Gene detail

Detailed information of RMX44663.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2978:327288...332297
NR annotation: no NCBI-NR hit recorded
Species abbreviation PDAMI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00002728

CGGTGAACTTCTCCGCCATCTTGCGCATCTTCACTGCCGTCCGTTTGAAGTTTTCCCCACCGAAGCGACCCAAAATGGCGTACAAAGGACAGAAAGTGCAGAAAGTCATGGTACAACCTATTAGATCAAGAATTCAGATTTGGCTGTATGAGCAAGTGAACATGAGGATTGAGGGCCATATTATTgGTTTTGATGAGTATATGAATCTTGTTTTGGATGATGCAGAAGAAGTACATCTCAAAACCAAGAAAAGGAGACCTCTTGTTAAAGTGGTTAGATAGAAGGATATTGTTGAAAGGAGACAATATTACGCTCCTCATGAATACAGAACCCAGCTGATTAATGCATCATCCATGCATGTATTGAGCTGAAGATCAAGAGAAATGCTTTTTGGAACAgatttgatatttcttttagcCGTGAAACCTAGTAACACTACTGAAAGGGCTTGTAACCTTTGTTTAGAACTTTAAATGTAACTTTTGTACGTACAAGGCGTGacatttgtatttgtttgattATGAGTAACTGTAGCTATGAAGTTCTGCGCAATCGACCACTCACACCCAAAATGTAGAAGTCTCTCGACATTTGTTTTCATGCCAGTGCAATGTAAGGATGTCTTTTTTCCATGCCATATATCTCAACCTGCTTCAGTCTCATTTGTAAAGTTCATCGTTTTACTTACGctcagaaaaaacaatttgtatatgaagttttcttcattttaacgCACCGGATGCCAAACAACAGTAATTGTTCGATAGCTGAAAGCTCTTAACTGTGACATCTGACGTCTACATATAAAGGGAAGTGAGATATTTGTAGCTTGCCTTCGTTTCTGTTTCCCATTGCTTTAGTATTGGGCAAGATACTTccaagaaactttttttacacaTGACTCGTACCTTTGCAAAACACAAGTCggaaaatttaacaactaGCCTGGTTGCATAACCAAAACCTTTTCTCAAGATATTGAAATAACATTATCAACCCTTTTGATAATGGAGCCCTCATCTTAATGACTCGGAAAGAACAATTAgggcttttaaaaaaagtgtgttTGGGAAGCTTCCCGCGTGTTTATCCAATAGTTTtagtgaggtattttttttttatcgctgCCACTGTGCTCTATCTACAGTAAGAGATAAcatacaaatatttaaactCGCACGtgtattaaaacaatttacagtACTTCACGCGTTTTTATTAAGcaaacatcaaaattaaacCGCACTCAATCACATTGAGGTGCAATACTAGTTATAAGTCGCCAACAAGCTTTTAAATCGTAGTCACTGATGTGCTAATTAGATATGTCACCCAGGTCCACAGTATAACGTGGCTTTATTCTATTCCACGCATTGCCAAAGACAATTCACAAACAGAAACTTAGATTAAGGGAACATTCTTGGCTTGTGATTCGCGGAGACCTTTGAAGCATCTTCCCCTTTCGTTTTCcgtttaaaacttttgtaaCGACGTAAGATTACTTAGTCCGCGCTAATTTCACTTCACTCACGTTAAGAGATGTTAGATCGCCATGCCACCAGATCTGATGGAGGAATCCCTGTTTTTCGCTTGTTGTTATCGGTATCTCTTGAAAAGTAATATCCGCACGTGCTTTTGCCACTGGTGCTGAAAGGCGCTAACCTGTTTACATGTCTCATCCAGGGCACGGCTAGACTTTGAACTGGAATACCAGGTATTTTTTGCGTGTGTCGTCCGTTACTGGACTTTGTCGAGTACTCGGTGGTTGAACTGGCGAACGATTTCGAAGCTGCCTCTTTCAGGGCGTCAGAAACATGCCGCGAGTAAGGAGCTTGTGTGAGAATACCAGGCTGCTGATCCCATGAAGAGATTCGACAACAAACGTTGGTTGGCAACCAGACGGCCTTGAAGTCCTTTCGGCATTTTTCGCACTTCCAGCTCTGTCCAAATAACTGTCCAGTATTAGGCATTATACCCTGCACGTAAGGCTTTCAATGCGATCGGATCCAATAAAATGTTTCGCTGGCAAATCTAACCCTTCCTTTTTCTCCGTCGCTGCGCAATCGATTCTCACAATCGCAAACTCCAGTCGGGCTCGCGATGTCGAACGCGAAACGTAATCGATGTACTGACGTCATAATTGTC

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01423 all species →	LSM	LSM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027078 all species →	Family	Small nuclear ribonucleoprotein E	Interproscan
IPR001163 all species →	Domain	Sm domain, eukaryotic/archaea-type	Interproscan
IPR010920 all species →	Homologous_superfamily	LSM domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11193 all species →	SMALL NUCLEAR RIBONUCLEOPROTEIN E	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000387 all species →	Biological Process	spliceosomal snRNP assembly	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005681 all species →	Cellular Component	spliceosomal complex	Interproscan
GO:0005682 all species →	Cellular Component	U5 snRNP	Interproscan
GO:0005685 all species →	Cellular Component	U1 snRNP	Interproscan
GO:0005686 all species →	Cellular Component	U2 snRNP	Interproscan
GO:0005687 all species →	Cellular Component	U4 snRNP	Interproscan
GO:0034715 all species →	Cellular Component	pICln-Sm protein complex	Interproscan
GO:0046540 all species →	Cellular Component	U4/U6 x U5 tri-snRNP complex	Interproscan
GO:0071011 all species →	Cellular Component	precatalytic spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11097	SNRPE, SME; small nuclear ribonucleoprotein E	-	DNA replication proteins	ko03032	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.