Gene detail

Detailed information of RMX45248.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2844:926517...936885
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00000823

ATGGGGCTGAGTGACGGAATTTTGGTAGTTGTTTCGGTTCTTGAAGGGCGAAGATTTCCTAAACGACCACGACACAAGATCATTGTCGAAACAAAGTTTGATGGAGAAACTCTGACGACAGATCCCATTGATCATGTGGAAACCCCAGAGTTCACAACTGAACTTGCTTGGGAATTGAACAAAAAGTCTTTGCATCAGCATCGCTTGCAGAGAACACCAATCAAAATCCAGAGAGCACAATGGTATTCCCTCCTGAGTACAAAGTACCAAAGAATGAAACCAGAGTTGAAGTTGATGTTGTCATTAGAAGATGACACTCAGTCTAAACAGACTGAACAACAGTCACAACAAGAAGATGAGAGGCAACACCCAAGACCCTCTCCACCAAGAAAACCAGAATCTGATGGGATACAGTGTCTGCTTAATGAAGATCAAGGGTATTATGAAATTGGACCACAACATGAAGATGACAAGATTTTTATTTTGTCCGTTACAATTGGACTTGCCTCTAATTTAGCTAAGTTGGTACCATCTAGCTTTGCTTTGCCAGATCCAAACCTTGGTGGTGGATTTTATTTTTATTACTCATTACTGAGCAATGATGTGACAAATGAAGTCTTTCATGATCTTCTTCAACCAAACTTTCCTGCTGAGCGAGCTTCAGTGAGAATAAGAAGTAACTTGGAACTTCTCAGAACATTTTTCACCCAACATTCAGGGCTGGAGGTCTATTTGTGTTGTGGGGACCAGTCCTTAGGCAAAGCTGTAGTCTCTTTTCAAGGCCTTCTCAATGAGCAGCAAAACTTAGCATCACCAACTGTAATTGAAGGGCTATTTCCATTAATTGCACCTGGTCGTAGTCGCCAATCTTCAGGAGCAGTAGATGACTCTGAGCCAGCTGTTGGTGTGTCTGTGTCTTTAAGACAAGAGCAGCAGGAGACAATGGGAAATAGGGTACCTGAAGTAGACAGCCTGCCATATGGAAGCAAATCTCCAGCTAAACAGCTTTCAAGCTCCCCTTTTAGAGGAAAGCAGAAAGAGCCTGGTAAAGGGTCAGAGACAGAGATTACTGGAGAGCACCTCAAGGGTACACCACCTCGACCACAATCCAGCACTCCACACAGTGGCCCAGAAAAACTAGGGTTAGAAGGTGGGGTCACTTTGGGAGCTCAAAAGAACTCTCCTTCAAAGAAATCAAAGACAGCCCAGGCTTCTCAACCACAAATATCAGCTCCAGGCCCCAGCAGCACTGTTCCTTTACTTGGAACGAGGCTACCAATTGATCCAGGAGCACACCACTTCTGTTTTTCTATTGACCTGCGCAGTATTTCCAATCTTGATGTAACATCTCCTGTTAACTGTTTCCTCAGGTACACATATCCTTTCTTTGGCAGTGCTGCACCTGTTATCACTAGTCCTCCTGTACAAGTCCAACGCAACATGGAAGTTCTTCTACCAAAATCATTCTGTGCCTTTGACTTTGCATCATCGCCAATACTTCTTCAACAAACTCTCACAAGGCCTGCTCGGAGAATCGGTGAGCTTCATGTGGTTCTCGGTTTAGAGGACATGGGCCCAGTGAACATACAGCGCTTGATGGAGGCAAACGAGTGCCATAGGAAATGTATAAAGAACAGTATGGAGAAGATTCTTTCCTCTTCACTTGAAAGTAGCCAGACATCTAGTGCCATTCCTCTCTCTGAGCCGCAGCGTGTTCCGCCCGCTCAGCCCAAGCCTCCTCCTGTTACTGACCCACGTGACACAGAAGAGTACAAGACCGCGTTAGAACTGGAGCTTTGGAAGGAGCAACAGGAAGAGATGTTTCAAGCACAGATGCAGCATCGAGAAAACTCGCACATGAAAGCTCTTGCTGAGGAATGGAAAAGACGAGATAAAGAGCGCGAACTGATGGTGAAGAAAAAGCTGGAAGAATATTCAAGATTGGAAGAAAAGATCAAACAGTCCATCGCTGATCTGGAGAGGAGAGAAAAACTTTTGTCCACCAATGAGGCTCAGGTGATGCACTTGAAGGAAGAACTGGAACGAGAACACGAACGACGGACTACAGAAATGAGAGAAGCTGCTCGAAGATTGAAAGATGACTGCTCACATCAAGTAGAAATGGAGAGAATGAAAGTCAAGGACCTGGAGGAACAGAAACAGAGACTAGTGGAGCAAGTTTACGAAGCAGAGAAACGATATCAAGCGAAAGAGAATGAGTTCATGGCTTACAAGGAGCAACAGCTGACGAAACCTGAAGTAAAGCTCGAGTCCGAAATAAATCTTTTAAAAATGGAAAAGACAGAACTTGAACGTAAGTTAGAAACGGCGAACAAGTCAAAGATTCACTACAAACAGCAATGGGGCCGAGCGCTAAGGGAACTGGCGCGACTGAAACAGCAAGAACAGACCGCTGCCAGAGCGCGGCTCAAAAAACAAGAGCAAGAGCTGGAACACATGCGCCTGCGTTATCTTGCCGCCGAAGAGAAGGAGGTTGTTAAATCTGAGAAAGAAGAGCTGGAGGAAATAAAACTTGAGTTAGCCAGATTAAAACAACAGGAGGAGGCGAAAGCACGGGTAAATCAAGCGCCGACTGAAGAGCAGGAAAAAACATCAGCCGCCAATTCGTCACAAAGAAGAAGTGTTAAGCATTCACCTGGACTCACATCTGTTCATGAACATGACGAAGAAGACATTGATAGCAGAATAGCGAAACTGATCGAGGAAAGAGATACGCTGTTACATACGGGAGTTTATACCACTGATGATCGTATAATAGTTGAACTAGATCGACAAATAAGAGACGCTATAGCCAGTAGGGGCACGTGA

Transcript

rna-pdam_00000823

gcGGAATTTTGTGAATTCATCGCTGTGTCGTTTTCAAGGTATTGGAGCCACAGATAGCGAGTGAATATCTTACTGGTAATTTAATCTGGTGTAAATGGGGCTGAGTGACGGAATTTTGGTAGTTGTTTCGGTTCTTGAAGGGCGAAGATTTCCTAAACGACCACGACACAAGATCATTGTCGAAACAAAGTTTGATGGAGAAACTCTGACGACAGATCCCATTGATCATGTGGAAACCCCAGAGTTCACAACTGAACTTGCTTGGGAATTGAACAAAAAGTCTTTGCATCAGCATCGCTTGCAGAGAACACCAATCAAAATCCAGagagCACAATGGTATTCCCTCCTGAGTACAAAGTACCAAAGAATGAAACCAGAGTTGAAGTTGATGTTGTCATTAGAAGATGACACTCAGTCTAAACAGACTGAACAACAGTCACAACAAGAAGATGAgaGGCAACACCCAAGACCCTCTCCACCAAGAAAACCAGAATCTGATGGGATACAGTGTCTGCTTAATGAAGATCAAGGGTATTATGAAATTGGACCACAACATGAAGATGacaagatttttattttgtccgTTACAATTGGACTTGCCTCTAATTTAGCTAAGtTGGTACCATCTAGCTTTGCTTTGCCAGATCCAAACCTTGGTGgtggattttatttttattactcatTACTGAGCAATGATGTGACAAATGAAGTCTTTCATGATCTTCTTCAACCAAACTTTCCTGCTGAGCGAGCTTCAGTGAGAATAAGAAGTAACTTGGAACTTCTCAGAACATTTTTCACCCAACATTCAGGGCTGGAGGTCTATTTGTGTTGTGGGGACCAGTCCTTAGGCAAAGCTGTAGTCTCTTTTCAAGGCCTTCTCAATGAGCAGCAAAACTTAGCATCACCAACTGTAATTGAAGGGCTATTTCCATTAATTGCACCTGGTCGTAGTCGCCAATCTTCAGGAGCAGTAGATGACTCTGAGCCAGCTGTTGGTGTGTCTGTGTCTTTAAGACAAGAGCAGCAGGAGACAATGGGAAATaGGGTACCTGAAGTAGACAGCCTGCCATATGGAAGCAAATCTCCAGCTAAACAGCTTTCAAGCTCCCCTTTTAGAGGAAAGCAGAAAGAGCCTGGTAAAGGGTCAGAGACAGAGATTACTGGAGAGCACCTCAAGGGTACACCACCTCGACCACAATCCAGCACTCCACACAGTGGCCCAGAAAAACTAGGGTTAGAAGGTGGGGTCACTTTGGGAGCTCAAAAGaaCTCTCcttcaaagaaatcaaagacaGCCCAGGCTTCTCAACCACAAATATCAGCTCCAGGCCCCAGCAGCACTGTTCCTTTACTTGGAACGAGGCTACCAATTGATCCAGGAGCACACCACTTCTGTTTTTCTATTGACCTGCGCAGTATTTCCAATCTTGATGTAACATCTCCTGTTAACTGTTTCCTCAGGTACACATATCCTTTCTTTGGCAGTGCTGCACCTGTTATCACTAGTCCTCCTGTACAAGTCCAACGCAACATGGAAGTTCTTCTACCAAAATCATTCTGTGCCTTTGACTTTGCATCATCGCCAATACTTCTTCAACAAACTCTCACAAGGCCTGCTCGGAGAATCGGTGAGCTTCATGTGGTTCTCGGTTTAGAGGACATGGGCCCAGTGAACATACAGCGCTTGATGGAGGCAAACGAGtgccataggaaatgtataaagaacagtatggagaagatTCTTTCCTCTTCACTTGAAAGTAGCCAGACATCTAGTGCCATTCCTCTCTCTGAGCCGCAGCGTGTTCCGCCCGCTCAGCCCAAGCCTCCTCCTGTTACTGACCCACGTGACACAGAAGAGTACAAGACCGCGTTAGAACTGGAGCTTTGGAAGGAGCAACAGGAAGAGATGTTTCAAGCACAGATGCAGCATCGAGAAAACTCGCACATGAAAGCTCTTGCTGAGGAATGGAAAAGACGAGATAAAGAGCGCGAACTGATGGTGAAGAAAAAGCTGGAAGAATATTCAAGATTGGAAGAAAAGATCAAACAGTCCATCGCTGATCTGGAGAGgagagaaaaacttttgtcCACCAATGAGGCTCAGGTGATGCACTTGAAGGAAGAACTGGAACGAGAACACGAACGACGGACTACAGAAATGAGAGAAGCTGCTCGAAGATTGAAAGATGACTGCTCACATCAAGTAGAAATGGAGAgaatgAAAGTCAAGGACCTGGAGGAACAGAAACAGAGACTAGTGGAGCAAGTTTACGAAGCAGAGAAACGATATCAAGCGAAAGAGAATGAGTTCATGGCTTACAAGGAGCAACAGCTGACGAAACCTGAAGTAAAGCTCGAGTCCgaaataaatcttttaaaaatggaaaagACAGAACTTGAACGTAAGTTAGAAACGGCGAACAAGTCAAAGATTCACTACAAACAGCAATGGGGCCGAGCGCTAAGGGAACTGGCGCGACTGAAACAGCAAGAACAGACCGCTGCCAGAGCGCGGCTCAAAAAACAAGAGCAAGAGCTGGAACACATGCGCCTGCGTTATCTTGCCGCCGAAGAGAAGGAGGTTGTTAAATCTGAGAAAGAAGAGCTGgaggaaataaaacttgagTTAGCCAGATTAAAACAACAGGAGGAGGCGAAAGCACGGGTAAATCAAGCGCCGACTGAAGAGCAGGAAAAAACATCAGCCGCCAATTCGTCACAAAGAAGAAGTGTTAAGCATTCACCTGGACTCACATCTGTTCATGAACATGACGAAGAAGACATTGATAGCAGAATAGCGAAACTGATCGAGGAAAGAGATACGCTGTTACATACGGGAGTTTATACCACTGATGATCGTATAATAGTTGAACTAGATCGACAAATAAGAGACGCTATAGCCAGTAGGGGCACGTGATATAAGGGGAGAAGGTTAGGGTTGGTTCGAATTAATCCGGATTGGTTTATTGATTGCAATTTTCTTGATGTGAAAAATCAGGAGTAGTGCGGTGAAGAaaagagggaggggaggggaggggtttGGGGAtgctagagaaaaaaaagtaagaatcGTTGAAATAAGCACTGCGCACTTCCGGTAGGgcaggggaggggggggggacaTTTGAGATTTGAGAAGGGGCCCGGAATCGTtagactacgagcagtccctCTGGGAAGATACGTTTcgtacaatttaaaaatttcttgcgCAATCTCTGCTGCTGCTTGGCTTCATTGCTCGAAaaattgcattatttttcGGTGACGCCGGTTGAGGTTGTTGCCAAGGAGAGTAAAGAGTCTATCCAAAGGCGTGTGAAAGTGGTTTGCAACTAAAAATCTGTACGCTGTACGTATTCTGCTGTTCAGGACACTCAGACGCACTCTGACTGATACAGCCAAGTTTGCAGTGGGAAGGAGCAGCCTTAACGAAACTTTCTCCCCATCGAACTCCCGTAGACAATGCCATCACagtttttggataaaaaacaaagcaaaacaaagacgCAGATGTTGTTGATGAAGTATTTTTACTTTCCGAGCATTCTTTGAATCTACTAGTAATTTAAATAACTAAATGAATGCAATTTTCGCTGTTTAAAATCTGAATATAATGCGTTTACaaagtttctttgtaaatatacATAGGCGTGtccttttttt

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12416 all species →	DUF3668	Cep120 protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039893 all species →	Family	Centrosomal protein of 120kDa-like	Interproscan
IPR022136 all species →	Domain	Domain of unknown function DUF3668	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21574 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0005814 all species →	Cellular Component	centriole	Interproscan
GO:0007098 all species →	Biological Process	centrosome cycle	Interproscan
GO:0022027 all species →	Biological Process	interkinetic nuclear migration	Interproscan
GO:1903724 all species →	Biological Process	positive regulation of centriole elongation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16459	CEP120; centrosomal protein CEP120	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.