Gene detail

Detailed information of RMX44770.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2964:100982...123204
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00009171

ATGTCTGTTGAAGTTACAAGTTCTTTAAACCAGGCCTCTGCTGTTGCAATGTCGCCAATCACAAACTACCCTCAGTCACCTGGTGGTGGAGGAACAGAGTCCTTTAGCTCTCGTTCTAAACGGGCAGCTTCTCCACAACGAGTCAGCAATGGATATGCCTCTCCCAAATCAAACTCAATCTTGTCACCAAGAAAGTCATCCAAGAGGTTCTTCCGAAGACCCACCCTTGATAAGAACCAGTCTTCTGACTGTTTAACACAAGGCAATGAAAAGAAAAAGCAATCAAATTCTCATCCGCGAGTTGAAATTATTTACAAAGATGCTTCATCAGAAAATGAATCTGATAAAGAGACAATGGTATCGTCTTTAAAGAAGGCATTTGAAGCAGATGGAACACCTTGTCTGAAAACACAATCTAGTAATTCTGAAGATGGATTACCGGCAGCTCTCTTAGAAGAATCTACCTCTCATTGTCTTGATGTGAATATGAATCGTATATCCACAGCCTCAGGATCTAGTCACACTGAAAGGGTTGTCCAGGAAATTGTTCTCACTGAGCAAGCTTATGTTTCACATTTACAAGAGATCATTGAGGGCTATATGAAGAAAATGAGAAATGAAAAATCTCCATTCTCAGAGCAAGATATCAAAGATTTATTTATGAACATTGAAGAAATATATGAATTTAACAAATCATTTCTAGATGAACTGGAAATCTGTGGAGATGATCCAGTGGAAGTAGCAAATCTATTTGTATCCAAGGAAAAAGGCTTTGTAACATATACAGAATACTGTACAAATTATCCAACTTCTATGGAAGTACTAACAAAGTCTACACAGAAAAAAGAGACTGCTGAATTTATAAAGAAAATTCAGGTTGAATTGGGCCATTCTCTTCCTCTTGGGTCATACTTGTTAAAACCTGTACAAAGAATTCTAAAATATCACCTTTTGCTGCAGGATATTCAAAAGCATTTTGACAAAGAAAATGATCCTGAAGGTTATGATGTAATATCTGAGGCCCTATCTGCCATGACTGGAGTAGCTCACCACATTAATGAAATGAAAAGACAACATGAAGTAGCAGTTCATGTGCAGGGTCCTGATCTTACCACTTATGGTAGTCTAGTTTTAGAGGACACCTTTCGAATGCATGGAACCAGAACAGATAGATATCTTTTTCTCTTCGAGCAAATCCTTCTCATCACAAAACGGAAAGAAAATGGCTACTCTTGTAAAGCTACACTTATGGCGAGGAACAAAGATCAGAAACGCCAGTGGATGTTAGAGTTGAAGAGACTGATCGTTGATAGTCTTTCTGCACAGGTTCCCACGAAGGCTAAAAATCTCATTCTCGGAAAGAAAAGTGTTGGAGAAACAAAAGAACTAGGTACTGAAGGGAAGAAAAGATCTTCATCCATGGACAACAAACTAAACAGAGGGACGCAACTTAAAGGGTCTTCTGGATTTACAGGAATGAAGCGGGAAAAAGTAAGCGTTAAATCAGATGACGAGAGCGAACCCAGATCTCCATCAGAAGCGTATTCTTCGGACGATGACAAGAAACGTCTCCGTTCGCATTCGTCCGTCAGTGACAAGGAAGAAAGCTTAGACGAATGTGAAGAACCAGTAGAGGAAAAGCGACAGGAGTCTGATCACAGGATTTCAACTCCAATAAATGAAAGTAGTGAGGATGAAGCAGAGGAAAAGTTCCCTAATAGCGAGGAAACTGTAGCACAGCCAAGAACATACTCAGTTAAAGACTCTCAAGGGGAAGTGTTGGGAACGGCAACTACTGAAGGAGTCGGCTTTGTATCTCAGATTAAGAACAATCAACAAAGTGAGGCAGAGGTTGCCAAAATATCGCGCGAAAGCGTTACCGCGTCAAGCGTCATAAGGCAACGCCCCAGTAGCTTCTCCAGCTCGGATTCTGTCAAAGAGTCACGCAAAAGAAAAAGTGTGACTAGAAATGGGTCCTTTAACAGTAACGCCTCCTGTGAAGTGGGTAGCTTTGCGCACCCGTCCTCTGATAGCCCAAGCCAAATAAGGCGGTCCTCAAACGGTGTCCGACTATTGGAAGCTCGGCGAAGCCTTGAAAAATCTTCGTCTGCTTTAGACTTACGTGACGTAGACGAAGACTCGGCGTCAGTGTTTAGCCATGGCGACATAGAGAATTTCAGGGAGTATTCAGCAATACAGACTACTGTGAGAAAAGTAAGCCGAGCGTTCAGTGGCTCTTCTCCACCTGACAAAACCTCTCCAAGCGAGAACCAGATGCGTACCGCGCAGACACACTACATCGTGGAATCTCGCAATACCCCGGATAAAGACTCTTCTCTCTCGAGCTCAGACTCCACACAGCAAAACTTGGAAGAGCTACTTGCTTCCATCGACCGCGACTTGGATGAGACACGTCGCACAATTTCTTGCGCGCAACTGTTAGAATCTGCTCTTCTTATTAAGAATGACGGCAGATTAGAGACTACGTTCACGAACAGTCTTACGCGTAAAAGGCGTCCTCGGATTATCGACTTTACAACTGAAAAGATTGAGTCCCAGGTAGATGAATCTAGGAGTTCTTTTTCTGACGAGCGAAATGGAAGGAGTGAACAATCCGAACACGAAAACCGTCTGCGTGGTGATGCATACAAGAACACTTCAGTTTATTCCGAACATGAAAGAGAATTTAACTCTTCAGAAGGAAAAAATGGTAAAGAAAAGCAAGAGTTGTCAGTTTCTAACGAGATTGAACAATCACAGGCTTCTGCTCTTTCTACTGATTTAGAACCACAGGGAGTCCAAGTAGACCAACCTTCTCGAGCAGAGGATCAAAACCAACCGCAAAAACGCGTTCTTGAACCATACGCTGATAGTAACAGCGAAAAGAGCAAGCCGTCAACAACAAACGAAGAGGACGTTTACGGGGAAACAGCCCCACGTGTCATTACGCCCATTAAATCTAGCTTGCCGAGTGTTCATAAGATGGCGAGACAGTATTCTCGAAAAGTCGCCGAGGAACAGACAGTGGAGAATATACGCATGCGTGCGCGAAATAAAGTGCGCGACAAGATAGAGTCGGACACAGCGGTCAGTAATAAGCAAGACAATACAGACCATACTCCTAAGATAAAAATTGAAAAAGTCACTAAGGTTTCATTCACTAGTACTCCGATCGAAAGTTACAAGCTCGTAAGGCGTCGACGAAGGCGTTCGGGATCTTCTCGACATCGCTCGGACGATTTGCGGCGCCTGAGTTGGTCGGTTGAGAAAGTAAAACCAGAATCGGAGGAACCACGCAAGACGAGACCCAAGAGTGTGTTCGATATGGAGGCCTTGGAGGCTACACTGACAGAAAATATGGAACAGATCGAGGAGGGTCTGGAACCAATGTTAATCGAGGGATTGGAAAAGGATGATGTGGTTGTTAGAGGACTGGTGCAGCACTTGGTTAATAAGTTTAACTCTCACAAATAG

Transcript

rna-pdam_00009171

GATCATGGCTGCAATGAAAACTATTTAAGCAGCAGTGAAAATGAAGCTTgcaaaaaattcaggcttgaACGtaatttgaacccatgacctctgcgataccgcTGCAATGCTCTATAACTAAGCTAACTGAGAGCTggtcatttcctctattcgTAAAAAAACCCGTCTTGCGATGAATGGGCGATAGACAACATATGAATATCGTACATTTGAACCTGCGGAGTAATAACTGATGATGAGAGCGATCTACGCGGTGATGTGTAAGATCAAGTGCGGCCGAAACCGCTACCCATTCCGTCAAACAATTCACGACGTTAACGGGCATCAATGGctagaatattttaattaacttgCCGTCAGTCTCCTCCCTTAACCCTATAGCTACGTCAGTTACTTTTTTATGTATTTCCATATATGATAAATAACAAACAGGGCAAAGTAAAACTGGGAGTATTAGTCTGGGCGGATATAGAGGCTGCCGAGGGGACAGTCACATCCCGTACGGAAGTCGTCTGATGACTGATATATAGTGAGGCTAACCACAAGTTCtaggtttttctcttttacgTCTTTTCATGTCTTTAGATCCGCTCcagataaatgttttgaaaactttttatcacTGCCATATTAGCTCCATGCCTTAACGTGAAGTTCGTTATAGGTAACGCCTTGCTTGATCCAATACCTAATAGGTCAGGCTTTACTTTCCTCAAGATCGTGCAGATCGCCCCAAAGTATGCATAGGTGATCGGGCCGACGACTGTATGGAAACCAAGCGAAACGACTCCTTAAGACCAGAATAATCGTGGCGATCTCGATCGTCGTGCCCTTACGCCTGGCCCATTTTAGCTCATAAAACGAAGATAGCGGCAGTCGgaacaattaaaattcagGAAATTGTTCCGTACCTTGAATTGCAAATGGTAGGAAAACCAATTGACTGCAGGGTCTGGGTGATCAAATGAAACTGGCCTTAATCTTCAGTTCAAACCGTGCTCCTCTGAAAATGTCTAGCACTTCACATTTTGTTTAGCAGTTCAATGCATTCAATGCatatttgattgattgattagtTTGCGTAAAATGTCATTAATCAAGAAAAGAGTCGGTGGGGTGACTGAATAGTAGTGGTACGTGGTGTGGCAGGTGTAATTATAATCAAAAGTCAAATTGACGATTACAATTgacaataaaatacaattatgATTGTCGATAGAATACAGCTTGTGATGACGACATCACGTGTTATCTGCAAACGTTGAAGAGCCTTTTAACCACATGTCAGTATTTTTGCCTTGTTTCATTCAGTTGCTTTGTTTAGGTCACGACTCAGTAATTTTTCCAATCGAACATGCGAGATGATTACGTACTTCAATTTTGAGTGACGCTTCGCGAAATTCTTGTCAAGTTTGTCTCTGCTGATTGTCTATTCCGATATCAAGCGAAATATTGTGGAAAATATCGCCAAGGTGTGATAACATTGACAACTGACAAACTTGACGACTCAGTTACAGGGCTGATATAAAGTTAGCCAAACGCACGAGGGATCGCCGAGGTTCTTTGTAAAGGGTTTGGTCACGCCGCCCGGAATTCTGCATCAGCGAAAAAGTGGAATCAACTCAATATCTGGTCTTCATCTAAGTAGGAAATGGCTAACATTACACGTcatttccaaaggaaaaattctcttGGTACTTCCGCCGATTCTACCTGAGACATTTACCAGTTGTCTTACTCCGATGAAGCGAGGAAGTCACAAAGTTCTGTTACTCAGTGTTTGTCAGTCAGTTCAAAGACTCGATTAATCCTTCCCAGAATACTATTCGGTAGCACTCGGAAATTTATTCACATTTTGGACAAGAGCACACACTCTATTTCCTTTGGACGTGACCGGTTTAATGCTCTGCAGATTTTCTACATGAACTGTGACAGTTTCTCTCCTTTAGTTCAAAATGGTTTGACCTAACTGTGTAAATTCATTGAGAGTAGGGCCCTGTATGTTGCTGTATACCGCTTACTGGTTTGGCAAACCCCGGACCGTTCGCTTTGGGGCTTCTGTCTGTTGAAGGaatttgatgaagaaaaactgTTGGTATTTGCATATTTCTGTCGAGCTTCGAACGATCACAAGCAATGGTTGACTCACAATGTCTGTTGAAGTTACAAGTTCTTTAAACCAGGCCTCTGCTGTTGCAATGTCGCCAATCACAAACTACCCTCAGTCACCTGGTGGTGGAGGAACAGAGTCCTTTAGCTCTCGTTCTAAACGGGCAGCTTCTCCACAACGAGTCAGCAATGGATATGCCTCTCCCAAATCAAACTCAATCTTGTCACCAAGAAAGTCATCCAAGAGGTTCTTCCGAAGACCCACCCTTGATAAGAACCAGTCTTCTGACTGTTTAACACAAggcaatgaaaagaaaaagcaatcaaattCTCATCCGCGagttgaaattatttacaaagatGCTTCATCAGAAAATGAATCTGATAAAGAGACAATGGTATCGTCTTTAAAGAAGGCATTTGAAGCAGATGGAACACCTTGTCTGAAAACACAATCTAGTAATTCTGAAGATGGATTACCGGCAGCTCTCTTAGAAGAATCTACCTCTCATTGTCTTGATGTGAATATGAATCGTATATCCACAGCCTCAGGATCTAGTCACACTGAAAGGGTTGTCCAGGAAATTGTTCTCACTGAGCAAGCTTATGTTTCACATTTACAAGAGATCATTGAGGGCTatatgaagaaaatgagaaatgaaaaatctccATTCTCAGAGCAAGATATCAAAGATTTATTTATGAACATTGAAGAAATATATGAATTTAACAAatcATTTCTAGATGAACTGGAAATCTGTGGAGATGATCCAGTGGAAGTAGCAAATCTATTTGTATCCAAGGAAAAAGGCTTTGTAACATATACAGAATACTGTACAAATTATCCAACTTCTATGGAAGTACTAACAAAGTCTACACAGAAAAAAGAGACTGCTGAATTTATAAAGAAAATTCAGGTTGAATTGGGCCATTCTCTTCCTCTTGGGTCATACTTGTTAAAACCTGTACAAAGAATTCTAAAATATCACCTTTTGCTGCAGGATATTCAAAAGcattttgacaaagaaaatgatcctGAAGGTTATGATGTAATATCTGAGGCCCTATCTGCCATGACTGGAGTAGCTCACCAcattaatgaaatgaaaagacaaCATGAAGTAGCAGTTCATGTGCAGGGTCCTGATCTTACCACTTATGGTAGTCTAGTTTTAGAGGACACCTTTCGAATGCATGGAACCAGAACAGATAgatatctttttctcttcGAGCAAATCCTTCTCATCACAAAACGGAAAGAAAATGGCTACTCTTGTAAAGCTACACTTATGGCGAGGAACAAAGATCAGAAACGCCAGTGGATGTTAGAGTTGAAGAGACTGATCGTTGATAGTCTTTCTGCACAGGTTCCCACGAAGGCTAAAAATCTCATTCTCGGAAAGAAAAGTGTtggagaaacaaaagaactagGTACTGAAGGGAAGAAAAGATCTTCATCCATGGACAACAAACTAAACAGAGGGACGCAACTTAAAGGGTCTTCTGGATTTACAGGAATGAAGCGGGAAAAAGTAAGCGTTAAATCAGATGACGAGAGCGAACCCAGATCTCCATCAGAAGCGTATTCTTCGGACGATGACAAGaaacgtCTCCGTTCGCATTCGTCCGTCAGTGACAAGGAAGAAAGCTTAGACGAATGTGAAGAACCAGTAGAGGAAAAGCGACAGGAGTCTGATCACAGGATTTCAACTCCAATAAATGAAAGTAGTGAGGATGAAGCAGAGGAAAAGTTCCCTAATAGCGAGGAAACTGTAGCACAGCCAAGAACATACTCAGTTAAAGACTCTCAAGGGGAAGTGTTGGGAACGGCAACTACTGAAGGAGTCGGCTTTGTATCTCAGATTAAGAACAATCAACAAAGTGAGGCAGAGGTTGCCAAAATATCGCGCGAAAGCGTTACCGCGTCAAGCGTCATAAGGCAACGCCCCAGTAGCTTCTCCAGCTCGGATTCTGTCAAAGAGTCacgcaaaagaaaaagtgtgACTAGAAATGGGTCCTTTAACAGTAACGCCTCCTGTGAAGTGGGTAGCTTTGCGCACCCGTCCTCTGATAGCCCAAGCCAAATAAGGCGGTCCTCAAACGGTGTCCGACTATTGGAAGCTCGGCGAAGCCTTGAAAAATCTTCGTCTGCTTTAGACTTACGTGACGTAGACGAAGACTCGGCGTCAGTGTTTAGCCATGGCGACATAGAGAATTTCAGGGAGTATTCAGCAATACAGACTACTGTGAGAAAAGTAAGCCGAGCGTTCAGTGGCTCTTCTCCACCTGACAAAACCTCTCCAAGCGAGAACCAGATGCGTACCGCGCAGACACACTACATCGTGGAATCTCGCAATACCCCGGATAAAGACTCTTCTCTCTCGAGCTCAGACTCCACACAGCAAAACTTGGAAGAGCTACTTGCTTCCATCGACCGCGACTTGGATGAGACACGTCGCACAATTTCTTGCGCGCAACTGTTAGAATCTGCTCTTCTTATTAAGAATGACGGCAGATTAGAGACTACGTTCACGAACAGTCTTACGCGTAAAAGGCGTCCTCGGATTATCGACTTTACAACTGAAAAGATTGAGTCCCAGGTAGATGAATCTAGGAGTTCTTTTTCTGACGAGCGAAATGGAAGGAGTGAACAATCCGAACACGAAAACCGTCTGCGTGGTGATGCATACAAGAACACTTCAGTTTATTCCGAACATGAAAGAGAATTTAACtcttcagaaggaaaaaatggtaaagaaaagcaagagTTGTCAGTTTCTAACGAGATTGAACAATCACAGGCTTCTGCTCTTTCTACTGATTTAGAACCACAGGGAGTCCAAGTAGACCAACCTTCTCGAGCAGAGGATCAAAACCAACCGCAAAAACGCGTTCTTGAACCATACGCTGATAGTAACAGCGAAAAGAGCAAGCCGTCAACAACAAACGAAGAGGACGTTTACGGGGAAACAGCCCCACGTGTCATTACGCCCATTAAATCTAGCTTGCCGAGTGTTCATAAGATGGCGAGACAGTATTCTCGAAAAGTCGCCGAGGAACAGACAGTGGAGAATATACGCATGCGTGCGCGAAATAAAGTGCGCGACAAGATAGAGTCGGACACAGCGGTCAGTAATAAGCAAGACAATACAGACCATACTCctaagataaaaattgaaaaagtcaCTAAGGTTTCATTCACTAGTACTCCGATCGAAAGTTACAAGCTCGTAAGGCGTCGACGAAGGCGTTCGGGATCTTCTCGACATCGCTCGGACGATTTGCGGCGCCTGAGTTGGTCGGTTGAGAAAGTAAAACCAGAATCGGAGGAACCACGCAAGACGAGACCCAAGAGTGTGTTCGATATGGAGGCCTTGGAGGCTACACTGACAGAAAATATGGAACAGATCGAGGAGGGTCTGGAACCAATGTTAATCGAGGGATTGGAAAAGGATGATGTGGTTGTTAGAGGACTGGTGCAGCACTTGGTTAATAAGTTTAACTCTCACAAATAGAAACGTTCTGGTCAAAGAACCCCTTTGAGGTTGTTCGGTCCACGATTAAGTCTTTTGGTGTAAACTTTATTCGGTGATTTTGAGTCCATCTCCCAAATCATGGCCACGAACAAGAAGTTATTTTCTACGAAAATGCTCGAATGCTCTTGTTTTGTCAGTTccattgttatttgttttcttgctaATTTTGACGACAAGAGCGTGTGGGATTTGAGGAACACACTCAAGCAACAACAGTTAACATAACAACACGTTTGCGAAGAAGGAAGTTTATCAGGTTTAATGTTATGAGTGGGATacatgtttattgtttttgctaattttgacattttccgaGAAAGTAATGACCTCTATTTGTCTCGTTAGTTAACTCTTTTTGTCATAAAGTAGGTTGTGTGCTCTGTCACGTTGTGAATATAATGTGCAACGCTGGCGTTGCAAAGACTGTATCGATAGCTTTAAAGTATCGTcatgtttatatttaatttcGCTGCGCCAACCTAGTGCCCAGGTTCGACTCTCTCAGAAAGAAACACGCATTAGGATGAGGGCTCAGGAACAAGGCTGGATTGAAAGTATAGTGCAGAAGTTTTTACCAGTGTGATCAGCGGATGTATATGTTATTGGAAGTTTACCTCACA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45924 all species →	FI17866P1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23859	PLEKHG1_2_3; pleckstrin homology domain-containing family G member 1/2/3	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.