Gene detail

Detailed information of RMX44690.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2968:132721...140165
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00012735

TTTCCCGCGCAAAGCACATGCCCGTTAGAAGCCTCGATCATCATGGCGGACAAACTCGAATCCTCCGAACTTAAATCTGAGGCCAAAGAAACGGCAAAGGATGAAAAGTCAAACAATGTGGAGGCCGAGGATTCGAAGCAAGTTTCAAAGAATGGTGAAGACGAAGACAACGAGGAGTCAAGCGAAGAAGAGGAGCATGCAGGACTCTATGACAAGCCAGTTGTTATTGAAGGGAAAAGAGCAAGGAAGTCAACAGACTTTCTGGTCAATCAAACCACACCAACTATAATCAAAGAGAGCAAGCCTCTTATCTTTGAGGGTAAGGGAGAATCCCTAGGATCTATTGAAAGAACAAACTATGAACTTGGAAGAAGTTCTGCAGGAGAGCTGAAGCCTCTTCACAAGCTTCTATATGGAAGAGAAGGAAGGGTAATGGAAGTTAAAAAGAATATTAGGAAGTTTAATGGATTTCCATTTGAAAAGGATTCTAAAGATTATGAAGCTAAAAAGCTTGGTGTAGAGAGATTTACAAATGATGGTCTAAAAAGgctttgtgaaatttttgacctggaaaagaagggaaaaaggAATGATCTTCTTGAAAAAGTCATGGATTTTCTTATGTCGCCAAAATCTTCAGGGAAAccTGCACCTCAGCCTAAAccaaaaaaggatgaaaagaaaaagagaaaaagaccaaaaaaggaGGGTAGctcaaagagtaaaaaagaGAAGTCAAAGAAGACATCAGAGATGGTAGAGAgtgaagatgatgaagaaaaagaggaagaggaagaagaggaggaggaggaggaacAGGAACAGGAGGAAGAAcctccaaagaagaaaaagaaagtcgAATCAACACCTAAAAAGACCGAATCTTCACctaaaaaagccaaagaaacGAAACCGaaagaaaagggaaaggagaaagaaaagaagaagagtaAAGACAAAGATAAAGACAAGGcaaagtcaaagaaaagtgtagaaaagacaaaaacatctAAAAAGAGAGACCCTGTTCCTGTGAAGATAACAGCTCTACAGAAAAGTCCCTCAAAGAAGAAGACACCTAAAAAAGAAAAACCAGTACCAGTAGATGACTCATCCTCTGATGAGGAACCGCtagcaaaaaaatcaaagaaacagCCTCCTACTGATAGTGAACTTGAAAAGATTGTTAAAGATCTTCTAGACGGTGCAGACCTTGAAATGGTCACAATGAAGAGTGTGTGTAAACAAGTGTATGATAAGTTTCCAGAGCATGACCTCACATCTAGGAAGGACTTTATCAAGGAAACAGTTAGAAAGGTCATATCATGAAATCAGCCAAATTTCCATGACAACATAAACAAGTACTAACCTTTTTAGCTTCTCACAAGTCTTATTCATGTACACTTTGTTTTTacacatcttttgttttgttaaaattttcattcctaACATAATACTTTGcagtaaaaagttttaagttttaaaaagttcttatGTCCTATCCTCTAAGATGCATAAGGgtattttacttaaatttttgaattgtttgcATGCAAACAGAGTTATCATAACTCaataggaagaaaaaaaccaatatgGTCGTGAGTCActtttaatcataaattaattaactaCACTTCATGTTTTGGAGAAAGATATAGAAATATTCTCTCTGATCTTGCGTCTACCATTGCTTTACATTATCAGTAAATTGTACATTTGTATCAGTATGATTCTGTTGGTAATGTAGTCTGATTATCGTGGTGAGAGAGGTCCTGAAAACAGGGGCAGGGGGGATTCTGGAATTTTTGAAGGGTGGGGAATCCAAACTttgattcagaaaacaaacacacaccAAAACATTCATAAGGAAGGAAACATCTTGAGACAGGCTAGTGTTGATGTCATATTGAGTAGTGACGTGTAGTCCTGTTGTTGCTATAATGTTTCTGTCAGGCAAGTACTGAAAAAACCCACAAGTCTGATGAGGGGAGGAGGGTGTTACCTTGACCCCTCTATTCttttctcccccccccccccccc

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08766 all species →	DEK_C	DEK C terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044198 all species →	Family	Protein DEK	Interproscan
IPR014876 all species →	Domain	DEK, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13468 all species →	DEK PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006325 all species →	Biological Process	chromatin organization	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan
GO:2000779 all species →	Biological Process	regulation of double-strand break repair	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17046	DEK; protein DEK	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.