGATGTGGAACTTGGCCGAAGAAGAGCAAACTCCATCCCTTGCATGGAGTCCATGCCAAGCGAACTTGAGTCCCCGGCAGTAAATACAACTCAATGGGAAGGTGATAGAACATCAGTGACAGACTCGGCTATGGACGAAACCAGTAGCACTGTGGTTATGATAGCCCAGAGCAAGGAACTGTTTGATCGGCTGGAGAAGGAGGCCAAGGAGTTGGAAGAATCCTATCAGAAGTTCCAGTCGCGAATCAACCAAATGGAACTAGATGTTCACTCAACGTCTCGTTCACCTGATTTACATTATCCCACTCAAAACCTCCATGGAAATACGTCATTTGATTAA

Transcript

rna-pdam_00006048

GTTTAAAAACAGACAAGATGGCGGAACTATCGCCTGAAGAGTTCAAGAAGAGTCTCTTCACGACTTTCCGAAGTCGTGGAGTGCTAGAGGCCCTGAAGTCTCAACTTAGGAATCGTCTAATAAAAGAACTTCAAGAAACTGCTGGCAAGGATGATTTGGCAGAATTACATGGTCAGTCAGAAAATACAGAGACTGTCTGTAAACTTGCTGCTAACAGCCTTGTTGCTGACCACTTAAAGAGATGTAATTATGAATATTCTTTATCTGTCTTCATGCCAGAGAGTGGTTTACAAGAACATAAGttacTTACAATGAGGGATATCCTCTTACTGCTAAAAATTAGAGAAGGTTCTGAGCTCTACAAGAATATGGAAATTGTATTGGATAAACATGGATCAtcaaatgGTTTGTTGGTAGAATTCTTAAGTGCCCTAGGTGTGTCGAATGATCATGGAAAGTCTTCAAAAGCTGTTCAAGCTTCCTTAAAGCAACTTTCTTCAATAGAGGATAAACTGCAAAGTGTGGAAAGACAGTACCTCAAAAATCTTCAGACAGAAAATCAGAAATGGAGTTCTCAGACTGAAAAGTGGCTGCTTGGATTGCACAAACAATGGGAACACGACAAGAAAAAACTGCTTGAGGAGGAGCTTGGGTACCTGAAAGCAACAGAACTTGCTCGTGTAAGGTTcgaagagaaggaaaaatatcaaagagaaGTCCAAACCATAAGAAAACAGcttgagGAAAAATATGCAGCCAAGgcagagaaattaaaagccgATGAGAGAGAAAAGTTACAGTTACTGAGCACTCAACAACAGCTTCAGGAAGAAGAAGCACACGCGCAACGACAGAAACTCCTGGAAGATATGTTGTCTCTCAAACAACGGGAAACTGAGTTTGATTTAAACCATCAAATGAAAGCAAAAACATTGAAGCTCGAAGAAGAGAGGATAAACGTTTTATCTcaggaattaaaaatcaagaaatctCTTTTAGAAGATGCAGAGGCCAACTTTAATAGAAGACTAGATGAAGAAGTACAGAGgtacaaattaaaatgtgacGAAGAATCTCACGACAGAAGACAAACTCTAGAGCTCAGAGAAAAACGGCTACAACGAGATTTGGATGGTTTCGAGAGAAAGCAAGGTGTTTATATAAACACCTCTGACGAACTGCAGAgaaccaaaggaaaattaaaagaattacaAATTCAACTTGATGATAACAAGACACAACTTGCTTTAGCTCTCCagcaaaaggaaatgatgagtATAAAGCTGAGCGAGgatCTCGAGGCGATCAAAGAAAGAGATGACGCTCTTGCCAAGGAGAATGCAATATTGAACAGAAACTTGTTGAAGTATGAAGATGAAGAGAAAGGAAACCAAAGACTAATCAGCGAATTAAGGGAAAAATCAATGGAGTCTGCTGCAGACCTACTACATCTACGAGATCAGTTAAAACAAATGGAGAAAACCGCCAAGTCGAAGGAAAAGTCTTGGAAAgattataaaacaaagatGGAATCCAGACTGGATGAAGAGTGTCAGAAGCGACTTAAGTATCAACAACTTTATGAAGAAACGATGATGAGTCAGTCTGCGCTCAATCAAGAGGTAGCCGACCTAAAACTTACTTTGCAACAAACGCAGCAAGTGCTCGATGTGGAACTTGGCCGAAGAAGAGCAAACTCCATCCCTTGCATGGAGTCCATGCCAAGCGAACTTGAGTCCCCGGCAGTAAATACAACTCAATGGGAAGGTGATAGAACATCAGTGACAGACTCGGCTATGGACGAAACCAGTAGCACTGTGGTTATGATAGCCCAGAGCAAGGAACTGTTTGATCGGCTGGAGAAGGAGGCCAAGGAGTTGGAAGAATCCTATCAGAAGTTCCAGTCGCGAATCAACCAAATGGAACTAGATGTTCACTCAACGTCTCGTTCACCTGATTTACATTATCCCACTCAAAACCTCCATGGAAATACGTCAtttgattaaacaaaattaaaattttttaaaatctcttgtCTTCTTAAGTTTCACACTAATGCCATATGAACAGAGGTAGCTTTGACAGAACGCGTCATGTGCGCGCGCTGTTGTCTCACATTTCGCCaagttaactgttgtttttataatggtaataggaccgagtggagtcctattcggtctgtaatc

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16045 all species →	LisH_2	LisH	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006594 all species →	Conserved_site	LIS1 homology motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR39063 all species →	ORAL-FACIAL-DIGITAL SYNDROME 1 PROTEIN HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0036064 all species →	Cellular Component	ciliary basal body	Interproscan
GO:0060287 all species →	Biological Process	epithelial cilium movement involved in determination of left/right asymmetry	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16480	OFD1; oral-facial-digital syndrome 1 protein	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.