Gene detail

Detailed information of RMX44673.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2978:725827...729530
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00002773

ATGCCTGATTGTCAGCAACTATTAGACTTCGAAGGGGATTCACAGGAAAATTGCCTGGTACGTTCACCAGAAAACAGAGGGACAATAACATTCTCAACGTCGGTAGCTAAGCTCGGCTCAAGGTCACTGAGATGGGAATCTGGCACCACAGGGAAATCGAAGTTGAGGTACACCAGGCCCCGATCTGCCCGCATCAGAGGAAGTGAACTAAGCCGAGGAGGTGTGAAGATGTGGATCTACAAAGAGACTCCCTCACCCGGAAGGAGCATGCAAGTTAGATTTAGAGATACTGCTCGGAACAACCAAGTTGGATCATTTGATATTAAATTGGGATTTAAGGGATGGCGAGGAATATGGGTGTCCTATGGAGAATGCAAACGTTACTCTCATAGCCTCGACTCCCCCGCTGCAATTTATAGAGTCGATTTTGTTTTGGGACATCATGACACAGTTCATATCGATATGCTTGAATTCGTGGGAGGAATGTCGATGCAGTCTCGCGATAAAATAGTTCCACCTTTCACAAGATTCGGCTCACGATACGACTCGAGCAACTTCTGGCAGCAAAGCTACCGTTGGAGTCAGCGAGCTCCGACTGCCCTTCCGGAAACGGTGGTTGCTTCAAAGTCCTTGAGTCTCACTCACACCGAAAGTCGCTTGAAAAACTGGTATTGCGATGAGAGGGAAACCACCTATGACTTCTCTGGAGAAGCCAAGAAGCGTTGGGATAAACTGGTGAGGAGCATTGACGCTGCATATCTGGAATACGATAGACTTTTATTTAGGACGCTAGACTCAGGGAAGAAAGTCATAGCCGGGCCTCCTTTGTTTTGTCGTGGTTGTGACAGGGGAACACGAGCGTATTCCAAGAAAGATCCAACAAGAAAGTTCAGCTTCGTCCAAATGCGTATCATTCTTCCTTTGGCGATAGAGTTTTATCTTAAATCCCGCGCCGAAGAAGTTTCCCGAACTGTGAAAGAAGAAACTCCTGAACTAAGTTCTACTAACAAAGTCGATGTGGACAGTGCCATTGAAAGGATTTGTGGAAAAGACGCAAACAGGCAGAAAGAGTTCCGCGATTACCTTGAAAGTTTGACGAAACCTTACACAAAGGACCAAATACGCAAAATATTGAATGACGAAAATAAAAAACGCCTTGAGAGAATAATCAAACTGCTTGACTACATTGAAGACCAAGGATGGGCTGATGGAAGTGCAATAGGCTCCCTGGATCATGAAATGAACCGTGGTGGTGCTGGGTACATGCACACTCTTTTCTTGCTGAAAGACACTTTGCACGGGGACGCTAAATACAGATCAAGACTTTTAAACCTAATAAACGCTGCCAAGTGGTTCAATGATTTTGGTGAAGTTTACCAATCGACGTTCGAGTTTAGCGGAACTACGGCTGACAGAATGATTACAATAATGTTGTTTCGGCTCATGATTGTGTTGATAATGCCTGCTAAGTCGGATATGGAAATAAAGGAAAGGCAGAGGGATATGGATGCTTTGAAAAGGTGGATGGATAACGCCCTGAGTATTAACAAAGCCTTCGGTGGAGTCATTAAACCTGATTATACTGGCTTTCATCACAAGACATTCTACGCATCTGCGTATGCCCCACACGCATATCATACAGCTGCGCAAGTACAATACCTCCTGGAAGGAACAGATTTTGCTCTGTCAGATGAGTCGAAACGAAATTTACTGGAAGCCCTTGAAACAATGAGGCTAGTAGCAGTTAAGTATTCAACACCAAACAGTGTCGGAGGACGCATTGTAGACTATTCTAAAAAGATTTTGGTAAAAATTCTCCCAGCATACGCTTACATCAGTGTTTCTCATCCATCTGGGCCACTGGCATCAACCCCAGCCAAAGAAGTCACAGTTCCTGCTGTTAGGAACGTTGGAATGTTTTTACGTTTGTACCAGCCCACCGACGAATCTATTAAAATGTATTTGGAAGATGGAACGGTTAGCAGGGGAAAATCATATATGAACAGCCTTGGATCACTGAAAATTATGTCGACCGTCTTTTCTAAAGGTACATCTCCTGAGCCCTCCCCTGAAGGTCACTGGTCCAAGAACTTTGCTGCTCTCTCAATTCATCGTCGTAAAGACTGGGCAGTGACGATAAAAGGCTTTAACCGGTTTGTCTGGGACTTTGAGGGATCTACAAAGATTAAAAAACCTGAAAATGTTTATGGTACCTATCAGAGTCATGGTTCAATGTTGATAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCTCAAATTTGATGCAGATTGTTAA

Transcript

rna-pdam_00002773

ATGCCTGATTGTCAGCAACTATTAGACTTCGAAGGGGATTCACAGGAAAATTGCCTGGTACGTTCACCAGAAAACAGAGGGACAATAACATTCTCAACGTCGGTAGCTAAGCTCGGCTCAAGGTCACTGAGATGGGAATCTGGCACCACAGGGAAATCGAAGTTGAGGTACACCAGGCCCCGATCTGCCCGCATCAGAGGAAGTGAACTAAGCCGAGGAGGTGTGAAGATGTGGATCTACAAAGAGACTCCCTCACCCGGAAGGAGCATGCAAGTTAGATTTAGAGATACTGCTCGGAACAACCAAGTTGGATCATTTGATATTAAATTGGGATTTAAGGGATGGCGAGGAATATGGGTGTCCTATGGAGAATGCAAACGTTACTCTCATAGCCTCGACTCCCCCGCTGCAATTTATAGAGTCGATTTTGTTTTGGGACATCATGACACAGTTCATATCGATATGCTTGAATTCGTGGGAGGAATGTCGATGCAGTCTCGCGATAAAATAGTTCCACCTTTCACAAGATTCGGCTCACGATACGACTCGAGCAACTTCTGGCAGCAAAGCTACCGTTGGAGTCAGCGAGCTCCGACTGCCCTTCCGGAAACGGTGGTTGCTTCAAAGTCCTTGAGTCTCACTCACACCGAAAGTCGCTTGAAAAACTGGTATTGCGATGAGAGGGAAACCACCTATGACTTCTCTGGAGAAGCCAAGAAGCGTTGGGATAAACTGGTGAGGAGCATTGACGCTGCATATCTGGAATACGATAGACTTTTATTTAGGACGCTAGACTCAGGGAAGAAAGTCATAGCCGGGCCTCCTTTGTTTTGTCGTGGTTGTGACAGGGGAACACGAGCGTATTCCAAGAAAGATCCAACAAGAAAGTTCAGCTTCGTCCAAATGCGTATCATTCTTCCTTTGGCGATAGAGTTTTATCTTAAATCCCGCGCCGAAGAAGTTTCCCGAACTGTGAAAGAAGAAACTCCTGAACTAAGTTCTACTAACAAAGTCGATGTGGACAGTGCCATTGAAAGGATTTGTGGAAAAGACGCAAACAGGCAGAAAGAGTTCCGCGATTACCTTGAAAGTTTGACGAAACCTTACACAAAGGACCAAATACGCAAAATATTGAatgacgaaaataaaaaacgccTTGAGAGAATAATCAAACTGCTTGACTACATTGAAGACCAAGGATGGGCTGATGGAAGTGCAATAGGCTCCCTGGATCATGAAATGAACCGTGGTGGTGCTGGGTACATGCACACTCTTTTCTTGCTGAAAGACACTTTGCACGGGGACGCTAAATACAGATCAAGACTTTTAAACCTAATAAACGCTGCCAAGTGGTTCAATGATTTTGGTGAAGTTTACCAATCGACGTTCGAGTTTAGCGGAACTACGGCTGACAGAATGATTACAATAATGTTGTTTCGGCTCATGATTGTGTTGATAATGCCTGCTAAGTCGGATatggaaataaaggaaaggcAGAGGGATATGGATGCTTTGAAAAGGTGGATGGATAACGCCCTGAGTATTAACAAAGCCTTCGGTGGAGTCATTAAACCTGATTATACTGGCTTTCATCACAAGACATTCTACGCATCTGCGTATGCCCCACACGCATATCATACAGCTGCGCAAGTACAATACCTCCTGGAAGGAACAGATTTTGCTCTGTCAGATGAGTCGAAACGAAATTTACTGGAAGCCCTTGAAACAATGAGGCTAGTAGCAGTTAAGTATTCAACACCAAACAGTGTCGGAGGACGCATTGTAGACTATTCTAAAAagattttggtaaaaattctCCCAGCATACGCTTACATCAGTGTTTCTCATCCATCTGGGCCACTGGCATCAACCCCAGCCAAAGAAGTCACAGTTCCTGCTGTTAGGAACGTTGGAATGTTTTTACGTTTGTACCAGCCCACCGACGAATctattaaaatgtatttggaAGATGGAACGGTTAGCAGGGGAAAATCATATATGAACAGCCTTGGATCACTGAAAATTATGTCGACCGTCTTTTCTAAAGGTACATCTCCTGAGCCCTCCCCTGAAGGTCACTGGTCCAAGAACTTTGCTGCTCTCTCAATTCATCGTCGTAAAGACTGGGCAGTGACGATAAAAGGCTTTAACCGGTTTGTCTGGGACTTTGAGGGATCtacaaagattaaaaaacctgaaaatgtTTATGGTACCTATCAGAGTCATGGTTCAATGTTGATAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCTCAAATTTGATGCAGATTGTTAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09093 all species →	Lyase_catalyt	Lyase, catalytic	Repeat	Interproscan
PF09092 all species →	Lyase_N	Lyase, N terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039174 all species →	Family	Chondroitin sulfate ABC lyase	Interproscan
IPR011013 all species →	Homologous_superfamily	Galactose mutarotase-like domain superfamily	Interproscan
IPR015177 all species →	Domain	Lyase, catalytic	Interproscan
IPR008929 all species →	Homologous_superfamily	Chondroitin AC/alginate lyase	Interproscan
IPR015176 all species →	Domain	Lyase, N-terminal	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR014718 all species →	Homologous_superfamily	Glycoside hydrolase-type carbohydrate-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37322 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006027 all species →	Biological Process	glycosaminoglycan catabolic process	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX44673.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.