Gene detail

Detailed information of RMX45802.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2790:759...33352
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00023937

TCGCGAAGCAGTATTGGCAGTATTTTAATAcatgatttattattttatcatccACTCACAATAGATTTCTCCCCGCAGGAGATAAGGAAGGCTTTAGGTTGGCCTCTAGCAAAATATTGAGATTGAATATGAAGTGATAAACGTTAATTTAGCTATGGTTGTGCACCCCTTTGCCTTTTGTCCCTTTTGTACACTGGGAAACTCATCACGATTTAAATTGATCATTTGATGCCATTTGCACTCTTAAGGTTTATCTTTTGTATTTTCGAGGGAAACAGTACTGCTGACACACACTTCTTTGTCAATACTTGGAAACCGGAATTTCAGCAAATTCGTAAACATCGGTCGATTGTTATGTAGATAACTTCGCTTGACgttattcagtttttcaaacttcCTGTACCGCCCACAACTTCTACATGTATATTAGCCCGGTGGATGGAGTTTGGGTAATTGTAATGAAAGTCTGTCGTCACAGCGGCATAGGGATGTATTATGCCTGAAGTTTTGGAAGGCTTCCGCCTTGTAAGCTCGAAAGCCAAATCTTTGTCAAACAGCAATGGTCCTTGTCATAGTGCATCGTTGTATAACTCCTAAGGTCTTCGTTTTGTTGATCATAGCTGTGGAATGGACAGTATTTAGTGTCGAGGCCAAGAGGATACGGCGCAACGCGGAAAGTCACCCTAAGCTTATCCAACTTAATTGTGTGACTGGGGAGTCAGCACGATTGACATATAAATCAAAGGTCCTTGACTTTGACAGTGCTTCGAAGAGGTCACATTGGGAGAAAGACACTCAAAAACTGATCTCAAAAATAGACAAGATATCTTTTGGATTCAACAAGAATAAGAGCAAGTTTTGGTTAAAGATCAAGAATGTGGATGACAGTGATTCAGGGAGATATTCATTTGTAGTAAATGGTACAGTTCTTAGGCTATGGCAGCTGCGCATCCAAGaTTCTCCTCCGGATTCCTGTGGAGGGCCTCTTGATGCCAACGTCACATCTTGTGTGCCATTCAGTACGCAGTCCCATCCAAATTGCCCATCATTCCCAGGAAAGCCCTTGAATGTTCTAGGCTCTTGTCATCTTTATAATGGAATGCCCGTCATTCAAGTTACCTGGACAGCACCTAATACAGGTTTTGGTGATTTATGGGGCTATCAGCTGTATATTTCTGGAAAAGACAAACACCCTGGTCACAATGACTGTACACAGATGAACAGAAAGgaatattGGTATTGGactttttctaaaaacatCCGATATGGAGCAACATACCAGATCACAGTACAGAGTATGCCATCACATCATGAGAATGACAACAATCTAGTACACCTGAGTGTGAAAGTACCagACTGTTTTATAAACGTCACAGCAAAGTACACTGACCAGAAAATTGTTCTAGAATGGGCTTTACCTTTGAAAGAACAATGTCAGAGTATCACAACATTCCAAATTGAATGGAACAACATTCAAAAACCTCAAGAGTGTAATGGGAAAGCAGAGGTCAAGGAAGGCTATGGATATAtcattcaactgaaaaaagacatttgCATGAGGTTTAACTACTCCATTAAGTTAAGGGGCAAGATCAACCAGACATACACAAAATATGTAAGAACGACTGTGTTAATCCCACTGCCCACAGCACCACCACAAGTTATACCTGGAGGGCAATCAGATTCTACTAAAAAACTCTTGATAGCTGTTGTGGGTGCTTTCCTTggactttttatttgttccttACTGGTCATGtacagaatatttttttggcaagTACGTATCAGACTTCCAGATCACCCTCTACCAAGGCCTCATCTAAATGATCCTTTGCTTGAGTCAGACAAGAAACGAGTTTTTATCATGTACACCAGATGCTGCGAGAAGTGTAATCATGTAGTTCATTGTTTTGGTGCTGTGTTGAATTCTACGGAGCTGATAGAGGCTAGTATAGATATGTGGAATACCTTGGATATAGCACCCAATGTTCCTCGCTGGTATGAAGACCAAGTGAAGAATTCGCATTGTGTGGTGGTTCTTGCCTCGCACAAAATGTCAGTCAGATGTCACAGCAGTTTGGAAGAAGGAGATGATCcCTTGAACATCAGATGCCAATTAAATCTCATACGAGGACAGATTTCTCAGAATCCTGATGTTCACAGATTCATTCCCGCGTTCTTTACCTATAGTGgaacgaagaaaaatattccagAATTCCTTTCTTCTCGCTGGAGTCACAAGCTACCAAAGGAAGTGGACCGTATTATCTTTCACCTGCTCAATGTCGAGAAAATACAACCGTATCGCACACAGCCCATTATTGTGATGGGCGGCAATGGTCATccatttgatgaaaagaagaaagaattgGAAAGAGCTGTGCAGGAAGCTGAAGCCTTTCACAGGAATAACAACTTACAAAATGTGTAACTCAcacaactttttcttgtttgtggTGTGACAGAGCCAGTTTTTCCCATCTCAAATTAACATGTCCTGCTTATCACTTATGGTTGAAGCCCCTGATACTGCTAttacaaagtttcttttgaggTTGATACAATCATTGAATTGTCCAAGAATGTTCTTTTTTCGATAAGGTGGGAGATTCTATTTTAACCTtaatttgataagttttaatAATGAATGAGCAAGTAATGAGTTATTCAGGAGTGACGAGATTTGATGGTTTTCTGCCATCCTCATTCATTTAGGGGTAATGGAAGTgttcttaaataaataagagaTACATATACAAATAGATTTGCTCTTAAGCGTAACGCTATATGCTACTGTTAGCAAATAAAAGGAGAGAGCGACACGATTTATCTATAAGTTGAAAGTAAAGTATTTCTTTGGTTGAACTAAGGTTAAAGAAGTGTTCagcagtttatttttgcttatttGTAGACActcaaatatatatacatatgcATGTTTCAATTTCTCCATAATACAGTGTTCGGTACGTAGAAGTAGAGCACGCTATATATTGAGATTGGGAAATAAAAGAGACTATTTTGGATGAAAGTACAGGGatgaaaatattctctttGTATATAgtctatatttttttgttaaatacatATATCAACCAAGGCATGGTACCATGCTTTTATTCATATATGTATAATTTGCACAACAGAGAATAGGCTTCTGTTTTCAATGCTTTATTCAAGACCCAACATGTTTTGGCATTTTCCTTCCTCAGGGGTCTCAACATGTTTGTTATATACATATGTACTAtgcatatatacatatacatgtgCTACATATATANNNNNNNNNNTATATATGTATAACGTATATATACTATGTATATATAATATGCAGATATATATCTATGCACACCGATAGATGCATGTGTTTACAAAGAAGCAAAAGTAAACTGCTAACAGTGCAAACACTCCTTGTTTAACAAAATCTctatatatacacatatatatacatatacatatatatatattgtatatGTATGATGTATTTCTAATGTTGCAACGTTTTTTAAAGCGAGTGTATGTGTATTctacaaatcaaacaaaagcagaaaacTTAGAGTCAATATCCAagaataaagttttcaaaattgaaaatttccccAACCCATGACTGATTAGTCAAATTCCTACCCTCCTCACCCCCCTGAGCTTTCCACACTGGGCCATTTGCAACCCACCCTTGGATAAGTTGGTGTCTGGGCTGCATGTGGGCACTAGCCTTGACGTTAGGCCCGCTGCATTTTCATCGGTTAGGCTGGCTTGAGCACGGGTGACGTCGGCCTTTGAAATGGGTATCCATATATACAGGATAATTTGGGTCTATCacctgagttgatgatgtaaatggGCCACTGTTaggagtttctaaagctgaattttcgaGTGTTTATAGAGGAAGCTTCTGTCAGATAACTTGGTTTTCAGGGAGGTCCTCACTAACtcagataaaataaaaacatttaaaactggTTATAGTCAGTCCCAGAAAGACTTAAATGACAAAACTCAGCTAAAGGAACTATAATGGTAATGTTGTATACAAGTAATAATGACAAATGCACGAACAGTGAAACACAACTTCGTTTGTTTATGCCTTCTAGTTGAACATGCGCATATC

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08357 all species →	SEFIR	SEFIR domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039465 all species →	Family	Interleukin-17 receptor-like	Interproscan
IPR038683 all species →	Homologous_superfamily	Interleukin-17 receptor A/B, FnIII-like domain 1 superfamily	Interproscan
IPR013568 all species →	Domain	SEFIR domain	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15583 all species →	INTERLEUKIN-17 RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030368 all species →	Molecular Function	interleukin-17 receptor activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX45802.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.