Gene detail

Detailed information of RMX45349.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2844:672400...694588
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00000791

ATGAAAGGAGGAACTACCACTGTACCAACATCACAAAGCAAACACACAGATGGCTTGAATACCAAAAAGCCAACTGCAGAACAGATCAGATATGCCCAGCTTCTAAGCACAGAAGATTCTAAAGTGGTGAGAGATAAGATCAAACAGGTGTCAGATGTGACAGGATGCAGTTTTGATGTCGTGAGCATTGCACTGCATGATTGTAATTTTGATACAGAAGCCACAATTAATGCTTTGTTAGAGGGAAGCCAAGATCAGAGTGAATGGGTCATGAGAAAAAACAAAAAGAAGAAAAGTCAAACTCCTGTCTCACAAGGCATAGATACAATCATCCCTACATCACAGACAACAACACCAACGACTACAGCTCCAGTGTCTACTAAACCTGCCACGCAACGACCACCAAGAGGCAAAGGCAGAAACAGACAGAGTGGAGAGCAAAACAACAGTTCAGATAAGGATAATAAGAGTGAAGGAGCAATTCATAACAATAATAGACATCATGGAGAAAGTGGACGTGGAAGGGGCTCAAGGGAAGACAGATGGAATGATCGAAAACCAGGTGGCAGAGGTGGCCCGCCAAGGAGGGGTGGAAGAGGTGGTGGACGGCCTGGGAGATCATTCCAATCCCGTGGGCGAGATAGATCCAACAGATATGGTGGAGGAAACAGGAATGCATCTAATTCAACCGCAGCAAATGGGCCAACAGTGAATGGTACAGAAATGTGGGGTGAAAATGAAGATCATCTTTCAAAAGAGAAAGACACAGAACAAGCTGAAGAAGTCTCACCTCTGACAACTGAAGAGTGGGAGGTTGAAGAATGGAATCCAGTTGAACAGACAACAACATCAAACACAAATGATACATTGTTCAACAATACTTCTTCCTCTCACTCATGGCCAGCAAATGCAGATAGCTCTGTAGTCTCATGGGATGTGGACAGGCCTACAGTTCCTAGCTCAACAGGGCCAACGGTGCCAACCTCAGACAGCAGACAGAAGGCTCCAGAGAGCACTGCTCCATTTACTCCCGAGAGCGTGGACATGGCCATAATACATTCAAAGCTGGCTACAAATCAACCCACAGGCAAAGATCAGTTCTCAGCGGTGGACTTTTCAATGCCTCGTATTCCTCTGCCTGGTGAGTTTCGTAACTTGCACAATAGCCATGACACTATCAGTAAGCTTCTGGACAAGGTTGTTCTGTCTTCCTCTGTTGGAGTGGTGCCTCAGAGTTCCTCAACAACAATTCAAGCTCAGCCACAGAGGCAGCCCCGCACAAGCAGACCAAAGAAGTCACAGAAAAGCCAGATTCCATTGCAAGCTGTTGAGATGCCAGGGACAATGGTTGACAATCTTGATGTGCAGTTTGGAAATTTAGAGTTTGGTGGTGATTCTGTTAGCAGCCCACGAAAAAAAGAGGAGTTCCCTGCAAGTTTGCCCATAGTTGGAGACACAAAGTCTGATGAACAAAGCTCAAGCAGTAGCAGTGAGTCATCAAGTCCACCTTTGGAACCTCAGCGTACTGTGACAAGTCTGCCGTCTGCTTCCATCACCAAACCTATCACAATAGCGACTTCAGCCTCAGCTTCATCAAGTGTGACAACACTAGAGGAGAGTTCACCTCGACATTTTCAGCACCCATCTCCTCGAAGTCAACAACAGGCACTTGTGTCTCAAGTAACCAAGCAAATCACACCAGAGCCAATTCCACTACCTCCACAGCTTGACTCAAGAGATAGTGTCATTTCAAGCAAACCGCCTCTTTCAGATGATCAACAGAAATCTTCCCCCAGTCTGCAATCCTCTGCCATTCCATCCCCTTCCCTCAGTGGGGCCAATCTGACTCAAACAGGCTCCTCATCTCCATTGAGACCAGGGTTGTCTTCATCAATACAGAAAGATATCACCCTTGAGACAAGACCATACCAGAAACATCATGTTACTCAACCAACAGTGCCATCAACTAAAGATAAGCTTGGAACTAGTTCACTGACTAGCTCTGCTGTGTCAACTGCAGTGCAGCGGAATGATCTGTCCTCTGTAGAGCCACTCCAACCCCCTCCTGGGGTGCCTGTGCCCCCATCAGTGAACCAGTCAACAGCTTCTACATCATCAGGGTTCACTACAGTTACCATGTCAGGCACAGGCAAACCAGTGTCTCATACCACTAAGCCATCATTACCTCCTGGAGTTTTGCCATTAAACACTCTTTATGGAATGCAGCAAGGCCTTATTCATGCTTATCCCCTTCCATATGGTTACGAAGATCTTCAAAGACTACAAATGTCACAATACTATGACATGCCTGCTTTCCAAGCAGCTGGTAGGGATGGCCTGTCAACAACATTTCATGGAGATCAAAAGTTTGGGCGGACTGATACATCCTCTCCAGTTCCTTCATCCCTGAACCAAGCTGTGACCCTTCCTCAACCTCATCTTCAGCAGCAGGCCTTTATAAATGCAACAACTATGCCACATCCTTATGGTTATGGTGGACTAGCATTCTACCCAGGGGCTGGAATGATGGCAGGGGGCTTCCCTGCTTACACTGCTCCTATGTATCAGATGCCAACAAAAACTCATGGGAATGCATCTCAGTATCAGTCTGGTTACACCTCAGGATATGATGATTTAGGTCAGACACATGACTTTGGGAAGTCTGGTTACCACACTTCAGTTTCACCATCACAGAGTAAATCTAATTCAGGTCCAGCTGTAAGTAGTGCTTCAGATCTCTCAGGAGCTTCTTACAAACCCCAAGTTGGAAAGTTCAATGACAACAAACCATTTATGGGTGGTACACCTCCACCACCAGCGTTAAATCTGTCCATGACAGGACAGCATGGTCCTTTGGGAAGCTATCCACATACAGGACACCCATTCATGTCAATGATGACCCCTGTACAGCAACACCACCCACCATCCCACTACCACCACCATATGCCTCATCATATGGAAACAGGCCAGCCTGGATCATCTCAGAGAGGGTCTCAAGGACAGGGGCCTAAACAAGGGCAGAATAAGGGTCATCAGGGTGGCTACCAAGGATCAGGGACTGTGGCATTCTACTCTGTTGTTTCCAGTAGAAGTAGCTTGATTCTGTCTGCAAGTAGAAGATCACATGTTGGGCTGCTGTCGAAAAGACTTCAGCTCGACCAAAGAAGGATTCCCCTGACAAGAGCGTTCAGTACCGAAAGCACCCTAGATGAGTTATCTTACCACAGTATCGCAGATGAGACACTGGATGCCATAGCTGAGTTATTTGATGACCTTGGTGAAAGCCCATCAAGCCCTGCTGACTATGATGTCCAGATGAGTGATGGAGTCCTAACAGTCAACTTGGGAGCTGGACGTGGTACCTATGTGATCAACAAACAAAGCCCTAACAAACAAATATGGTTGTCCTCTCCAACAAGTGGTCCCAAGAGGTACGATTTCAAAGATGGTTCCTGGATATATACACATGATGGTGTTTATCTTCATGATCTTTTATCATCAGAGATTTCTGCGGCACTTGGACATGAAGTGGACTTTACTTCACTAACATATGGTGGAGCAGATGGAAAGCTTAGTTGA

Transcript

rna-pdam_00000791

TTCACCAAACGCATGTATTGTGTCCTGCATGTCTGGTGCAGCGGCAAAAGTCTTCGGTTCTAATTTCCAGCCAAACTATTTGAACGTTGTACATACCTTGTATATACTGTACAGTTAGGGAActagaaaaatgaaaggagGAACTACCACTGTACCAACATCACAAAGCAAACACACAGATGGCTTGAATACCAAAAAGccAACTGCAGAACAGATCAGATATGCCCAGCTTCTAAGCACAGAAGATTCTAAAGTGGTGAGAGATAAGATCAAACAGgTGTCAGATGTGACAGGATGCAGTTTTGATGTCGTGAGCATTGCACTGCATGATTGTAATTTTGATACAGAAGCCACAATTAATGCTTTGTTAGAGGGAAGCCAAGATCAGAGTGAATGggtcatgagaaaaaacaaaaagaagaaaagtcaAACTCCTGTCTCACAAGGCATAGATACAATCATCCCTACATCACAGACAACAACACCAACGACTACAGCTCCAGTGTCTACTAAACCTGCCACGCAACGACCACCAAGAGGCAAAGGCAGAAACAGACAGAGTGGAGAGCAAAACAACAGTTCAGATAAGGATAATAAGAGTGAAGGAGCAATTCATAACAATAATAGACATCATGGAGAAAGTGGACGTGGAAGGGGCTCAAGGGAAGACAGATGGAATGATCGAAAACCAGGTGGCAGAGGTGGCCCGCCAAGGAGGGGTGGAAGAGGTGGTGGACGGCCTGGGAGATCATTCCAATCCCGTGGGCGAGATAGATCCAACAGATATGGTGGAGGAAACAGGAATGCATCTAATTCAACCGCAGCAAATGGGCCAACAGTGAATGGTACAGAAATGTGGGGTGAAAATGAAGATCatctttcaaaagagaaagacaCAGAACAAGCTGAAGAAGTCTCACCTCTGACAACTGAAGAGTGGGAGGTTGAAGAATGGAATCCAGTTGAACAGACAACAACATCAAACACAAATGATACATTGTTCAACAATACTTCTTCCTCTCACTCATGGCCAGCAAATGCAGATAGCTCTGTAGTCTCATGGGATGTGGACAGGCCTACAGTTCCTAGCTCAACAGGGCCAACGGTGCCAACCTCAGACAGCAGACAGAAGGCTCCAGAGAGCACTGCTCCATTTACTCCCGAGAGCGTGGACATGGCCATAATACATTCAAAGCTGGCTACAAATCAACCCACAGGCAAAGATCAGTTCTCAGCGGTGGACTTTTCAATGCCTCGTATTCCTCTGCCTGGTGAGTTTCGTAACTTGCACAATAGCCATGACACTATCAGTAAGCTTCTGGACAAGGTTGTTCTGTCTTCCTCTGTTGGAGTGGTGCCTCAGAGTTCCTCAACAACAATTCAAGCTCAGCCACAGAGGCAGCCCCGCACAAGCAGACCAAAGAAGTCACAGAAAAGCCAGaTTCCATTGCAAGCTGTTGAGATGCCAGGGACAATGGTTGACAATCTTGATGTGCAGtttggAAATTTAGAGTTTGGTGGTGATTCTGTTAGCAGCCCACGAAAAAAAGAGGAGTTCCCTGCAAGTTTGCCCATAGTTGGAGACACAAAGTCTGATGAACAAAGCTCAAGCAGTAGCAGTGAGTCATCAAGTCCACCTTTGGAACCTCAGCGTACTGTGACAAGTCTGCCGTCTGCTTCCATCACCAAACCTATCACAATAGCGACTTCAGCCTCAGCTTCATCAAGTGTGACAACACTAGAGGAGAGTTCACCTCGACATTTTCAGCACCCATCTCCTCGAAGTCAACAACAGGCACTTGTGTCTCAAGTAACCAAGCAAATCACACCAGAGCCAATTCCACTACCTCCACAGCTTGACTCAAGAGATAGTGTCATTTCAAGCAAACCGCCTCTTTCAGATGATCAACAGAAATCTTCCCCCAGTCTGCAATCCTCTGCCATTCCATCCCCTTCCCTCAGTGGGGCCAATCTGACTCAAACAGGCTCCTCATCTCCATTGAGACCAGGGTTGTCTTCATCAATACAGAAAGATATCACCCTTGAGACAAGACCATACCAGaaaCATCATGTTACTCAACCAACAGTGCCATCAACTAAAGATAAGCTTGGAACTAGTTCACTGACTAGCTCTGCTGTGTCAACTGCAGTGCAGCGGAATGATCTGTCCTCTGTAGAGCCACTCCAACCCCCTCCTGGGGTGCCTGTGCCCCCATCAGTGAACCAGTCAACAGCTTCTACATCATCAGGGTTCACTACAGTTACCATGTCAGGCACAGGCAAACCAGTGTCTCATACCACTAAGCCATCATTACCTCCTGGAGTTTTGCCATTAAACACTCTTTATGGAATGCAGCAAGGCCTTATTCATGCTTATCCCCTTCCATATGGTTACGAAGAtcttcaaagactacaaatgTCACAATACTATGACATGCCTGCTTTCCAAGCAGCTGGTAGGGATGGCCTGTCAACAACATTTCATGgagATCAAAAGTTTGGGCGGACTGATACATCCTCTCCAGTTCCTTCATCCCTGAACCAAGCTGTGACCCTTCCTCAACCTCATCTTCAGCAGCAGGCCTTTATAAATGCAACAACTATGCCACATCCTTATGGTTATGGTGGACTAGCATTCTACCCAGGGGCTGGAATGATGGCAGGGGGCTTCCCTGCTTACACTGCTCCTATGTATCAGATGCCAACAAAAACTCATGGGAATGCATCTCAGTATCAGTCTGGTTACACCTCAGGATATGATGATTTAGGTCAGACACATGACTTTGGGAAGTCTGGTTACCACACTTCAGTTTCACCATCACAGAGTAAATCTAATTCAGGTCCAGCTGTAAGTAGTGCTTCAGATCTCTCAGGAGCTTCTTACAAACCCCAAGTTGGAAAgttcaatgaCAACAAACCATTTATGGGTGGTACACCTCCACCACCAGCGTTAAATCTGTCCATGACAGGACAGCATGGTCCTTTGGGAAGCTATCCACATACAGGACACCCATTCATGTCAATGATGACCCCTGTACAGCAACACCACCCACCATCCCACTACCACCACCATATGCCTCATCATATGGAAACAGGCCAGCCTGGATCATCTCAGAGAGGGTCTCAAGGACAGGGGCCTAAACAAGGGCAGAATAAGGGTCATCAGGGTGGCTACCAAGGATCAGGGACTGTGGCATTCTACTCTGTTGTTTCCAGTAGAAGTAGCTTGATTCTGTCTGCAAGTAGAAGATCACATGTTGGGCTGCTGTCGAAAAGACTTCAGCTCGACCAAAGAAGGATTCCCCTGACAAGAGCGTTCAGTACCGAAAGCACCCTAGATGAGTTATCTTACCACAGTATCGCAGATGAGACACTGGATGCCATAGCTGAGTTATTTGATGACCTTGGTGAAAGCCCATCAAGCCCTGCTGACTATGATGTCCAGATGAGTgATGGAGTCCTAACAGTCAACTTGGgagCTGGACGTGGTACCTATGTGATCAACAAACAAAGCCCTAACAAACAAATATGGTTGTCCTCTCCAACAAGTGGTCCCAAGAGGTACGATTTCAAAGATGGTTCCTGGATATATACACATGATGGTGTTTATCTTCATGATCTTTTATCATCAGAGATTTCTGCGGCACTTGGACATGAAGTGGACTTTACTTCACTAACATATGGTGGAGCAGATGGAAAGCTTAGttgataaaggaaattaacCAATAAAAAGCTAGGCATTCATTTTCACAAGTTAGCTCACAATAATTACTACATAAAGACCATTACAGCTTGGAAATCATCTTTATTTATGGCAATGTTAAAAACTTCTAAATTATCCAAAGCCTGTTATCTAATATTAACAcagaatgtttgaaaaatgtgcTGAGGAGTAGTACTCAACAATAAGTTTCAACtcaattattttgaacttaAGAGCCAAGATTGTAAAAGACTCTACTGGTAGTAAGGGTAATCAgataatttttccacaaaaatgtCAACAGAGAAAGTGCTTATGTGCAAATCGAATTTGCCTTTATCATAAAAAGTGATGgtattttcttacaaaaataacttgtaTTGAGCTTAGATTCATTTATTACTCAAGTCCTGGAGACTATTCCTTGCAAtagttttgtcattttcttttttctttttaagaatgtAATCTTTATacttaagttgtttttaattttgaaatttcatctcTGCATTTGATGATATTAACTAAGACACAGTGTTTGATGTCTCTTGTATCATGAACACTGTGTATGGTTCTAATTAGAACAAATGCTAAACAGTGCAGAGTCAATGTGACCATGCTTTTCATTGTCAAATGGTTGGTATCCCTGTAGTCTTGCTATTCTGAGAGGTTCAAAGAGTGGAGAAGGGAATGAGTCCCAGTCATACCAACCCCAACCTTCACACTTGTCTGGTTCCAGGTTCTCTGGTTCTTTTGCCTGGCTGTTatcaatttctcctttcatgaaaattgttaTGTAATGGTAATCCTCTTCAGGAACAACTGCATTAACTACAGTTCCAAATGAAACATTCTTAATCTTCAGTCCAGTTTCCTCTAATGTTTCTCTTGCTGCACATTCAGACCATTCTTCACCAAATTCCAAATGTCCCCCAGGTAACCCATACTTCCCACTTCCTGATGAGCCTTTTCTCTGTCCAACTATGACACAGTTAGGGTGATCAGATGAGATTATAAACACGCCAACACCGACACCGACTTTCCGTCGAGCGCTTTTGTCCGCCATCTTTGAAGTTGGCGCGAAATAAGAGTTGTAAGAGATCTGGGAACTGCTTAGAAACGCGCCTGCAAGATTTTGTATTTGAGACACAAAGATGGACGACTACGAGATGATAATTTTGCAATGATTTAGGAGAAGTAGTAAGCAAAAATGCCGATACAGGTGAAGGACTACGTTTGGGAGGAAACAGATGAAACGGTTTTGATTACTGTTCCTTTGAAAGGAGTGCCGTCAAATCGAgtggatattttttcaattgatgaTTATATCAAGGCTAGCTATCCTCCGTATATCTTTGAAGTCTTCCTGTTCGGTGAAGTCGAAGATACTAAGAGTAAGGCAACATTTGGCAGTGGAGTTGTCAAGTTTCAATTATTAAAGAAGAGCTCATCCAAATGGAATCAGTTACATGCATCAGAATCAGAGGACAAAGAATTCATGAGAAAGAAACGAGAGGAAGCTGTTGGTAAGGCGCACGAGagagctgaaaaagaaaagcaaagaaaagcagCTGAGAAAcgagaacaagaaaaattggcACTTCAAGAACAGATGAAGCTGGAACAGGAAGAAAGAGCTAGAATAGATGCCATAAAGGAGGAAGAACGTAAAAAGGCAACTAAGGCCATTGaaagatggaaagaaaatcaaaaattgcaGCCTACAAGcatagaagaagaaaaagtcaCTTCGAACAGTAATGTAAATCAATATGAAGACACCAACATGTCTGCAACAAAAGCTGACCTAGAGGTGGGAGAGTATCAAGAGCCACTTCTAAAACCAGCTACAAAGAAAATGGCTCCTTACAACAAAGAAAGGACAAATGaaaaaaagaaagacttcCTTGAAAAGGCAGTTCCAGAGCCAAGGGTATCTGGCTCCATTTCAGTGTCATTCACTCCTCgtgttttcaaaacagctgCAAGAGAATCCAAAGCaccagaagaagaagagTGGCTGAAAAAGATGGCTGGTGCAAGCCGAAAAACAGATACTACCAACACTGATGCTGTTGATATGGAAGAAATGAACCCAGTGTGGTTAAAAGACAAAGGAATTGGGTTTTACAAGGCTGGAAACTTTGTAGCGGCTATCAATGCATTCACAGCAGCCATCGTACTGGATGACTCAATACCATCGTTATACTCTAACCGTGCTGCATGTCATCTTCAATTGAAACAGTACAAAGAGTGCATTCAAGACTGTACAAGTTCACTAGAACTCCTTGTTCCTCCGGTTCCGGCCAATTGTGCTTCCAGATGTAAAGCGCATGTCAGACGAGGGACCGCGTACATGCAATTACAAGAATACGTGCTGGctctTCAAGACTATGAATCAGCCCTCAAGCTTGACCCTAAAAACGTAGACCTGAAGAACGACTCAGAGAGAATAAGAAAGATCATTCAAGGCTCCACATAGCTTCAGAATAAATTATGTCATcgaatgatgatgaaaaagtcGCACTTTCTGTAAGAGTCTGATGCTTTCGGTCTGAGGAATAGACCACTTTGATGAGCGAATGAACCTTAGACCTGAAATTCAACAATGGACAGCGATTTGTACGTTAAATTATTTGTACAGGGTTAAACTGCTCTATGACTTAGCTGAAGCATACGCaatgttgaaaaaatcaatgaaaaatttgaatttaaagtatCTCAGCAACCATTGATGTTTaggaaaaggtgaaaattCCACCGACAGATCACCTCACCGTTCGCTTTATCCCGAGATCAAGACTcgagaaatcaaagaaataaaaatatgtgatTCTCTTTACTGTACCAGTGAGCTTTCTTCCCCTCAATAGAatgtcaattttaaaaaagaaaactgtccATTCAAACTCTGAAAACTGTGACAGTATTTTTACTCTTAATAAAGAGGACAAGAcgtg

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01491 all species →	Frataxin_Cyay	Frataxin-like domain	Domain	Interproscan
PF12478 all species →	UBAP2-Lig	UBAP2/protein lingerer	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036524 all species →	Homologous_superfamily	Frataxin/CyaY superfamily	Interproscan
IPR051833 all species →	Family	Transcription-coupled DNA damage response regulator	Interproscan
IPR002908 all species →	Family	Frataxin/CyaY	Interproscan
IPR017789 all species →	Family	Frataxin	Interproscan
IPR022166 all species →	Family	UBAP2/protein lingerer	Interproscan
IPR020895 all species →	Conserved_site	Frataxin conserved site	Interproscan
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16308 all species →	UBIQUITIN ASSOCIATED PROTEIN 2-LIKE/LINGERER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008199 all species →	Molecular Function	ferric iron binding	Interproscan
GO:0016226 all species →	Biological Process	iron-sulfur cluster assembly	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0004322 all species →	Molecular Function	ferroxidase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006879 all species →	Biological Process	intracellular iron ion homeostasis	Interproscan
GO:0018283 all species →	Biological Process	iron incorporation into metallo-sulfur cluster	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX45349.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.