Gene detail

Detailed information of RMX44890.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2939:205472...230688
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00012561

ATGTTGATCAACAGTAAATTGTCCTGGAGACCACATGCTGAGCTGCTTTCTGAAGATGACAAAACATTTCCACAACTCACCAGAATTCATGTGGCCTCTTCTGAAATGACAGTAAATGATGGTGGATTTCTCAATGCCGTCAGGGATGGAAGCTGTACTCATGTGCTGAATCTGTTGCATGGAGGAGGGGTGGATTTGGAGCAGAGAGATGAGAATGGCCAAACTGCGTTGATTATTGCTGCTGAAAAAGGGAATGTTGAAATTGTCCATGAATTGTTAAAGAGGAATGTTCAAGTCAATATACAAGATGAGGATGGCTGGACAGCCCTTATTGCAGCTTGCAAAGAGGGGCATTACGAGGTTGTTAAAGAGCTCATGGAGAATGGAGCAAAAGTTCAGTTACCAGATTTAGGAGGTTGGTCTCCTTTGGTATGGGCTTCATACAAGGGACATGCAGACATTGTAAGGGAGCTGTTGGACTATGGTGCAGATCCTAACGAAAGAGGACAACATGGTATGACAGCCCTTATATGGGCATCAGGACGGGGACACACTGAGGTTGTTGATCATTTACTGGAAGCTGGAGCCAATCCCGACGCTGCTGACAAGTATGGGACCACCGCTCTTGTATGGAGCTGCAGAAAAGGACACTTAGGAACTTGTCGAAGTCTTGTAGCAAAAAACGCTAACGTCGATACCGCCAGTAGTAGAGGTTGGACCCCGTTAATAATGGCAGCAAAAGGTGGTTACACAGAGGTAGTGGATTGTCTCCTGGAAAAGGAACCACACATAAACGATACGGATCAGGAAGGAAATTCCGCGTTGAGTTGGTCAGCCAAGCATGGGCATGAAGAGATCGTCCAACGACTTTTGGCAAGAGGGGCGTACTTTAATTTACCAGATAAAGAAGGCGAAACTGTTTTAATCTCTGCTGCAAGAGACGGCCATTTAGAGGTTGTGCGGACATTGTTAAGCAAATATGCAGATGTGGAGGCTGCAGACACCGAGAGCAAGACAGCTTTGTTTCATGCAGTTGAGAAAGGCCACGTCTTAATTGTGAAGGAGCTTCTAGATGCAGGAGCGAACACAGAAACTCAGAACAAGGACGGTGAAACGCCACTAATCAGAGCCACACAAAAGAAGCACACTGCAATCGTATCTCTTTTGCTTGAAAAAGGAGCCAGCGTCTCCGTAGCAGATAAGCGAGGAGATACCCCAGTTCATATTGCCGTCAGAGGAAGATACCGACGCATTTGCGAACTCCTGTTAAGGAACCCAAAGGACGCTCGGCTTTTATATCGTCCCAATAAATCCGGAGAAACACCGTATAATATCGACAGACAGCACAAACATAGTCTGCTGACGCAAATCTTTGGCACTGGTCTTTTTACTCCGGGTAAGAAATACAGTGAGGAAGTGATGGGTTATGAGGTCTACACCAGTGCTTTAGCGGACGTGTTGTGCGAGCCTTCGCTCACCATGCCGCTGACTGTTGGAATGTATGCGCGGTGGGGGAGCGGCAAATCTTTTGTTTTACGGAGGTTGCAAGATGAGATGCGTGAGTTTGCTCATCAAGATCTTCGTCCAATGTTTCACTTTTCTCGCTTCATATTTGTAATTCTTCTGGTGTTCTGCGTAGTGATTGGTGTTCTACTCGCGGCAACTACGAGTCTTGCCGCTGGCGTCGCCGTAGGAGTCGGTATTTTCGTGACATGTTATCTTCTGTTTTTGTGCGCGTATGTGGCAGATAGACGCTACAACCGCGGAGAACCGTCTTGCGGCATAGGCGGTTACGTAACCAAGGCGGTGGGTACCGTAAAATTGTTGAGCCAACTGGTATTTTGTATTCCTCCGTGTCCGAGTGCCACGAAACCGAACATGCCAGTTCGCTTCCTCTTCACAGACTTTAGTAAATTGACTTGCAGTGGAAGCGAAGCGGCTTCATTGGTCGGAATGATTGAAACGTTATGTGACGTTGTCGAGAAAGAGTTCGGATTTTTCGTGACGAGGTTATATAGAGTGTTTCGGTCCCAACCTTCCGATTATGATGAATCGACATTGACAGAGGCGCGCTGGAAACGCTGCTGTTGTTGTATACCAACGTTCACGATATTTCTTGCGATTCTAGCGCTTGGTATGATCGGCCTTGTGTTTTTCAGAGTGTACGGGACGAAGGGCAGTTCTGTTATAACAGGCATAGAAATCGCATCTGCTTCGATTGTGGGCGTGGCGGTTTTGATTCACCTGCCCACCCTGTGCTCAATCTTATACTCCTTGGTTTTCTCGCAGAAGAAGCGAATTTCTGTGGTAGCCACACAGCTGGGCTTGAAAGAGGAGGGATTCATCCACGCGCTGAAACAAGAGGTAGAGCTCTTAACAGATTTGGTAAATTGCGTAGATGGATTCACCAGGCATCAGACAAGAGTTGTGATAGTAATTGACGGACTTGACAACTCGGAGCAGTCGAAAGTGTTACAACTTCTGGACTCTGTAAACCTGCTTTTCACTGATCCTGAAGCGCCTTTCATTATATTAATGGCTTTGGATCCTCGAGTCATCATCCGGGCAATCGATCAAAGCTTTAGCAGTATTCTGCGCGAGTCTCATATCAGCGCGTCTGATTATTTAAAAAGCATAGTACAGCTTCCATTTTACCTTCCTGAACCCAAGTCTAATTACACCGGAGTGTTGTCGACAGGGGTTGTCACCCTACTAGATGAATTGAGAGGTGAGCTTCAGACTGATAATCCAGGTGCAGCGGAGCGCTCCAGCATGGCACGTTCCAGTGTGGCCGTGGACGATCTAGAGTGGGACGGAGAGATGTTGGAATTCAACGAGGGTGACAACTGTCTCCCTCAGGGGCATAGAGTATCACGGGATTTGCATAACTGTAACGGAGGGGTGCCGAGTCGGATCCATCCCGAACTAGAGCTGCATCACTCCATGCTCTATGAGCCAGAGTCTCATGAGGAAGAGCGCTGTTTGGATCATCAGAAGCTTTTGGACCACGAGTTGGAGCTCGAGGAGCGTCGCCGTATCTCAACTGACCTTGCGCAAGTGCTTGCTGACAACGAGACTGTAAATCCTCTCGGCGTGAAACGCCTCATGAATATCGTCTCTTTAACGTGTCGTCTGCTTCGTGCGCGCGGTATTGATTACTCATGGAAGCGTCTTGCAGCCTGGGTCAGTGTAGTTGATGGATGGCCGTATCGGACATCCTGGCTTGTTCTTCTAATCGAGGACAGCAACACCCGTTTGCAGGATAATGTACCGTTGAAGGATCTTTACGAGGCGACATTGTCCGCCATGCCAGTAATCAATGAAGTGGATTGCGCAGTGGACGGAGACCCTGTGTATTTTGAAACTTTCCTCGCCAGTCATCATCCGCTTCTGAGCACGTCTGATGTGAGGCGTTTCCTGCCGTGCACTGTGCATTTGGATCCGTCGTTACGTAGGCAGATGGTAGAGTGTTTGCATTCAGGAACCAGCGTAGCGGGCAACAAATCTGATACTGGTAGCGTTGGCAAGGGAAATCCACATTTGCAGGTCGGCTCCATAGGAAGATCTGACAAGCAGACAAGCTTAGCTACTTTAACTATCGAAGATGTTTGCAAACAGCTCGCTGAAATGGAGGGTTTGGATCAAAAGCAGATATCAACTTATCAGACCGTCGTAACAAAAAATAACATCAACGGTAAAGTTCTGGCGTCGTGCGACTTATCTGAACTTAGCCACATCATGGCGATGACGTTCGGTGATTGGCAGCTGTTCCGCGCATGGATTCTAACAGCTAGAAATCCAAATCAAGAATGTACAACGTGTCACTTGAGTAACAAATGCGTAAGTCCAGGAGAGATGAATTGCCAGCTGCTCAAGACATCCTCCTCAGGGGCATGGGATCACGCCAATCCGCTGACTGCCCCTGGGAGGAGCAGCGCAGATTCAACGGAACAAGCTTCACTAGAGTTTCATTCATCGAAAGCCCCGGACATAGTACTACAGCCTCCGTCGGCGCCGGACAGCGAGGAGGAAGACAATAACGGGGAAACGGTTAACACGGCCGAAACAGAACTTGAAAAAGATGAAAACGTAACGAGAATAAATGAGTTATCCGATGGCGAGGAAGATGAAGGAGCAGGAAGCTCCAGTGCTGGCTTGAATCAGGTCAAAATTAAGGAAGACAGTGTTCTTATTTCGCTAGAGGACGATATTAACCTCCCACCCCAGCCTCATCTTCAAGCAGCGTTTAAGAACGATGATGATAATGACGACGAGCTCCCTGCTCCTCCCCTTAGCGGTACTGATTTGATTACGTTTAGTGAATCTGAAGACCAACGCGAACGTTCAGACGTTGAGAACGATATTTTTCTAGTTCAGCCGGGTGCTTCGAATGCACAAGGAAAAGCAATTAATACCCCACCAGTCATGGAATGCACGTGTGAGAATCTAAAGCTCATGGAGCCTGTCCAGGAGCGCAAATTGTCCAAGAATTCTCTGTTCTTTGACACGGAAGATAGCGTAGAGGTTGGTCGTCCTGCACCCGTTGTTATTACACTGAACAGAAACGGACCGGTTAAGGCTGCTGTGGCCGTCAAACGAAGCAATAGCTCATCAGGGAGTAGCACAGGTAGTTCCAGTTCAGGTCGATTACCAATTTCACAATCAGTTTCTACTGATGTCCACCACGAGAAATCTGCCCCCAGTTTTTCTCCCTCAATACGACAAAATTCTCTCCCGGAGCCTAGTCACGTAATACGACCCCACTCTGCCTCGGATGTTGTCACTATCGAACATCGGCCCAAATTTTTAAGAAAGAGCCCGCCGGTTGATTCGGACAGCGAACCTGAGTCGTTCGCGCAGGCGTCGGATCCGTTGATTCCCGAACCAACGAAAGAAGATAAAGACTTACAGCGCTGTAGTCGTGATTCAAACGACTTTCCACCACCTCCACCGTCCATCGAAGACAGCTCAAATTTCGACCAAGGGGACTGCCCTTGGGTGCCACTTATGAATCGATTTCAGGTCGAGGCTGGTGGTTCGTCTGTGTCAGAAAGCGAGCAACCGCTGTTACCGGATCGTCGTCCCAGGCCTAAATCGTCAACGGGTGTGATTGAAAATAAAGCGCCCAAATTTCGCACGTATACTCCGAAACCAAAACCAACTTACGTGGAGACGAAAAGTAACCAACATCAAAACCTGAAAAGCGAGACTTGTGTGTGA

Transcript

rna-pdam_00012561

ATGTTGATCAACAGTAAATTGTCCTGGAGACCACATGCTGAGCTGCTTTCTGAAGATGACAAAACATTTCCACAACTCACCAGAATTCATGTGGCCTCTTCTGAAATGACAGTAAATGATGGTGGATTTCTCAATGCCGTCAGGGATGGAAGCTGTACTCATGTGCTGAATCTGTTGCATGGAGGAGGGGTGGATTTGGAGCAGAGAGATGAGaatGGCCAAACTGCGTTGATTATTGCTGCTGAAAAAGGGAATGTTGAAATTGTCCATGAATTGTTAAAGAGGAATGTTCAAGTCAATATACAAGATGAGGATGGCTGGACAGCCCTTATTGCAGCTTGCAAAGAGGGGCATTACGAGGTTGTTAAAGAGCTCATGGAGAATGGAGCAAAAGTTCAGTTACCAGATTTAGGAGGTTGGTCTCCTTTGGTATGGGCTTCATACAAGGGACATGCAGACATTGTAAGGGAGCTGTTGGACTATGGTGCAGATCCTAACGAAAGAGGACAAcATGGTATGACAGCCCTTATATGGGCATCAGGACGGGGACACACTGAGGTTGTTGATCATTTACTGGAAGCTGGAGCCAATCCCGACGCTGCTGACAAGtaTGGGACCACCGCTCTTGTATGGAGCTGCAGAAAAGGACACTTAGGAACTTGTCGAAGTCTTGTAGCAAAAAACGCTAACGTCGATACCGCCAGTAGTAGAGGTTGGACCCCGTTAATAATGGCAGCAAAAGGTGGTTACACAGAGGTAGTGGATTGTCTCCTGGAAAAGGAACCACACATAAACGATACGGATCAGGAAGGAAATTCCGCGTTGAGTTGGTCAGCCAAGCATGGGCATGAAGAGATCGTCCAACGACTTTTGGCAAGAGGGGCGTACTTTAATTTACCAGATAAAgAAGGCGAAACTGTTTTAATCTCTGCTGCAAGAGACGGCCATTTAGAGGTTGTGCGGACATTGTTAAGCAAATATGCAGATGTGGAGGCTGCAGACACcGAGAGCAAGACAGCTTTGTTTCATGCAGTTGAGAAAGGCCACGTCTTAATTGTGAAGGAGCTTCTAGATGCAGGAGCGAACACAGAAACTCAGAACAAGGACGGTGAAACGCCACTAATCAGAGCCACACAAAAGAAGCACACTGCAATCGTATCTCTTTTGCTTGAAAAAGGAGCCAGCGTCTCCGTAGCAGATAAGCGAGGAGATACCCCAGTTCATATTGCCGTCAGAGGAAGATACCGACGCATTTGCGAACTCCTGTTAAGGAACCCAAAGGACGCTCGGCTTTTATATCGTCCCAATAAATCCGGAGAAACACCGTATAATATCGACAGACAGCACAAACATAGTCTGCTGACGCAAATCTTTGGCACTGGTCTTTTTACTCCGGGTAAGAAATACAGTGAGGAAGTGATGGGTTATGAGGTCTACACCAGTGCTTTAGCGGACGTGTTGTGCGAGCCTTCGCTCACCATGCCGCTGACTGTTGGAATGTATGCGCGGTGGGGGAGCGgcaaatcttttgttttacggAGGTTGCaagATGAGATGCGTGAGTTTGCTCATCAAGATCTTCGTCCAATGTTTCACTTTTCTCGCTTCatatttgtaattcttctGGTGTTCTGCGTAGTGATTGGTGTTCTACTCGCGGCAACTACGAGTCTTGCCGCTGGCGTCGCCGTAGGAGTCGGTATTTTCGTGACATGTTATCTTCTGTTTTTGTGCGCGTATGTGGCAGATAGACGCTACAACCGCGGAGAACCGTCTTGCGGCATAGGCGGTTACGTAACCAAGGCGGTGGGTACCGTAAAATTGTTGAGCCAACTGGTATTTTGTATTCCTCCGTGTCCGAGTGCCACGAAACCGAACATGCCAGTTCGCTTCCTCTTCACAGACTTTAGTAAATTGACTTGCAGTGGAAGCGAAGCGGCTTCATTGGTCGGAATGATTGAAACGTTATGTGACGTTGTCGAGAAAGAGTTCGGATTTTTCGTGACGAGGTTATATAGAGTGTTTCGGTCCCAACCTTCCGATTATGATGAATCGACATTGACAGAGGCGCGCTGGAAACGCTGCTGTTGTTGTATACCAACGTTCACGATATTTCTTGCGATTCTAGCGCTTGGTATGATCGGCCTTGTGTTTTTCAGAGTGTACGGGACGAAGGGCAGTTCTGTTATAACAGGCATAGAAATCGCATCTGCTTCGATTGTGGGCGTGGCGGTTTTGATTCACCTGCCCACCCTGTGCTCAATCTTATACTCCTTGGTTTTCTCGCAGAAGAAGCGAATTTCTGTGGTAGCCACACAGCTGGGCTTGAAAGAGGAGGGATTCATCCACGCGCTGAAACAAGAGGTAGAGCTCTTAACAGATTTGGTAAATTGCGTAGATGGATTCACCAGGCATCAGACAAGAGTTGTGATAGTAATTGACGGACTTGACAACTCGGAGCAGTCGAAAGTGTTACAACTTCTGGACTCTGTAAACCTGCTTTTCACTGATCCTGAAGCGCCTTTCATTATATTAATGGCTTTGGATCCTCGAGTCATCATCCGGGCAATCGATCAAAGCTTTAGCAGTATTCTGCGCGAGTCTCATATCAGCGCGtctgattatttaaaaagcaTAGTACAGCTTCCATTTTACCTTCCTGAACCCAAGTCTAATTACACCGGAGTGTTGTCGACAGGGGTTGTCACCCTACTAGATGAATTGAGAGGTGAGCTTCAGACTGATAATCCAGGTGCAGCGGAGCGCTCCAGCATGGCACGTTCCAGTGTGGCCGTGGACGATCTAGAGTGGGACGGAGAGATGTTGGAATTCAACGAGGGTGACAACTGTCTCCCTCAGGGGCATAGAGTATCACGGGATTTGCATAACTGTAACGGAGGGGTGCCGAGTCGGATCCATCCCGAACTAGAGCTGCATCACTCCATGCTCTATGAGCCAGAGTCTCATGAGGAAGAGCGCTGTTTGGATCATCAGAAGCTTTTGGACCACGAGTTGGAGCTCGAGGAGCGTCGCCGTATCTCAACTGACCTTGCGCAAGTGCTTGCTGACAACGAGACTGTAAATCCTCTCGGCGTGAAACGCCTCATGAATATCGTCTCTTTAACGTGTCGTCTGCTTCGTGCGCGCGGTATTGATTACTCATGGAAGCGTCTTGCAGCCTGGGTCAGTGTAGTTGATGGATGGCCGTATCGGACATCCTGGCTTGTTCTTCTAATCGAGGACAGCAACACCCgtttgcaggataatgtaCCGTTGAAGGATCTTTACGAGGCGACATTGTCCGCCATGCCAGTAATCAATGAAGTGGATTGCGCAGTGGACGGAGACCCTGtgtattttgaaactttcctcGCCAGTCATCATCCGCTTCTGAGCACGTCTGATGTGAGGCGTTTCCTGCCGTGCACTGTGCATTTGGATCCGTCGTTACGTAGGCAGATGGTAGAGTGTTTGCATTCAGGAACCAGCGTAGCGGGCAACAAATCTGATACTGGTAGCGTTGGCAAGGGAAATCCACATTTGCAGGTCGGCTCCATAGGAAGATCTGACAAGCAGACAAGCTTAGCTACTTTAACTATCGAAGATGTTTGCAAACAGCTCGCTGAAATGGAGGGTTTGGATCAAAAGCAGATATCAACTTATCAGACCGtcgtaacaaaaaataacatcaacgGTAAAGTTCTGGCGTCGTGCGACTTATCTGAACTTAGCCACATCATGGCGATGACGTTCGGTGATTGGCAGCTGTTCCGCGCATGGATTCTAACAGCTAGAAATCCAAATCAAGAATGTACAACGTGTCACTTGAGTAACAAATGCGTAAGTCCAGGAGAGATGAATTGCCAGCTGCTCAAGACATCCTCCTCAGGGGCATGGGATCACGCCAATCCGCTGACTGCCCCTGGGAGGAGCAGCGCAGATTCAACGGAACAAGCTTCACTAGAGTTTCATTCATCGAAAGCCCCGGACATAGTACTACAGCCTCCGTCGGCGCCGGACAGCGAGGAGGAAGACAATAACGGGGAAACGGTTAACACGGCCGAAACAGAActtgaaaaagatgaaaacgtAACGAGAATAAATGAGTTATCCGATGGCGAGGAAGATGAAGGAGCAGGAAGCTCCAGTGCTGGCTTGAATCAGGTCAAAATTAAGGAAGACAGTGTTCTTATTTCGCTAGAGGACGATATTAACCTCCCACCCCAGCCTCATCTTCAAGCAGCGTTTAAGaacgatgatgataatgacgaCGAGCTCCCTGCTCCTCCCCTTAGCGGTACTGATTTGATTACGTTTAGTGAATCTGAAGACCAACGCGAACGTTCAGACGTTGAGAACGATATTTTTCTAGTTCAGCCGGGTGCTTCGAATGCACAAGGAAAAGCAATTAATACCCCACCAGTCATGGAATGCACGTGTGAGAATCTAAAGCTCATGGAGCCTGTCCAGGAGCGCAAATTGTCCAAGAATTCTCTGTTCTTTGACACGGAAGATAGCGTAGAGGTTGGTCGTCCTGCACCCGTTGTTATTACACTGAACAGAAACGGACCGGTTAAGGCTGCTGTGGCCGTCAAACGAAGCAATAGCTCATCAGGGAGTAGCACAGGTAGTTCCAGTTCAGGTCGATTACCAATTTCACAATCAGTTTCTACTGATGTCCACCACGAGAAATCTGCCCCCAGTTTTTCTCCCTCAATACGACAAAATTCTCTCCCGGAGCCTAGTCACGTAATACGACCCCACTCTGCCTCGGATGTTGTCACTATCGAACATCGGcccaaatttttaagaaagagcCCGCCGGTTGATTCGGACAGCGAACCTGAGTCGTTCGCGCAGGCGTCGGATCCGTTGATTCCCGAACCAACGAAAGAAGATAAAGACTTACAGCGCTGTAGTCGTGATTCAAACGACTTTCCACCACCTCCACCGTCCATCGAAGACAGCTCAAATTTCGACCAAGGGGACTGCCCTTGGGTGCCACTTATGAATCGATTTCAGGTCGAGGCTGGTGGTTCGTCTGTGTCAGAAAGCGAGCAACCGCTGTTACCGGATCGTCGTCCCAGGCCTAAATCGTCAACGGGtgtgattgaaaataaagcgCCCAAATTTCGCACGTATACTCCGAAACCAAAACCAACTTACGTGGAGACGAAAAGTAACCAACATCAAAACCTGAAAAGCGAGACTTGTGTGTGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan
PF13637 all species →	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan
PF07693 all species →	KAP_NTPase	KAP family P-loop domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR052771 all species →	Family	Neurotrophin-activated signaling adaptor	Interproscan
IPR011646 all species →	Domain	KAP family P-loop domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24116 all species →	KINASE D-INTERACTING SUBSTRATE OF 220 KDA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0019887 all species →	Molecular Function	protein kinase regulator activity	Interproscan
GO:0030165 all species →	Molecular Function	PDZ domain binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12460	KIDINS220, ARMS; ankyrin repeat-rich membrane spanning protein	-	Neurotrophin signaling pathway	ko04722	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.