Gene detail

Detailed information of RMX45566.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2823:110867...122779
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00013105

CTTGCCCCAGGCCGGATGAAACACTTTCAGGACCTGGTTACCAAGCTGACCCGGGCACGTTTGGCGCGGAAAGGGATGATCAGAAACAACAATAGAAGTTACattgaaatttagttttgggattttttcaattcttttacGATGTCATCCATTACTAATGGACTAGGGACATCGGTAAAAAAAGCTGTGGGCCCTAAAGCCAAAGTGACAGTTGTTTTGGGCGCACAGTGGGGCgatgaaggaaaaggaaagttgGTTGACATCTTAGCTACAGATGCCGATCTTGTTTGCCGGTGTCAGGGTGGAAACAATGCTGGTCATACAGTTGTGGTTGActcaaaagaatatttttttcatatggtTCCAAGTGGGTTGATTCAACCAAAGGCTGTTAGCATTATTgGAAATGGTGTTGTTATGCACATTCCACAGTTCTTTGAAGAGTTGAAAGAACTTGAAGCTAAAGGGGTTACTGATTGGGAGAAAAGACTTCTTGTCTCTGACAGAGCTCATATAGtATTTGACTTGCACCAAGAATCTGACAAATTACGTGAAGGTGGAAAGGGAGGGTTGGGGACCACAAAGAAGGGAATTGGTCCAACATATGCCTCAAAGGCACAAAGGATAGGCCTCAGAATATGTGACTTAGTTGGAGACTTTGAGGCTTTTGAGAGAAGATTCAGAGGACTGGTGTCACATTTTCAGAGGCTATATCCAGGTCTTAGTACAAACATTGAGGAAGAGATAACAAAGTACAAGCACTATGCAGAAAAGATCCGTCCTTTGGTGTGTGACACAGTAAGCTACATGAACAACGCACTTCAGAATGAATCAGCCAAAATTGTTGTGGAGGGAGCCAATGCACTCATGCTGGATATTGACTTTGgtaCATATCCATTTGTTACATCTTCTAACTGTGCTGTGGGTGCAGTTTGCACAGGTCTTGGCATTCCACCTGCAGCAATTGGCAATGTGCATGGAGTTACCAAAGCTTACACAACAAGGGTTGGTCTTGGAGGATTCCCAACAGAGCTTAAAAATGAACTTGGAGAGAAGATGCAGCAGATAGGAAGGGAATTTGGTGTAACAACAGGCAGAAAGCGTCGCTGTGGATGGCTTGATCTTGTAATGATCAAATATTCACACATGATCAACAATTTTACAAGTCTTGTGATTGCCAAGCTTGATGTTTTGGACACTTTTGAGGAGGTGAAAATTGGGATTGCATACAAGTACAGAGGACAATTCATGAAATCTTTCCCTGCTTGTGTGGAAGTCTTGGATGAAGTTGAAGTGGAGTACATTACCCTACCTGGTTGGATGACCAGTATTGAACAATGTAGAACATTTGATGCGTTACCAGCTAATGCACAAGCATATATTaggaaaattgaacaaattacACAAATTCCAGTTCAATGGGTTGGAGTTGGGAAATCCAGAGATGCCATGGTATCTCTGTTTTAGAGATATGAAGAGGCTTACGAAAACCATCTTGTATTGTGTTTGTGAATGCAATTTTGTTCCCAttaactgttttattattgatgTGCTGTTTAATTGTAATGTAAACGAATACGCAAAATATGAGTGTTGAAATTTTACAGGTATTTCAAtggtaaaaagaaacaaacagagcAAGAAGTTTCTGTCAAGTGACGTTGTTGATAGGATTCCACGCTTTGCCTGATGAACACTACGCTGACCGCACAATATGACACAAGTTACTTCAGATATTCTTACATTGTattatttgtaataattttgcaaagaaGAAGCTTTTAAACTAGTACATTTCTGGTAACTGAAGGTGATATTAATCACGAAATAATGAAATGGCCcagctgattaaaaaaaaaagcctcttATACAAATGAAACACCAGGGGGATGTGTGGATTTGTggatgtatttatttaaaagccgtgaaaaaaaattgttctgtcCGATtacaattaataattttctagcagattatgagaatttagtattcTGTATGTATTCTAATGTAACTTTAACGTAACTAGTCTGCAAGTTTCTAGAAATATCTGTTATAAATGCGAGTGATAAACAATTTGTTGTTCCATGTATCTTAAAGTTTCGTCCCCCAGCATCCGGATTGTGACGCAGCTTTCAGTAAAATTACCAAACCTCCCAACCCATAACTCTTCTTGTCTACCTCAAGACACAGGATGAGAGTGATAAAGCACAACCCAAcgcaggaaagaaaaagtctaTCAACATACATCTAATATTACAGCGTCCTATTGTGGAATATGTttgctgaaacaaaaaaaagttcgtTCCGTAGTGGAAAGAAGTGTAAAATCACCCTGCATGCCTGCAAACAAAATAGAGTTATTTTTATGGTAGAATTTCGTGTTGGATGTACCAGCCTCGGTGAAAACGTAACTTCTTCGTTTGCCATGTGAGTGAATAACTTCAAGACCTCAAGTAAGGTTCCcccttttcggcgaagtctCAGGAAAGGCGCATTAGTCGGTTTAGTTCCAACTGTTTCAGTGAAATGTTCGCTACCGTAGATCTCCGTAGGGCCCACGAGACGTGTTCACCTCGAAACCTAACGATGAGTCTCAACGTCTATCCGTTTGGCACAGTCAGCCCACCTCTAAACGGGTAAGGTAAACTGTGAGGTCGGGAGTTACGCGGGGACAACTTCCCTTCCTTCCACCTTTTCAAGATCTTTACCGTAACGCTCTGAAAATCCTACGAATGCACAGCCCCAGGCTATACTCCAGAACCAGCCAATCATGAGGAAGACAATTGTTGCCAGCTGCATGAAGCCTACAAAACAATTGACGAACAGAATGGAAGTGCGGCTGATCAGCGGTATGTTCTTCCGTGTCAGGAAGAAGGCGATCAGGCCAGATATGACTGTCCCTGTACAGAAAATGCACAGTCAAGTCAGAACATTCCATCATTGAGAAAACAGCCACTCACTTCTCAAATctcaaagtttttgtttgcagtTTGTGTCAGTTGTTTCCATATTTGTGGATCAGTGTTTGTCCACCctggcaaaatattttttcgagGCTTCTTGAATTTAACACCACATCGTATACTAAGcatcatttttaaagtaaccTTTATCAACAAAGCACTTTTAACGAGTGGTTGTTCGGAGAAATGACCGCCCCTGTTTTCGTTGGAAATGTAATTCTAAGCAATACTATACCAGACTGTCTATTGTCCTTTCCCTGCTCTAGCTTCTTACTGACTGTTCACACAAATTACAGTTAACAACAGACTTATGATTAGTGagtattcattttcaatataatACAAGCTAGGTAAAGTATACTTTCACACGCATTTCATTTACCGGCGGTAAAACCGCGTGTCGCACGAATTCTATCAAGCTAAGATTTTACCAAAACACGTAGTAAAAGGAAGACAgaccaaattgaaaaaatttaaagatgaGGTCCCATAACAACTGGATTGAAATGTTTCCTCCAATGTTATTCATAATGGGAAAGGAAATGGTTAGAAAAAGGAGGCGATACtgccaaaaaattaatgttacatcctgaagtttttttttattcaggggAGACGGATGAGAAGAAAAGAGTTTGAACAGAAATTATTGTAGAAATGCGTTAATATGCTATAGTTGACATTTAACACATCCATCGGTTTACTGTGTCATAGTTTTCCTAAGAATCGCAATGTTGATAGGACTAATAGTATCTGTCAAACTATTTTGTTCAGAGTAGTGTTGTTAACCGAGCTTGAAAACACTAATGATTCGTTACTTTGCtgacaattttgttgtcttgttCCTTAAATCAAATGCCCGACTTTATCGATTCCACTTTGATTAACCGCCACATCGTCTCTTTGTTCTGACATTACCACACTATAGTGATTATTTCTTCGTGGTGAGTTCATAATCGCACGCGCCCTCTGGCCATCCAATATGAAGTGACAAGAAGGCGAGAAACTCTGCAAATGACAGCCCAcggtaaaaagaaatttgttttcttcaattatCTCTTCGTCAAAGACAATAAGTAATCAGGCCTTTCGGATTAGCACTTGAGGATTAGTACAAATgaattgtaaaataatcaCGAAATTCATCACGGACAGTATTTTTACGCATAAATGTTTGAGCATTTTGTAATTGATAATAGGCAAGAAATAGAAGAACAGTTTGAGGAAGCGTTTCTACGGTTGGTCTTCGTTGTATCTAGTATTCAACGGAAACGATTTTTCCAATCTTAATCTTAACAGGCTGCTCGGAAAAATGATTCTCGAGATATGATACACAAATCGCATGTTGATAACGATGAGTTAATGGGCAAATAACGAATTCTACAGAGTCAtgtgtcataaaaaaaactgttatggtaataaacatttttccaatAATTGGTTTCTCTTccgtttttctctttttttgtatacTTTTGCTATTTGCTATGTTTTAcgttatgaaaattaaaatgcttttgGGAAATTTCCGTTTAACTAAATCTATTCccagatttttgtttttgcttttctttttatgttttcctaCTTTGCACGCAATTCGAAGACTTCGTCGTGCTGGGCTCCTCAGAAACATATTATAGCATCATATACATCATAGCGAGGGCCGAAGTGAGAGaataataactttttgatGTATCATGAAAATGACTCGGGAAAAGACTTCGCTTtctattttctgtttgaaagaCCGTGTGATATCCTTGTGGCTTAAGTCTTGTGGCTAAGACTTCCTTTAAAAACATAATTGCGTCAGCTTAAAAGAGTGTAAGATTAAATGGAAAGAATAAATTCTCGATCGTCCGATAGTTAAAAATACATCTTAATGGTCAAACTAttggaaaatgttaattataaaGCGAAATACCATCAGAAGTTTCTTGCTTCAAAACCCAGCCGTGAATAAATGTTTAATCAGTCCAAAACTATGGAGCTGATCTTACCTGATCCGGGGATGAGAATGTTaaaaatgagacaaacaatGGCGACGGGACGCGGTAATACTGGAATGGCATCCTTCGCTGAGATTGTCTGTTTTCGCTTCACTACTGTTGCCGGGTCTTCCTTTGGGATTATTGTTTCATTAGGAATTTGAAATCCAGGAAATGGAGTGTACAAGCCAGCTGTTGCGGAAGATGAACTCGACACTCTTGCCGAACGTGGTGTAACTCGAGAACTTTCAAGACTGAAACTTCGTTGATAGTTGCCATTTTCTAAGGGTTTCACTTGAGGTAGACCCGCACTCAAGTCGCTCGCAGCTTGAGAATTATTCTCACCAGTAAGAACTGGTGCATTTAATCCCAAAGCTGGCAAATTTTCCTTAGTATTTCGGCCCTGACTTTCGTTGTCCCCGTCAGTGACTAAAAATTGTGTTGAACTGCTCCCGCGCTGTTTGTGGGCAAGAGACATCTTCCGGTAATCAACGATTATTCCTCAGCAATGGATGTCTCCTCCATTATGTTTCACCGCAGttacataaattttgaagttatGAATTTCCCAAGATTCTCTGTCAGCTTCTAGCGATTCGTTACTGAACTCGAGAGAGAACTGAGCGAAAGCAGAAAGCTGCGAGATGTTGTTATGGATTAAAACTTTGACATCACAATAGACTCAACCTGAAGATCAATTTACATTCCACATCTATCAACGCCTAATTGTCCTTAGCTCGTCAAAGCCCTGAAGGCATTTATATATGAGTACCATATGTCTGATCGATGCTTTAAAGGTTTTCAGCTCTAATCACGCGCAATAAAACAGAGCGTCGTGTTCTTATCGGCAATGAGGTACAATATTGCGTTAAACACTTTTGTATTGGATCTTTTGTTCGTTAATGCATTGCTAGCTGTAGCGAGAGcgaaacacaaattttttgaAGTGCAGAATAAAACAGGTATCTCAGTTTCCAGCCTGTTTGCACATGTTTCATGTTGTTTGTATTGGATCCAATTTTGCTTGCAACCTATTGAAAATATGTCTTCGAGTTTTATATCCATCTTAAGAGAGACTTGGAACATAGCAGatattcttttcaattctATAAAATAAGGAGATTAGCGGTTAAGAACAATTTAGTACATTTgcattgaaaaggaaataaataaaccgCTCGAGAATTAATGTTGTCATCCACAATACAGACTTGTGTATTTTTGGTTCATTTACACGCTTGCAAATGACTTCGGATATATTCTTAACATTCGGGGAACATTTTTGTATATTCCAATTCTAATTTCTC

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00709 all species →	Adenylsucc_synt	Adenylosuccinate synthetase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042111 all species →	Homologous_superfamily	Adenylosuccinate synthetase, domain 3	Interproscan
IPR001114 all species →	Family	Adenylosuccinate synthetase	Interproscan
IPR018220 all species →	Binding_site	Adenylosuccinate synthase, GTP-binding site	Interproscan
IPR042109 all species →	Homologous_superfamily	Adenylosuccinate synthetase, domain 1	Interproscan
IPR042110 all species →	Homologous_superfamily	Adenylosuccinate synthetase, domain 2	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR033128 all species →	Active_site	Adenylosuccinate synthase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11846 all species →	ADENYLOSUCCINATE SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004019 all species →	Molecular Function	adenylosuccinate synthase activity	Interproscan
GO:0006164 all species →	Biological Process	purine nucleotide biosynthetic process	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0044208 all species →	Biological Process	'de novo' AMP biosynthetic process	Interproscan
GO:0046040 all species →	Biological Process	IMP metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01939	purA, ADSS; adenylosuccinate synthase	EC:6.3.4.4	Alanine, aspartate and glutamate metabolism	ko00250	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.