Gene detail

Detailed information of RMX44660.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2978:270949...281273
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00002721

CTTTAGCTGGCAAAAGCGCGTGATTTTGAACAACAAGATGTCCGTGAACTGGTGTAAATTGAGTCACTTTTCTACGTTGTTTTCATGGGATTTTGGCTTGCAAAGGAGGCTTGTTTTGGACGCTGTTTAAGATCGATGCATCTTACAGGGGAATTTCATCTTTTATGGAGAAAATAATTACAGTTAAGCAAGAACCTATTGATGATGCATATCCAACACCACTAtcaaccacaacaacaacaacaaaaacaacagcatCAACTACCAGTATCACAACAGCAGCACAGAATGTAACCACAAAAACCACAGCTGTGGTCACCATACCTTCAGGAACGGTGGTAACAGGAACAGGACCTGTAACAACTGTGCCTGCATCAGaacctcaaatatttttcatacagCCCAAACCAGAAGTTCAGAAACAGCAATGTGCTGGTACACAAGCTACTACTATAGCAACAACAGTGGCAAGGACGATTACAACAGCTGCCCAGTCAAAGCCTCCCTTAGTAGTCATTTCTGGTAGTCCCATTAAGCTGACACCCTTATCAAGAGGAGGTGCAGCTCTTACAGGTGCACAGACAAACTCCAGTTCCACTGGCAATATAACATGCACTTTAGTTCATGTACAGCCATTTACAAATAAACAGCACATTGCTCCTAAAACAGGAAGTTCTCCAAGCAAGCAAACTATTCCAGTGCAGCTCCAAAAATTGGTCCCCATTAGTGTTGCAACTTCATCTTTGACAAAGGTACAAACAGGCACGGCCCCTCAATTCACAATAGCTGCACCTGCTGGGTCTGTCTCTGGCATGCGGCACATTGCTCCCAAAGTGAACCTTGTATCAGCAGTTCCAACAGGACAGGCTGTTCAATTAACAACACCTACAGTGCAAGTCAGAAACATTGCTCCTGCTGTGGAGAAGACTGCTCAAGTTCCTCAGCAGCTGGCACCAAAGCCAGTCCAGACTCAAGTAGCCAGCGGTGGTCAGCAACAAAGACTCATTGTCCCAGCCTTGCCTTCTACATTACCTCAGATAGCAACAACAGGAGCTTCAGGCAGCCTTCAGTTTCCCCATGGTGTAATTAGTGGTGGGGTAGTTTATCTCCCTCAGCAAGCTCTTGCTTCTGGAGGTTTTCCTATTGCAGTACCTTTACAGGCTAATGCCATTAATACTCAAGCACAAGGAGGAATGACTGTTAATGGCAGTTCTCCTGAATCATCACCTCCCAACAGACCTCGGAAGCCTTGTAACTGCACAAAGTCACAATGTCTTAAATTGTACTGTGATTGTTTTGCAAATGGAGAATTCTGTAGCAATTGTAATTGTGTCAATTGCTCTAACAATATGGACCATGAAAAGGAGAGGAGCAAGGCCATTAAGGCTTGTTTGGAGAGGAATCCTCAAGCTTTTCACCCTAAAATTGGTAAAGGAAGGggTGATTCTGATAGGCGGCATAACAAAGGTTGTCATTGTAAGCGTTCAGGATGCCTCAAGAACTACTGTGAATGTTATGAgGCCAAGATTTTATGTACAAATCTTTGTAAATGCACAGGATGTAAGAATTTTGAGGAAAGTCCCGAGAGGAAAACTCTCATGCACTTAGCAGATGCTGCAGAGGTTCGTGTAAAGCAACAGAATGCTGCCCGAACCAAGTTGGAATCTCAAATAGAAGACCTCCCATCCCGCCCAACTTTCTTAACAAACTCTGGAGAAAGactTCCCTTCTCGTTTGTAACAGATGAAGTGGTACAAGTAACCTGTCAGTGTCTCCTGGAGCAAGCCTCAGAGGCAGAAAATCTGGGACAGTCCCAGGCAGAGATAGAAAAAATGATTCTTGAAGAATTTGGCCGGTGCTTGCTGCAGATTATCCACACGGCGAATGGGACGAaagAATGATTCCTGTTCTTGGTCGTCCAGCCAATCCTGCGTGCAGGGACTGCGTTTAAGTTATCACCCATTTGCGGATTTTATTATGTCTTTTTTCCGGCTCTGGAAACTAGACATCGTCGTCTGAATTTTTAACTCGTACCTATAGTAGTGTAAATAGAAAGTTTGCAACATTTTCGCCTGTTAACAATTTTGAACGCTCAGTGTAAATATAATGCTGTGTTGACTAAACTTGCTATCCTTGTGGTGCGCATGTTGCGCGGGACACCCGAGGGCCCTCTGAGGAAAACCCGTGGACACAAGAATCACTAGGAAACGTCTGGGACGTTAAAGAATTTTTATGGGATAGGCGTATGTGAGTTCTTGTAACTGATCTTCTCTGTACGTCATGTGTATTTCAACTCAATTCactgttgtttgttgttgtctaTCCAGGAATAAAAGTCTgttaatatatatata

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03638 all species →	TCR	Tesmin/TSO1-like CXC domain, cysteine-rich domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033467 all species →	Domain	Tesmin/TSO1-like CXC domain	Interproscan
IPR028307 all species →	Family	Lin-54 family	Interproscan
IPR005172 all species →	Domain	CRC domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12446 all species →	TESMIN/TSO1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21776	LIN54; protein lin-54	-	Cellular senescence	ko04218	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.