Gene detail

Detailed information of RMX45232.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2844:654924...663144
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00000788

TGTCAGTAGAGAACCGCCAAAACTTGAGCAGATTTCTGCGCGGTTCTAGAAGTCTTAACTTCTGAgcgaattttgttttactttgctttgAGTTTAGCTTACTTTCCAAAATGGCTACAACTGTAATATCACCTCGCACTCCGGCGTCTTCAGCGAGGGTCGAGGTGGCCTCCCCGACGAAGATGACCCGGAttcaagaaaaggaagaacttCAACACTTGAACGATCGTCTCGCCGTTTACATTGACAGAGTCAAATTCTTGGAAGAAACGAACAGCAAGTTGACAGCAGAAATTACTGTGATAACGAGCAAAAAACAGACTGAAATTGAAACCGTGAGGAACTCGCTTGAAGCAGAGCTGAGGGATGTGAGGAGGTTGTTGGACGAGGTCGCAAAGGACAAGGCACGCGAGCAGATCGAGAACAAGAAGAACTCCGCACTGGTTGAGGAATTCAAGAAGAAGTTTGAGAAAGCAGCTGCAGCACACAAGAACAGTGAAGATGCCTTGAAAGCATCTCAGAGAAAGTTGTGTGATCGAGATGCACAGCTAGCAAATGTAAATCAAGAGGCAAAGAAGTTAGAAGCAGTTATCCAGGACCTAAGGAAAGAGTGCCAAGAACTGAAGGATGCTTTGGAATCAGCTAAATATGCCCTTGAGCAGGAGACCCTATCAAGAGTGGACCTCGAGAACAAACTCCAGTCCAAAGAAGAAGAACTCAATTTCAAGAAAGAGATGTACAGTAAGgAAATGATTGAGATCCGTTCTCAGTTACAAAGTGTAGAGTCACAGCGCAGCAAAATAGAAGCTGAAGCGAAGAACAGATATGAAGGAATCTTGTCAGAAAAGCTACATGAACTGAGAGAGATGTTTGATAGCGAGGCCAGGCAATATAAAGATGAAACTGATGGTCTTTATGGTGCTAAGtatGATGAACTCCAGAGGATGAACACAAAGGATTTGGAGGAGTTGACACTGatcagagaagaaaaaagaactttgtcAATCACtgttgaaaatatcaaatcaGAACTAAACCAGTTGCAGTCCAAGAATTCAAGCTTGTTACAAAGAATTGAAGACTTAGAAAGTTTGCGTGCTAGTGACCAAAAGATAGCTGATGAGGCAATAGCAAACAGAGATGCACAAATCAAAGAACTACGCAAGAGAATTGATGCTCAACTCAGGGAATATGAGGATCTTATGGGAGTGAAGACTGCTCTTGATCTGGAGATTTTGACTTACAGAAAGATGTTAGAAGGAGAGGAATCAAGGTTGAACATAACTCCCCCAGCTTCCCCAGTATTTGGAGCTTCTGCAAAAAGTGGCAGACGTTCTGCTAAGCGAATCCGCACAGAGGAAGAGACTGTAGAAACTAAGTATTCAAACAAAGGTTACATTCAGATAAAAGAGGCAAGTGCAGATGGTACCTTTGTCAAGCTGTTCAACAGTGGAGCCAATGATATGCCTCTTGGTGGCTGGAGTTTGGAAAAATCAGTAGATGGGGAACCACCTGTAATCTACAAGTTCACACCGAAATATGTCTTGAAAAGTGGATTTTATGTAACAATTTGGGCATCCCAAGGTGGCGGCCAGCATAAACCACCTTCAGAACTGGTATTTAGACAGAAAGCCAGCTGGGGTGTtggtaaagaaacaaaaacagtgtTGAAAGATGCAGATGGCCAGGAAGCAGCTTCTGCAATTGTTGAAGAAGTCAGCATTAGGACTGATGAAATTGACAGTCGGCGACAAAGTATGATGTCTGGACAACGTGAGgGTGAAACTAGCAAAGGTTGTGTAATTCAGTAGTGCTACAACTTTTCAATTGTAACAACtgattttgagctttttaGTCAGTCCTTCAGtttgaagaacaaaataaaattatgagcTATATCTTTTTGTGTAGAAAAAGAACTTGCCAAagtacttttttatttgtaaaaccTGTTTGTAGTACAATTTTTTAACCCAAATTTTCAATACTCCAATTGATTGTCTACATTCTATCATCACATTCTGCTTAAGGTAAACTACGTTTccattgtatttattttgaatgaaatcttCAGTGTACAAGGGCTTCTAAAGCTTTTATCATAACAGCAGCCtaaacattttgttcattaaacttaatttttagaacaagaataatatattttgtgtGGGGCTTTAAAAGATGGTGGTGTTGATGCATTCCAGTGATACATTGTGTGCATTTTTCTGAAAGGGAAAGTTTTAAAGGACCTGCTCAAAGATTTATCTTATGAGACAAGGTGAACAGGTCAAGTACTTGAATGCAATTTGTGCGTGGAATTTCCTTAACTTTTCTAAAGGGCagactggaaaatatttttctctaacattttcacttttcttcttttctaaaatatcTTGTATGTTTTGTACTTTTCTGGTTTGCCAGTAAAACTTggagtcttttctttttaagatgtATTCATTGAGGTGAGATTTTGTATGCAGTAGGTTGACCATGCAGTTTTTGTCTGCAGTATGAATAAACTGACCACCTGTCAATCAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00932 all species →	LTD	Lamin Tail Domain	Domain	Interproscan
PF00038 all species →	Filament	Intermediate filament protein	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039008 all species →	Domain	Intermediate filament, rod domain	Interproscan
IPR001322 all species →	Domain	Lamin tail domain	Interproscan
IPR036415 all species →	Homologous_superfamily	Lamin tail domain superfamily	Interproscan
IPR018039 all species →	Conserved_site	Intermediate filament protein, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45721 all species →	LAMIN DM0-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005200 all species →	Molecular Function	structural constituent of cytoskeleton	Interproscan
GO:0005635 all species →	Cellular Component	nuclear envelope	Interproscan
GO:0005652 all species →	Cellular Component	nuclear lamina	Interproscan
GO:0006998 all species →	Biological Process	nuclear envelope organization	Interproscan
GO:0007097 all species →	Biological Process	nuclear migration	Interproscan
GO:0031507 all species →	Biological Process	heterochromatin formation	Interproscan
GO:0051664 all species →	Biological Process	nuclear pore localization	Interproscan
GO:0090435 all species →	Biological Process	protein localization to nuclear envelope	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX45232.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.