Gene detail

Detailed information of RMX45331.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2844:228298...251863
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00000740

ATGGCAGATCCTTCTTTAGTCGATTCAAATGAAGTCCAGTCCTCAGTTACGAATGGGGAAAGCTCGATTGAAGTGGAGAAAGAGTCCGCTGCGGAAGACGCGTCCGTAAGCATACCGCGAAAATCGAGCGTTCTTAAAAAAGATGGGAGACCCTCGAAGCGATCTCTCCAAAAGTCTGTGTCGTTTATTGCTCGTCCGGAGGATAAACGAATCATAAACGCCGAGGATTGTTTGACCTTCATGCAGAATGGTTCGGAGTTAATGAAAATTCGCTCGAATTCAAGACAATACCAGAGGTTCTTCTTTTTAGAGGAAGACTTAACGGGTTTACGATGGCGACCATCATCCAAGAAGCCTGAAAAAGCGAGGATCTCAATTGACACTGTAAAAGAAATTCGCTGTGGAAAAAACACTGATGTATTCCGTGAAATGGACAGGGATGATTTTCAAGAGGACTGTGCATTCTCAATTATTTACAGTGACAATTTTGAGACTCTAAATCTTGTTGCATACTCTCCAGATGAAGCCAACATTTGGGTTACTGGCCTAAGGTGTCTCCTGGACTCAGACAAAGCCAGCAGCCCTGAACAGTTTGTAATGGCAGACAATGGAGGCAAAGGAAGGCTTAATGAGAAAGAGGTTCTTTCTGTGGTCAGACAGTTGAATGAGCAAATTCCTGAAAGTGTAATAAAACAGAGATTTAAGGAAGCAGTTGCTATTAGTTCAAATTCTCAAAAGAATAGTTTATCTAGGGAGGAGTTCCTTTCATTTTACAAAGAACTCACTACAAGACCAGAGGTTTATTTTCTTATGGCGAGGTATACAAGTAATGGTGACTATCTAACAACAGATGATCTACTACTCTTCCTGGAAGCTGAACAAGGGCTCTCCAGAGTGGGAAAAGAACACTGTTTAGATATCATCAGAAGATGCGAGCCAACAGATGAAGGAAGAAGGTTAAAATGTTTAGGAATAGATGGATTCACACAATATTTACTAGAAGATTGTCATATTTTTGACACTGATCGTGCAGTAATCTGTCAAGAAATGAACCATCCACTCTCTCATTACTTTATTGCATCTTCTCATAACACGTACTTACAAGAAAATCAACTCAGTGGACCGTCAAGTGTAGAAGCTTATATCGATGCATTAAAAAAGGGCTGTAAATGTGTAGAATTGGATTGTTGGGACGGGAGTGGTGATGATCCGGTCATTTATCATGGCCACACACTTACCTCAAAAATTCTCTTCCGCGATGTTTTAGAAGCCATAAACGAAAATGCATTCATAAGATCTCCATTTCCACTTATATTATCCATAGAAAATCATTGTAGTGTGAAACAACAGCGAGTTATGGCAAAGTATTTCAAAGAGATTTTACAAGATAAACTTGATAGAATTCAACCCGGTGAAAATGAATCATACTTACCTTCTCCCGAGGCACTCAAAGAGAAAATCCTTATTAAGAACAAGAAGCTTCCGGCAGATGTGACGACCGACTCTGGTGAGGTCAGCGATGAAGGTGAAGACCAAGATGAAAATATTGAAATGAATGGCGAATGTAAACTGGAAAGACAAAATAGCAAAACAGGAAGCATTAAAAGACAGATAATGAAAGATCCCAATAAAAAACCAAAGAAGACCACGAAGCTGATCCGGGAGTTATCTGACTTAGTCACGTACTGCAAATCTGTCGCTTTTCAAGACTTTCAGTATTCTTCTGAAAATCAAAAATTCTGGGAGATGTGCTCTTTTAGTGAAAATGTAGCCAGACGCTTGGCGCAGACGTTTCCAGAAGAGTTTGTAAATTATAACAAGTCGTTTTTGAGCAGAATTTACCCTGCTGGCAAGAGACTGGACTCCAGTAATTTCAATCCTCAAGAGATGTGGGACTGTGGCTGCCAAATTGTGGCGTTGAATTACCAGACGCCAGGGCTTATGATGGACCTGAACCAAGGAAAATTTCTGGAGAACGGCGGCTGTGGATATGTCCTGAAACCTGCTGTTATGAGAGAAGAAATAGCTTATTTCAATCCAAGTACTAAAGATGTTATTCCTGGCGTTTCGCCTCAGATATTACAAATCAAGGTAATTAGCGGACAGCAGTTTCCCAAACCAAAAGGCTCAACAGCCAAGGGTGACGTGATCGACCCGTTTGTCACAATCGAAGTGTTTGGTATCCCTGCTGACATTGCACAGGACAGAACGAGAACTGTTCCTCACAATGGTTTTAATCCTGTGTTCGATGAAACTTTCGAGTTCCACATCAACCTACCTGATCTGGCGTTGGTGCGGTTTGTGGTTCAAGATGATGATTTTATCGGTGATGGATTTATCGGCCAGTACACCATACCTCTCAATTGTATCCAACCAGGCTTCCGACACGTGCGCCTTTTGTCATCGCAAGGGGAAGAACTGGAATCAGCTACCCTATTTGTTCACGTGACCATCACAAACCTCAACGACGCTGTGGCACAGAGACCAAGGAAAGCGTCTTTAAGAAAATCTAAAAAGGCGAGAGAGTATACAAGCATGAAGTCCATTGGTGTGAAAGCCGTGGATGATACGTTTAAGTTAGCAATTCAGCCCCTCAGAGACGGCACAGATCTTAGAGAAAATGTTCAGACGGCACTCGGAAACTTCAGGGAGATCTGTGGCGTGGCCCCCCGGTCTAATCTGAAACAGTGCATAAGGCTATTGGCTTCCAGACTTGAGGGGAATGCAGAATCTATTGAGCTCAAACTGGTCATGAAGGATGAGTATCCTTACTTCGAAGCTCAAGGGAGTTTGCCAGAGATGTTGAAGAAAGCGCTGGCAGCTATAGAACAGGTCGTCCAAGACTCCAAAACGTTAATCGAATCTTGTGACTCCGTTCACGAAAGAATTATCCAGTGCGAGAGAGCGGGCTTGGAGTGGCACGAAGAGCTTCATAATGCCTGTGTTAAAGAGGGAATAAAAGGGAAGCGACTGACAAAGGCGGTAGAAAGCTATTCATGGAATATTCGGGTCTTAAAGGGCCAGGCAGATTTACTTCTCAACGCAAAGAGCGAGTGTCAGGAATATCTTCGACAGATTCAAGAGGCGACGTTATCAACTGGTCTTGTCAAATCCGTTGGCTGTGACCTCTAA

Transcript

rna-pdam_00000740

CTAACCCGGTCACCCCCGCTGCACAGAACTTCGATCAAAACACAGACATTCGCGGGCAGTCGAAAAGAAGCATGAGTTTCTGCCTTGTTGGTAATTAATATGGCAGATCCTTCTTTAGTCGATTCAAATGAAGTCCAGTCCTCAGTTACGAATGGGGAAAGCTCGATTGAAGTGGAGAAAGAGTCCGCTGCGGAAGACGCGTCCGTAAGCATACCGCGAAAATCGAGCGTTCTTAAAAAAGATGGGAGACCCTCGAAGCGATCTCTCCAAAAGTCTGTGTCGTTTATTGCTCGTCCGGAGGATAAACGAATCATAAACGCCGAGGATTGTTTGACCTTCATGCAGAATGGTTCGGAGTTAATGAAAATTCGCTCGAATTCAAGACAATACCAGAGGTTCTTCTTTTTAGAGGAAGACTTAACGGGTTTACGATGGCGACCATCATCcaagaagcctgaaaaagcGAGGAtctcAATTGACACTGTAAAAGAAATTCGCTGTGGAAAAAACACTGATGTATTCCGTGAAATGGACAGGGATGATTTTCAAGAGGACTGTGCATTCTCAATTATTTACAGTGACAATTTTGAGACTCTAAATCTTGTTGCATACTCTCCAGATGAAGCCAACATTTGGGTTACTGGCCTAAGGTGTCTCCTGGACTCAGACAAAGCCAGCAGCCCTGAACAGTTTGTAATGGCAGACAATGGAGGCAAAGGAAGGCTTAATGAGAAAGAGGTTCTTTCTGTGGTCAGACAGTTGAATGAGCAAATTCCTGAAAGTGTAATAAAACAGAGATTTAAGGAAGCAGTTGCTATtagttcaaattctcaaaagaaTAGTTTATCTAGGGAGGAgttcctttcattttacaaagaaCTCACTACAAGACCAGaggtttattttcttatggCGAGgtATACAAGTAATGGTGACTATCTAACAACAGATGATCTACTACTCTTCCTGGAAGCTGAACAAGGgCTCTCCAGAGTGGGAAAAGAACACTGTTTAGATATCATCAGAAGATGCGAGCCAACAGATGAAGGAAGAAGGTTAAAATGTTTAGGAATAGATGGATTCACACAATATTTACTAGAAGATTGTCATATTTTTGACACTGATCGTGCAGTAATCTGTCAAGAAATGAACCATCCACTCTCTCATTACTTTATTGCATCTTCTCATAACAcGTACTTACAAGAAAATCAACTCAGTGGACCGTCAAGTGTAGAAGCTTATATCGATGCATTAAAAAAGGGCTGTAAATGTGTAGAATTGGATTGTTGGGACGGGAGTGGTGATGATCCGGTCATTTATCATGGCCACACACTTACCTCAAAAATTCTCTTCCGCGATGTTTTAGAAGCCATAAACGAAAATGCATTCATAAGATCTCcatttccACTTATATTATCCATAGAAAATCATTGTAGTGTGAAACAACAGCGAGTTATGGCAAAGTATTTCAAAGAGATTTTACAAGatAAACTTGATAGAATTCAACCCGGTGAAAATGAATCATACTTACCTTCTCCCGAGGcactcaaagagaaaatccTTATTAAGAACAAGAAGCTTCCGGCAGATGTGACGACCGACTCTGGTGAGGTCAGCGATGAAGGTGAAGACcaagatgaaaatattgaaatgaatGGCGAATGTAAACTGGAAAGACAAAATAGCAAAACAGGAAGCATTAAAAGACAGATAATGAAAGATCCcaataaaaaaccaaagaagacCACGAAGCTGATCCGGGAGTTATCTGACTTAGTCACGTACTGCAAATCTGTCGCTTTTCAAGACTTTCAGTATTCTTCTGAAAATCAAAAATTCTGGGAGATGTGCTCTTTTAGTGAAAATGTAGCCAGACGCTTGGCGCAGACGTTTCCAGAAGAGTTTGTAAATTATAACAAGTCGTTTTTGAGCAGAATTTACCCTGCTGGCAAGAGACTGGACTCCAGTAATTTCAATCCTCAAGAGATGTGGGACTGTGGCTGCCAAAttgTGGCGTTGAATTACCAGACGCCAGGGCTTATGATGGACCTGAACCAAGGAAAATTTCTGGAGAACGGCGGCTGTGGATATGTCCTGAAACCTGCTGTTATGAGAGAAGAAATAGCTTATTTCAATCCAAGTACTAAAGATGTTATTCCTGGCGTTTCGCCTCAGATATTACAAATCAAGGTAATTAGCGGACAGCAGTTTCCCAAACCAAAAGGCTCAACAGCCAAGGGTGACGTGATCGACCCGTTTGTCACAATCGAAGTGTTTGGTATCCCTGCTGACATTGCACAGGACAGAACGAGAACTGTTCCTCACAATGgtTTTAATCCTGTGTTCGATGAAACTTTCGAGTTCCACATCAACCTACCTGATCTGGCGTTGGTGCGGTTTGTGGTTCAAGATGATGATTTTATCGGTGATGGATTTATCGGCCAGTACACCATACCTCTCAATTGTATCCAACCAGGCTTCCGACACGTGCGCCTTTTGTCATCGCAAGGGGAAGAACTGGAATCAGCTACCCTATTTGTTCACGTGACCATCACAAACCTCAACGACGCTGTGGCACAGAGACCAAGGAAAGCGTCTTTAAGAAAATCTAAAAAGGCGAGAGAGtatACAAGCATGAAGTCCATTGGTGTGAAAGCCGTGGATGATACGTTTAAGttaGCAATTCAGCCCCTCAGAGACGGCACAGATCTTAGAGAAAATGTTCAGACGGCACTCGGAAACTTCAGGGAGATCTGTGGCGTGGCCCCCCGGTCTAATCTGAAACAGTGCATAAGGCTATTGGCTTCCAGACTTGAGGGGAATGCAGAATCTATTGAGCTCAAACTGGTCATGAAGGATGAGTATCCTTACTTCGAAGCTCAAGGGAGTTTGCCAGAGATGTTGAAGAAAGCGCTGGCAGCTATAGAACAGGTCGTCCAAGACTCCAAAACGTTAATCGAATCTTGTGACTCCGTTCACGAAAGAATTATCCAGTGCGAGAGAGCGGGCTTGGAGTGGCACGAAGAGCTTCATAATGCCTGTGTTAAAGAGGGAATAAAAGGGAAGCGACTGACAAAGGCGGTAGAAAGCTATTCATGGAATATTCGGGTCTTAAAGGGCCAGGCAGATTTACTTCTCAACGCAAAGAGCGAGTGTCAGGAATATCTTCGACAGattCAAGAGGCGACGTTATCAACTGGTCTTGTCAAATCCGTTGGCTGTGACCTCTAACCGGAtacttcatttatttgtcACATTTCGTCTCACCAGATACGCTCTTGTTGTACAAGCGTTGTAAATTCGAAAGCAGATAGTGTAGTAATGAATACAAAGGAGTGGTTCTTCGTTTCAGATGTGAACTTATTTTTTACCCTTactatattttttcacgtacTACTCCTCGTAATGGTTTTCTCTAAAATAtggttattgtttttttttaagtgccATGTTTATTCTTCGTAGTTTCAGTATAAATACTATCAGAAATACGTTTTACTTTTATCCTTACGTTAGTCATTATGCGCGCAATCAcaatcttttctcttctttcttaatttttttcgtgttttccATGGATTCACACGAACACAGATGATTTTCGAGCTTAAAACGAAGTTCACACGTCTCAGTagattaaaattgaaatacaacAGTGTTTTAATACGAAGATTGAGGAAGCGATTTTAAgtagaaaattgtaaatattaattcaagaggaatatttaaataatgcaatacagaaaaaaacaagttttttgaAGACACGTGGACGTTTAGATGGTTGGATTAATGATTTAGTTCTTGAATTAGTTTTCGTTCTAACTGTCCGGCATTAAGTCACATAGTACTAGATTTAATTTTCGTCATTGCAAATCTCGCGTCATAGTTTACCATGTGACTTGGTTAAGCTGGTGACACTGCGCGTATGTGTTTTGACAAATAGTATTCATGACATGTTTTAGCCTATCGTATTACGTGACATTTTATAAATATCGGCACCACGCAGATCTAAGACTCTTGGTGTTTTCAGATTGATTATTCCTTATGTTGAATTTTGGTACGTAGGTAACAATGTTTATGCGATCCGGCCTCAGCGGATTTATCCTggaaaaagtatatttttagCTTAACGTTTTTCGAGTGCGAGAAATAGTAGAGTGAAACGGCAAGTGCGTTACGATCccagatttaaaaaaaacaacaacaacggagcaaaaataatgtaaaatttatgTTGTTGAGatgatcattattattagtatCACTATTGTCACTCATCTAGATTGCTTATTACGTTCTTCAACGCTACAGGGAGCGGGGCGTGAACCTGGAAACGAGAGTGCGCAGCCGGCGCTTGGTAACGACACGAGTAACACGCACGCGAGGGCTCAGACTTTTACGCGCGCGCGCGTGACAATTGAATCGAGAGAGCAAATTTTGAAGTTCAAAGGTCTTCTAATGGGCAAGACTGTTGATGGTTGTTTTTTgccaatcattttttaattaactgaatTAGTGATCGTAAGTGAAGGCCTGTGAGTGAAACATCGCATCTGAACAAAGAAGTCTTCCTAAGCAGATTCGTTCACGGTCGTGTCTCAAAGTATGTCCCAGCTATGGTTTAtgcttgtttatttatttgacattGTACATATCAGAGATGAGTGACGCATATCTGTAAGTAGTTAAAATCGTGATAGAGCTAACTCGAGGTTGTCAGATCGACTGGGAAAAAagtattcatttaaaaaatattaatttatgaaatagtCATTTATAGGAGAAGACTCTTGTTTGCTACGCAATGAATGTGTGTTAGAGAATCTGGAACAGAAGTCGTGTTAAGAGAATAAACTACGAGAACTTCATTTCAAATGCAATCACAGAATTATCATGATTAAAGAAGAACTTTTTAGATTTAAGTTAATAGGTGACGGAAATTGTACCTACCGGCAGTGAAGCACACTTCGAATTCATGGATATTGTctattaatcataaaaattacaatttcctcgattgtgattggtttaaaaactcttatttCCTTCTGACTCACTTTCCAAGTTGTTATCAGAGTTTGTTATTGgacagttcaataagccaatcactTTCATAGTATTAATTTaactcaaccaatcacaaccttGGTTTTAATATGATTACTTGGTAATAAGACTTCGTATCGTCCAATAACCTTTACTCCTCAAAAGATGGTACATAGATTCAACACAACCAAGAATTTGGAATATTAACCTCATGCACGATTCtgtagaaaaatataaaatttttaaatattttaaattcatttttaaatttcaatcaaaatgaTTATGCTTCAACTCGTGAGAGTAACTTGCAtctaatctctccttacaatattaccccCAGTCACACATAAGGTAAcgagagtaaaaaaatat

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16457 all species →	PH_12	Pleckstrin homology domain	Domain	Interproscan
PF00388 all species →	PI-PLC-X	Phosphatidylinositol-specific phospholipase C, X domain	Family	Interproscan
PF09279 all species →	EF-hand_like	Phosphoinositide-specific phospholipase C, efhand-like	Domain	Interproscan
PF00168 all species →	C2	C2 domain	Domain	Interproscan
PF00387 all species →	PI-PLC-Y	Phosphatidylinositol-specific phospholipase C, Y domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR000909 all species →	Domain	Phosphatidylinositol-specific phospholipase C, X domain	Interproscan
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR017946 all species →	Homologous_superfamily	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily	Interproscan
IPR015359 all species →	Domain	Phosphoinositide-specific phospholipase C, EF-hand-like domain	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR001711 all species →	Domain	Phospholipase C, phosphatidylinositol-specific, Y domain	Interproscan
IPR001192 all species →	Family	Phosphoinositide phospholipase C family	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10336 all species →	PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006629 all species →	Biological Process	lipid metabolic process	Interproscan
GO:0008081 all species →	Molecular Function	phosphoric diester hydrolase activity	Interproscan
GO:0004435 all species →	Molecular Function	phosphatidylinositol phospholipase C activity	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0048015 all species →	Biological Process	phosphatidylinositol-mediated signaling	Interproscan
GO:0051209 all species →	Biological Process	release of sequestered calcium ion into cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15370	PLCL2; inactive phospholipase C-like protein 2	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.