Gene detail

Detailed information of RMX45416.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2838:84848...88145
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00015707

ATGTCGCTGAGGAAACGAACACTTCGCCTTTGCCCCAGGGCATATTTCGAAGAAACTTACGATTGGAGGACTTTGAGTGACATGGAAATTGCGACCGCCTCGTTTTTCATTCGTTTcacttttcttgtatttctaCTGCTTTTAGTGCAGTTTAGGCTCTCACTGTCGTGCAGCGGCTCCACAAATGCGCTGGACAAAAGAGGCCCGAGAAAAGCTTTAATGCTGGAACAGAACGTGCCAGATACTCAAGAAAACAGTCAACAAGCAAGTGGACCATCAAAAGGAAAGATAACAAGAAACTCTCCTGAGTTTGATAAACTTAAACCCTGCTACAACAACGCCATAATATTCAAAGACGAAGAAGGAACCGGGGCAGATCGCTTGATGTCGAAGaGATGCCAAGACAAATTGAACACGCTGGCGGATCTTGTAAGACGACAATGGCCCACTGTAAAGCTCGTCGTTACAGAAGCATGGGATGAACAGGGACAGCATTCGGAAAATTCGCTGCATTACGAAGGAAGAGCAGTCGACCTACGTTTGTCCGACAAGGACAGGACTAAAATCGGTTATCTAGGGCGACTAGCTGTTGACGCTGGTTTTGACTGGGTTTACTACCAGAAAAGGACTCACATTCACGCTTCAGTCCGCGAAGATGGCTACAAAGACGAAGCTTGGGGAGGATGTTTCAGCTCTGACTCAGTCGTTAAACTGGAAAATGGCGCTGATTTGCGGGTCCGAAATCTGCAAATAGGTGACATTGTACAGGTTATGACAGAGGAAGGAAAATTGGGTTACAGTGAAATTGTAATGTTCGCAGATTTTAAACCCGACATACCTCGTGCTTCGCACGTTTTAATCGAGACCGAAAATCCCGCCAAACGAATTACACTTACACCCTCGCACCTTATTTTCACCACGAGCAATTCCTCAGAGAGTCGgctcaaatcaaaacaagccGGAAAAGTGTTACCTGGCGAGTTTCTGCAAGTTTCATCACAAGGCAAGCTTGTCCCATCGTTGGTGAGAAGAGTGTCTGTTGTCAAACGAACTGGCATGGTCGCACCAGTAACCATGCAAGGTAATGTCATTGTGGATGGTGTTCTGTGTTCATGCTATGCCATGATAGCCGATCACGATATTGCGCACATGGTTTTCAGTCCTCTGAGACTTGTACATAGTTTTGCGTCGAATCTCTGGAGAATGGACATGTCAATTCAACAAGGAATGCATTGGTATCCAGGACtgctgatgaaaataaatgctttATTGGGCATTTATGAGCTCTCGTGAATGCAATACGCTGGATGTcgaattaaaattacaaaagaggagagagagaattttttatctttcctcAATCGTGGCTGCCCTGCTACAACCTTTTTGACTTTCGCATAACtgttctttgcaaaaaaaaaattatgcgtttaaaaaattttacttgattgCCACTTCTATCGGAATTAATATTGATGAAAGGCATTACTGTGTGATTGACTGACCAGGTTGTGCAGTTAGTATTTATTCATAGGTTGTCTTTACAGGACACAGATTTgcattatatatattttttgcaatatttaggataaaaacaatgtttgcTATCATAAATCTAGTGCTTGTTCACGTTTAGCGAGATAGCAAACTTTGTtctccaatatttttttttatgataaccAATGAGCTTTTTCAGCGCTAATAGTGTAGTTTAGCGCAAAAAACGTAGGGCAACTCCGgagataaattaaattaaattacctATTTATGTCTCTATATTGTACATTGTAGTTTTGTATGACATTGTATAAACGGCAGGTATCCGTGTACATTCAGAACTTTTGGCTAAAGAATGaactaaaaatattaaaaaaattatcatacaAATTATTGCGTATTAGAGCAGAAATGTGATTTGTTTTACGATGAAACGAGCTATGTAATGCgaagtgaaaatttctttgtaccTAATGTAATGCACTTTTGTATAGTTGTAACAAACTGCAGTTGGAAGACTATAAAAGTCAACTATAAAAACTGATGTAAAAAAAGTCTAGAAGTAAGTAAGTTAACCTATAAGTTTAACCAAGAAACACATTTAAAGAGGGTTATATATCTAGACGAGGTAATCATAGTCTGAATACATCTTAGTGTGTCAAGAGGATTCTGGTAATTCTCTTAACATGTCTTAAAGTGTTAAGCTTTATCATTTATAGCCTTTTAATGGCATTAGTGTACTTAGTGAAAAATGACCCGCATATAGCAAAATCCACtttaaaagagattttatTTGAAGGCAAGGTTTTCCTACTTGCTCTTAAGCTCAGATTGACGCATCTGTGGGACATTTCCTTGTGTACGAAGGAATCTTACCTCGTTTTGTAGGTCAAATTCTTTTGAAGCTCAGTTCACgaaagtttgttttatcagTCGCCTGGTAAAGGCCTTCTTAAGTCTCTCTTGATACAAACAAATGTATTGGTGACTTTCAAAACAGATTTTCAGCTTTGAGTTGTGAAAAGAGTGTTACTTAGAAAAAACTTGAAGTGCAAAACTTTAAGCATGATTTCGGAGCAATATTAAAGTATGTTCCAAcgtaaata

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001288 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01085 all species →	HH_signal	Hedgehog amino-terminal signalling domain	Domain	Interproscan
PF01079 all species →	Hint	Hint module	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009045 all species →	Homologous_superfamily	Hedgehog signalling/DD-peptidase zinc-binding domain superfamily	Interproscan
IPR036844 all species →	Homologous_superfamily	Hint domain superfamily	Interproscan
IPR050387 all species →	Family	Hedgehog Signaling	Interproscan
IPR006141 all species →	PTM	Intein N-terminal splicing region	Interproscan
IPR003587 all species →	Domain	Hint domain N-terminal	Interproscan
IPR003586 all species →	Domain	Hint domain C-terminal	Interproscan
IPR001657 all species →	Family	Hedgehog protein	Interproscan
IPR000320 all species →	Domain	Hedgehog, N-terminal signalling domain	Interproscan
IPR001767 all species →	Domain	Hedgehog protein, Hint domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11889 all species →	HEDGEHOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001708 all species →	Biological Process	cell fate specification	Interproscan
GO:0005113 all species →	Molecular Function	patched binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0007224 all species →	Biological Process	smoothened signaling pathway	Interproscan
GO:0010468 all species →	Biological Process	regulation of gene expression	Interproscan
GO:0016539 all species →	Biological Process	intein-mediated protein splicing	Interproscan
GO:0007267 all species →	Biological Process	cell-cell signaling	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan
GO:0016540 all species →	Biological Process	protein autoprocessing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX45416.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.