Gene detail

Detailed information of RMX45303.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2844:182058...204899
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00000736

GAGACGAAAATTGCCGCCATTTTGAAAATTTTACCACAATACACCGGGCACTTGCCAAGATACACCGCTGACAAGATATGTTACTTTGTAACTTTTGGAAGTGACTCTTCCTGGTCAAATCTAAATGGGGTTGATGCAAAGAAAAAAACAATAATGTTGATCCAGGAAGATCTCCCAAGAACTCCCCTAAACTGGGATCACATGATGCATCTTTCATCCTTCACCCTAAAGACAGCACAAGAAGCACAAGTTCCAGCAAAGGAGAGACTTAGGCAAACTAAGGAATTGTTAGCAAAAGGGAACCAGTGGACAAAAGAGATGGAGATGAGATTGACAGACACTGATGTGGTGCTTTTAGATGGGGAGACACAGGATGTAGTAGAAGTGTTTTCATTGAACACTGTAGGCCATGTACATCATTTTAGCGATGACCCTGACCTAAACAGTGTGTTAGTATTTAACACTCTGCAAACAGAGAATAAGTTTGCTGCTATGCATCTGTTTCAGTCAGACAGGGTTCCGGCTGCTGTTGTTGCAACTGAAATTATGAAAGCATCGAGTAGCAAAGCCGCAATGCCAAACAAATTTGCAGCAAAAGGAGGCGCCATACTACCCCCACCCCCTACACACCCAGCGCCCCCTCCCCCCACGGGGGTTGACCAGGAGAGATTAGATTTGTATGGAAAGTCACTTGTGGCACAAACGATTGCAGCCTTCTCAGCAGCCGTGTCTGATACCAGTCCGAAGAAAACTGGAAAACCACAAGTGTCATCAAGATACCAAGCGGGAGAAACATCCTCCGATGTTCCAGACGAAACACTGTCTGCGGAACTGTTGGAGGCGAGAACAAACAGAGATGTGCAAATCTTGAACCACTGTATAGATGATATCGAGAACTTAGTTATGAGAACAAAGAGATCGGCTGAGGCCTGGAAAAAGCTGCAGAAAAAGAAGGGAAAAGTTAAACAAAGTTCTTTGTCACTTGAAGCGCGCCCGCCGCCTGAGGCTGAATTCTTTGATGCATTTCAGAAATTAAAACATGCCTTGATCTTGTTGGGCAAGCTGAGGCAACACATTCACAATCCTAACGCAGCTGAATTGGTTCACTATTTATTTGTTCCCCTTTCGTTGTTGATTCGCTGTACAGGAGGCCCCGAGAAGGCCAGAGCAGTTATTGTGCCTCTGCTTACAACTCAAACGATAGACTTGCTACAGAACTGTCTCTCCTCAAAGGAAACCGAATTATGGATGTCTCTAGGACCCAACTGGACGATGCCAAAGTCAAGCAAACAGTTCAAGGATCAGTTTATCGCCCCATACAATCCTGTGTTCAAGGACGGTTGGGTTCCACCTGAAGTGATCGCTGGTAAAGATGTGTCCAACCTTAGTGCCGCTATTGCTGCTAATGCTGCCGCTGTGGCCCAACTCAATGATGGATCCAGAAAAGGAGATGATTCTGCTGCAAACCTGGCCAATCCAGCGGTGCTATCAGCAGCAGCCAAGTTCAGAAGACTAGCAAGTTTGAAAGAATCTTCAGAATCACCGCTATCAAGTCCGCCCAAGAAAGGCCTGAGAAGAGTGCGCGTCCTTTACGATTTTCAAGCAAGAAACAGCAAAGAACTGACGGTTCGCCAGGGAGAAGAAGTTTCGGTTCTTCTTGATAGCCGCCAGTGGTGGTGCGTCAGAAACTCTGAGGGCTCCATAGGCTTTGTACCGAGTACAATTGTGGAAGAAACAGGTGAAGTATTTTATGTTGTGACCCCTCAGTGTCGAAGTGGTAGTGACCGAACGGTTTTGCTTCCCAGTCCTCCGACAACGGCTCCTCCACCCATACCAACAGCGCTGGTTACGTCATCGCAGACACTGGTACAAAAACCTGATACAGCAACTGGCACAGTGTCAGAGAGTCCAAAGATTCCTCATGTGGAGCTACGACCTGTGGGAATATCCAAGCAGAACAGGCCCGTATCTGCACCTCCCTCGCATATGGTGATAAACCCAACCGTGCCCACAAGCCAACCCCCTTCCACCTCTCCCTCAACTACCTCACCCCCTCCAACAGTAATCTTGAAGACGGTGAAAGAGAAAGAGAAAGAGAAAGAAACCACGCCTGTGGCTACAGACTTTACCAAGGCCATCCAAGCAAGAAATCTGAAAAAAGTTGACCCAGAAGAGGAAAAGAAAAGACGCGAACAGGCTCAACAGAACAGAATGAGCTCAGCAGACATGTTAAACGATGAACTCAAGCGAAGAATGACTCACAGTCAGGGGGGACTCACACCAACAGCCCAACGGAAAGACACACCGACCGTTAATCTGACGGCTGATTCAAACGCAAAGCAGGTCAAAGAGTGGTTGAAAAGTAAAGGTTTTAGTGACAGCTGTGTGGCGGCATTGTCTGGCAAGTCCGCTAAAGACATTGAATCTATGACAAAGGATCAGCTGAGACAAGCTTGTGGTGACGCAGATGGATCAAGGGTGTTTAGTCAGTTTTCAGTGCAGAAAGCCAATTGGAAGGTAACAACTAAAGGTTCTGAATTGGCGTTTATTATGCAAAAACGAAAGGAACGATCAGAAGAAAAAGAGGTACCAGAGAATGATGGCGAGCTCCGCGTTATCGTAGCCGATGCCAAGGCAGCGGCAGCCAAAGAGGAGACCGAGATCAGGCAAAGAACGTCCAGCACTGGACAGAAATCAAAGAAACCAGGTGCCCCTCCACCGAAACCTCGACCTAAGAGCTTTGCAGAGCCTGAAGTTAAGCCGCGTACAAATAGCCAGACGGACCAGAGTTCACCGCAAGAGATGTCCTTTGACACTGAGTTTATCCCACCCCCACCAGTGCTAGATGCCGAAGATCAGCCGACAAATGACGAAGAAGGTCCGAGGGAGAGAAAGATTTCCGTCGAAGATGTCAAAAGTATTATGCAAGAACAGAAGAAACAGCAGGAACTTTTGTTGGAACACGACAAAACGCTTTTCCTGCTGGAGCAGCTTCAGAGACAAAAATTCGAGCTGGAACAACAGAAAAGGGAGTTTGAAGAACAACAGCAGAAGTTGAAGCAAGCCGAGTTACAGGAACAGCAGAAAGAGCTGCATCGTCAAATACAAGCGCAGCAAGATCAACTGAAGGTGAACGAGGACAAATTAGTGCAGCAACAACGCCTGCTTTCCAACTACGAAAACGTGCCCCCGCAATACACTTACGCCCAGATTCCCCCTGTTATGCCCCAGATGCCTGTAATGCCCCTTGCGGGGGTTACAACAGGGGCTTCGGCGTACCTCCCCATGGGGGGCCTTCAACCCGTGTACTCAGCGTACCCTGGTGCGATGGCTCAACCGGGCGTCACACATATGGTGCCTTCCATGGGTCTTCCCTCAGTAGCTCCTACACAGCCGCCTACTCAGGGGTGA

Transcript

rna-pdam_00000736

GAGACGAAAattgccgccattttgaaaattttaccacAATACACCGGGCACTTGCCAAGATACACCGCTGACAAGATATGTTACTTTGTAACTTTTGGAAGTGACTCTTCCTGGTCAAATCTAAATGGGGTTGatgcaaagaaaaaaacaATAATGTTGATCCAGGAAGATCTCCCAAGAACTCCCCTAAACTGGGATCACATGATGCATCTTTCATCCTTCACCCTAAAGACAGCACAAGAAGCACAAGTTCCAGCAAAGGAGAGACTTAGGCAAACTAAGGAATTGTTAGCAAAAGGGAACCAGTGGACAAAAGAGATGGAGATGAGATTGACAGACACTGATGTGGTGCTTTTAGATGGGGAGACACAGGATGTAGTAGAAGTGTTTTCATTGAACACTGTAGGCCATGTACATCATTTTAGCGATGACCCTGACCTAAACAGTGTGTTAGTATTTAACACTCTGCAAACAGAGAATAAGTTTGCTGCTATGCATCTGTTTCAGTCAGACAGGGTTCCGGCTGCTGTTGTTGCAACTGAAATTATGAAAGCATCGAGTAGCAAAGCCgcaATGCCAAACAAATTTGCAGCAAAAGGAGGCGCCATACTACCCCCACCCCCTACACACCCAgcgccccctccccccacgGGGGTTGACCAGGAGAGATTAGATTTGTATGGAAAGTCACTTGTGGCACAAACGATTGCAGCCTTCTCAGCAGCCGTGTCTGATACCAGTCCgaagaaaactggaaaacCACAAGTGTCATCAAGATACCAAGCGGGAGAAACATCCTCCGATGTTCCAGACGAAACACTGTCTGCGGAACTGTTGGAGGCGAGAACAAACAGAGATGTGCAAATCTTGAACCACTGTATAGATGATATCGAGAACTTAGTTATGAGAACAAAGAGATCGGCTGAGGCCTGGAAAAAGCTGCagaaaaagaagggaaaagtTAAACAAAGTTCTTTGTCACTTGAAGCGCGCCCGCCGCCTGAGGCTGAATTCTTTGATGCAtttcagaaattaaaacatgcCTTGATCTTGTTGGGCAAGCTGAGGCAACACATTCACAATCCTAACGCAGCTGAATTGGTTCACTATTTATTTGTTCCCCTTTCGTTGTTGATTCGCTGTACAGGAGGcccCGAGAAGGCCAGAGCAGTTATTGTGCCTCTGCTTACAACTCAAACGATAGACTTGCTACAGAACTGTCTCTCCTCAAAGGAAACCGAATTATGGATGTCTCTAGGACCCAACTGGACGATGCCAAAGTCAAGCAAACAGTTCAAGGATCAGTTTATCGCCCCATACAATCCTGTGTTCAAGGACGGTTGGGTTCCACCTGAAGTGATCGCTGGTAAAGATGTGTCCAACCTTAGTGCCGCTATTGCTGCTAATGCTGCCGCTGTGGCCCAACTCAATGATGGATCCAGAAAAGGAGATGATTCTGCTGCAAACCTGGCCAATCCAGCGGTGCTATCAGCAGCAGCCAAGTTCAGAAGACTAGCAAGTTTGAAAGAATCTTCAGAATCACCGCTATCAAGTCCGCCCAAGAAAGGCCTGAGAAGAGTGCGCGTCCTTTACGATTTTCAAGCAAGAAACAGCAAAGAACTGACGGTTCGCCAGGGAGAAGAAGTTTCGGTTCTTCTTGATAGCCGCCAGTGGTGGTGCGTCAGAAACTCTGAGGGCTCCATAGGCTTTGTACCGAGTACAATTGTGGAAGAAACAGGTGAAGTATTTTATGTTGTGACCCCTCAGTGTCGAAGTGGTAGTGACCGAACGGTTTTGCTTCCCAGTCCTCCGACAACGGCTCCTCCACCCATACCAACAGCGCTGGTTACGTCATCGCAGACACTGgTACAAAAACCTGATACAGCAACTGGCACAGTGTCAGAGAGTCCAAAGATTCCTCATGTGGAGCTACGACCTGTGGGAATATCCAAGCAGAACAGGCCCGTATCTGCACCTCCCTCGCATATGGTGATAAACCCAACCGTGCCCACAAGCCAACCCCCTTCCACCTCTCCCTCAACTACCTCACCCCCTCCAACAGTAATCTTGAAGACggtgaaagagaaagagaaagagaaagaaACCACGCCTGTGGCTACAGACTTTACCAAGGCCATCCAAgcaagaaatctgaaaaaagttgacccagaagaggaaaagaaaagacgCGAACAGGCTCAACAGAACAGAATGAGCTCAGCAGACATGTTAAACGATGAACTCAAGCGAAGAATGACTCACAGTCAGGGGGGACTCACACCAACAGCCCAACGGAAAGACACACCGACCGTTAATCTGACGGCTGATTCAAACGCAAAGCAGGTCAAAGAGTGGTTGAAAAGTAAAGGTTTTAGTGACAGcTGTGTGGCGGCATTGTCTGGCAAGTCCGCTAAAGACATTGAATCTATGACAAAGGATCAGCTGAGACAAGCTTGTGGTGACGCAGATGGATCAAGGGTGTTTAGTCAGTTTTCAGTGCAGAAAGCCAATTGGAAgGTAACAACTAAAGGTTCTGAATTGGCGTTTATTATGCAAAAACGAAAGGAACgatcagaagaaaaagaggtaCCAGAGAATGATGGCGAGCTCCGCGTTATCGTAGCCGATGCCAAGGCAGCGGCAGCCAAAGAGGAGACCGAGATCAGGCAAAGAACGTCCAGCACTGgacagaaatcaaagaaaccaGGTGCCCCTCCACCGAAACCTCGACCTAAGAGCTTTGCAGAGCCTGAAGTTAAGCCGCGTACAAATAGCCAGACGGACCAGAGTTCACCGCAAGAGATGTCCTTTGACACTGAGTTTATCCCACCCCCACCAGTGCTAGATGCCGAAGATCAGCCGACAAATGACGAAGAAGGTCCGAGGgagaGAAAGATTTCCGTCGAAGATGTCAAAAGTATTATGCAAGAACAGAAGAAACAGCAGGAACTTTTGTTGGAACACGACAAAACGCTTTTCCTGCTGGAGCAGcttcagagacaaaaattcGAGCTGGAACAACAGAAAAGGGAGTTTGAAGAACAACAGCAGAAGTTGAAGCAAGCCGAGTTACAGGAACAGCAGAAAGAGCTGCATCGTCAAATACAAGCGCAGCAAGATCAACTGAAGGTGAACGAGGACAAATTAGTGCAGCAACAACGCCTGCTTTCCAACTACGAAAACGTGCCCCCGCAATACACTTACGCCCAGATTCCCCCTGTTATGCCCCAGATGCCTGTAATGCCCCTTGCGGGGGTTACAACAGGGGCTTCGGCGTACCTCCCCATGGGGGGCCTTCAACCCGTGTACTCAGCGTACCCTGGTGCGATGGCTCAACCGGGCGTCACACATATGGTGCCTTCCATGGGTCTTCCCTCAGTAGCTCCTACACAGCCGCCTACTCAGGGGTGATGTGGCCGTGAGATGATTTTGTAGGAATGTATTGTATAATCTAGAGAACCGAAATGTTTTCTATTATTTGCTAGACAAAGTGTGAGATTTGTAAAGGGTTTTCTCTCACACTACCGTAGAGAAAGCCGCAGTTCTGATGATTAACGCCATAGGAATAAACAGGCTTTTTCGGTCTAGTAATAATTTcgagattttgtttgttatacCAACCAATTAGACATGTCGAAAAATCTGTTACGGCGCTGGCCCTGATAAGCAGGATTGTGCCTTGAAATTAGTAGAAAAGGTGCTACCTGTGTATGAAAATCTTCCCAGGTAGCACTTATGAGGGGAGGGGGTTGGGAAGACAGCGTGGGGTGATGGGATGAGATGGGATGAGATATTTCTCCTCTGGGTTTTAGTTAGTAGACGCGGGCATATTTCCATTCGTTACATACATTCATGCAGTTTTCATTCGTCTTCTCCAGATTTCAATCCGTAATTAAAGTACAAATTAGCCCTCCTAATGTGACAACTGCATTGTGTCTTGCTTAAAGAGCTGTTGTGTGTATGACACTTTGCAATCGTTAGCAATGTCACGTAAGGACTACATTCTATGCTGAGGGCTTTGGTCACGCAACTGTTCCGTGACGCATGTTCATCTTCAAGAATTGTGTACAGCTCGCCTTTGTACATTCATTCACATTGCCTTGTGGTTTAACATCTTTCGCCTCTTTAAGAGTCATAGCAACTCGTTAAGATTTGGCATTATCTAGTTTTTTATGTCCGTTGTCCACCTTAGCGCAATGGCAGTTTACTTCTGATTACTTCTTCAAAGTGTCTTTTTTAGAAGGAATCAAAAGTTTCATTCACTATATACATCGTTCCCCTCTTTCAGCTCAAAACTGAAGATAAATAGCGCGTTATATTTTTGTATAGCCCTTAATGGAGTAGATATCTCTGCCTTTTGTACAATGCGATAGTCTGAAGTCGTTTTGTCTAGCTTTGGATAGATGGTCGAATGCAAATTAAGTCAAAGTATGGTTTTTGTAGCTGTATAGACGTTTTCGGATCaattgcattgaaaaaaatatatttctgaaaaacCTGCTCACcagagttttttaattttttcgttgttCTCGTAAAATAGAGgtcgttttaaaataattggtACAAGAATGATTTTTCCGAGGAGAGCCAAGCTTGTTGATTTTGCTGTGTGCCCCATGTTCAGCTTATTTGCTGTAGCGAGATTCGTTTGTGAAAAAGTAGCAAATAAGTTAAGAAGAAATggcaggaaaaaaagagactgCCGGATTTGGAAAGAAAGACACATTTAGTCACTGTTACAAAAGTATCTTGTGAACCACTTTTTTGATCTGTAAGCCCTGGCCTTTACAACGAGACCAAACACAAAACCTACTGTAGGAAGATGAGTGTTAtttgtttaagtttgaaaatcattaGGTGTGTTGGCCTCGTTCGTCCGTGGTAAAAGATGTCCTGACAATCAGCGACTGAAGTACAAATGTTGCTCGTATTTAAGTAAACATGCAGATGCATGGATATTTGtgattatttacaaaattagtGTGATGTACAGAATGAAGAGCTTTTTGCTTTGTATGGCAATTCTCGCTGTATTTACCACTGATCACCATGTAAACTCTCCCGGCTATATTgggttttctttatcattgtAGTTAATTCAAATGAAGGAATGTAGGTTAAACGCAATTTTTGATGTATTAAATGAATATACTTCTTTCTTGTA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18016 all species →	SAM_3	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF08416 all species →	PTB	Phosphotyrosine-binding domain	Domain	Interproscan
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR041418 all species →	Domain	SAM domain	Interproscan
IPR039801 all species →	Family	Epidermal growth factor receptor kinase substrate 8-like	Interproscan
IPR013625 all species →	Domain	Tensin/EPS8 phosphotyrosine-binding domain	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR035462 all species →	Domain	Eps8, SH3 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12287 all species →	EPIDERMAL GROWTH FACTOR RECEPTOR KINASE SUBSTRATE EPS8-RELATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007266 all species →	Biological Process	Rho protein signal transduction	Interproscan
GO:0035023 all species →	Biological Process	regulation of Rho protein signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX45303.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.