Gene detail

Detailed information of RMX44948.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2929:179413...194280
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00017104

ATGGCGGCTGCGAAGGAtgctgttgttattattttggaTGTGGGCCCTTCGATGTGTCAGGCCCCCCCTGGCCATTCCACCTCACTTGAGATATCAGTCAAGGCTGTCAACATGATTATACAAAGAAAGatgTTTGCAAATACAAAAGATGAATTTGCTTTAGTTCTGTTTGGTACTGAAGGAACATCAAAccaattgaatgaaaatgatggGGAATATGAGAATATCACTGTGGCTCGCAGACTTGGTTTGCCTGATTTAGAACTGCTTCGTTTTATCCATGACCAGATAGCCCCTGTCATTGATGCCATCGTGGTTGGTGTGGATTTGTTGCGAGAACAGACAGTaggaaagaagtgtgaaaaaaagatatatttattCAGTGACCTTGGATCACCATTTGGAAACGATCAGCTGGAGACCATCACAGAAGGCCTCAAAAGCTTGCAAGTCCACTTGACATTAATAGGACCTGATCTTTATGATGATGAGGATGAGATAACTTGTGCCACAGATGGAAGTGGACCTTCAACTTCAGTTCCAGatcacagaaaagaaagaacaccACAGCAGGTGGCAGGGGAAAACTGTATGAGACAAATGTTGGAAGCTTTAGATGGCGAGACATATTCCTTTAGtcatgtTCTACCGATGCTGAGCTTTTTCCAGACAAgatcaatcaaacaaaccaCTGTGTTTAGAGGACCTCTGGAGATTGGCTCTcagctgaaaataaatgtttatggGTACAATAGGGTAAGGGAGGAGAAGTTACCACCCTGGAAGAAGTTGTCAGCTGTTTCTCAAATGTCTCCTAACCCTGACACAATGGAAGTACAGATGCAACGGTCATATCACTTGATTGATGAAGATGATACTGaagttgacaaagaaaatgtagcCCAAGGGTACAGGTATGGAAAGACGTTGGTTCCCTTGACCAAGATTGACAAAGACAGCATGAAACTTCCCACAGAAAGATGTTTATCCTTACTCTGTTTCACTTCCAATGAAAATGTCCGGAGATATCAGTATGTTGGAGACAATGTAATAGCCTTTGTTCCACAGCCAGGTGATCAGaatgggCAGGCCACAGAGGCACTTAAATGTAGCAGAACTTTTAACCCTGCTCGACAAAGAGTTTTCCAGTGCATTCAACATCGTGCTCTTAACCCAGATGATCCATCATTACCAGATTTAGATCCTGTGATTGCAAGTTATTTGGAGCCAAGCACAGAGTTCAAAGCAAGATGTGCTCCTGAGTGTATGAAAATTAAGGATATGTTCCgccttgaaaaaattgaaaaaaagaaagagtacaCAGCTGAACACATATTCAAACCAATTGTAGACAAGCCAAATGGAGAACCATCAACCAGCAGAACAAATGCTTTTGATGAAACTGACTTCAGTATGGCAAGTTTGGCAAGAGGGTCGATCACTAAGGTTGGAACAGTTGATCCAGTTGGAGACTTCCGTACTCTCATCACCAGACGGGATGAAGACAGGTTTGATGAAGCTGCCAAACAAATGAGAGAGTGTATTGTGCAGCTGGTGTTAGATGCATTTGGAGATCAGTTTTATTCAAAGGCCCTTCAGTGTGTAAATGTACTGAGAGAGGAAGCTATCAAGGCTGGGGAATCTTTGATGTTTAACACATTTCTGCAAGAGTTGAAAGAGAAGATCGTCAATAAATTAGGCCATAGATTTTGGCTTCTGATAGTGAAAAaGGAAGTAACCTTAATTAGTCAAACTGAATCTCCAGATAGTAATGTCACAGACAATCAAGCTAAAGAGTTTTTAGAAGGTCATGATGGTGCTGTTGAAAAGGAAGAACGTCCAGCCAATGATTATACAGACGATGCTGAGGATCTTCTTGAGCTGATGGAATGAGATTGATTCAGAAGAAGATTGTGCTGCTTGGAGTGGCCCATGAGGAGGATCAAGTAAACGAGCCACTTTCTTAAGATTTTCATGTGTAATAGTTAATATGTCCTGTTTTGTCAAGAATCCTTTTCTCTCAGTATCCAAaagctgatgaaaaattttaaaaggttctTCACTTAGTTTGTCTTTATCATGGTCCCCCTCTCTGTCTTCTTGTTGCTGCCATAGATCAAGAAAtgtatattttgttaaaacatcttcatttctttccttcatgGTTGCTAGTATGCTATAACGCAGAACCTCCACGTTCATGTAACCCAT

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08785 all species →	Ku_PK_bind	Ku C terminal domain like	Domain	Interproscan
PF03730 all species →	Ku_C	Ku70/Ku80 C-terminal arm	Family	Interproscan
PF02735 all species →	Ku	Ku70/Ku80 beta-barrel domain	Domain	Interproscan
PF03731 all species →	Ku_N	Ku70/Ku80 N-terminal alpha/beta domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014893 all species →	Domain	Ku, C-terminal	Interproscan
IPR036494 all species →	Homologous_superfamily	Ku, C-terminal domain superfamily	Interproscan
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR005160 all species →	Domain	Ku70/Ku80 C-terminal arm	Interproscan
IPR016194 all species →	Homologous_superfamily	SPOC-like, C-terminal domain superfamily	Interproscan
IPR006164 all species →	Domain	Ku70/Ku80 beta-barrel domain	Interproscan
IPR005161 all species →	Domain	Ku70/Ku80, N-terminal alpha/beta	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12604 all species →	KU AUTOANTIGEN DNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000723 all species →	Biological Process	telomere maintenance	Interproscan
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0006303 all species →	Biological Process	double-strand break repair via nonhomologous end joining	Interproscan
GO:0042162 all species →	Molecular Function	telomeric DNA binding	Interproscan
GO:0043564 all species →	Cellular Component	Ku70:Ku80 complex	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003678 all species →	Molecular Function	DNA helicase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10885	XRCC5, KU80, G22P2; ATP-dependent DNA helicase 2 subunit 2	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.