Gene detail

Detailed information of RMX46047.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2745:266741...269203
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00002010

ATGCAAGAAAACTCTCCTTACTCCCAGCATTTTCATGCTGCAAAGAGCTGTCTTCGTCGTGAACAGTACGGCGATGCCTTGGCACATTTAGTATTTCTGGCTAATGTGGAACCGTCATTCAAAGAAACGTTGGAAGAAGAATTCGTCCTCGCTTTACGAAATTGGTTAGAAATACTCGAGTCTCATGGCGAGCTGGATAAAATGATGATTTGTCTTCAGGAAGCATTGAAGCTGTATCCTCAAAGTGAGATCGTTCTCATTAACACAGGAGCAAACTTGATCAAGTTGGGTTTCACTGACGAGGTTGCTTCGTGTTTTAGAAGGGCATTACATGTAAATCCAACAAGCATTAGAGCGAAAGAAAATCTTGAAAATGTTGCAAATCTTTTGGTTGAGAGGTGGCATTTTAGAATGTTAAATGACAAGAAAAGAAATTCAGCCTACAAACGAGCCATTTCCAAGGCAATAGGCCAAGGCCATGACATTGTCTTGGATATTGGAAGTGGTACTGGTATTCTAAGTATGTTTGCTGTTCAAAGCGGATCAAAAGAGGTGTATGCCTGCGAAATGTCCAAGACCATGTTCGAATTGGGCCACGATGTACTGAGGGCTAATAACATGGAAAAGTTGATTCACACCATACATAAAAAATCAACTGAGATGACAGTAGGTAAGGATATCCCAAAGCAGGTTTCTTTGGTGGTGACAGAGACACTTGACTGTGGTCTCCTTGGAGAAGGAATTCTCACCACTGTAGAACATGCATGGTCTAACTTGCTAATTCACCCACCAGAGAACTCAGACTCTAATGTAAAACCCATTTCTAAGGTCATTCCTGGTGGTGCTGTTCTTTATGCTATGGTAATTATGTGCGATGACATCAGAAATCAAACAAGGTGTAAACCATCAATGAGTGGATTAAAAATGTTTCCCAAGTGTAGCATAGGAGGAGAGGTAATGGAACGAAAGGTAGAAATACCATCTGTGAGTGTCAGTGCATTTGATCAGCTTGAACCCTACAATACAGAGAGTTTGAACCAGTTAAGAGGTGGATTTACATCTCTCACATGCCCCTTTAAAGTGACAGAGTATGATTTTAACAATCCTAGTAGCTTGAACAAGGACAGGGACTTGAAGTTTGAAATCACTGCAACCCACTGTGGTCAAGCTGATGCAGTTGCAGTCTGGTTTGATTTGCTACTAGATGAAGATATAACTCTTTCAACTGGCCCCAAAGATGATTCCCTGTGCTGGGAGCAGGCAGTTTTCCCCATTTATGCAAATGATGCTGATTCATCTTGTAAATTTGCAGTTTCAAAGGGAGACATGCTTTCTCTCCATGGAGAGCTTTCCAAAGATTGTCTGAAGTTCAATTTTTGTGGAATTAACTCAACAAAACTAGTTTTTGAATCTAAAGTTAGTGCTGTACCATCACAAAGGGAGAGTCAAGCTGCAATAATAATGAATCCCTCAACCAAGAGTGACCATGAAGAGGTTGTGGCAATCATTCCACCATCATACATGCGGCGTCTGAATGACACTCCCTTCAATAACCTCTATGATGAAGTCATCTCAGGAGCTGTTAACTCCTTGAAACTGAAACAGCATTTATGCAGTGGCAATGAAAATCCATGTAAAGATGGTGTATGTAATGTTCTTGACATCACTTATGGCCCTGCTTTGTTTTCTCATTTTGCTGCAAGAGGGAAGGCAGACCACGTCTTGATATTAAATCCTCACAACACAGATTGGATAGAACATATTTCACATGGAAATGATTTGCCAAAAGTTATTGAGAAAGGCTCAGAAAAGCTTGAAGAAATTGCTAAAGAGGGAAGAATTTGGAATTTACTTGTCAGTGACATTGTAGAGCCATCAGGCATCATTCGTCAGCAAGTTATTGAAGACATTGTCTTTTCAAGAGGATGTCTGCTCAGACCACAAAATTTTCAAACTATTCCTATGGGATTCACTGTGTACTGCATGTGCATTGAATCTTCTTTCCTGTTTGCCAATTGTCGTGTACTTGACCAGGACAGAACACTTGGGCTTGAGATTGGCCAGTTTCTGAATGATTTTCAAGTAACCACTCAGATAGATATTGACCTTACAACTCTTCCTTTCTCAAGCATCACCAACCATATTGAACTTTTTAGCATAAATTTCATGGAGCAGTTTGATGAGGAAAATAAGGTACTTTCTTTACTTGAAACTCACTCTGAGAAAAAAGTAAAAGTTTCCAAGTCAGGGAGGATTCAAGCCATTCCCTACTGGTTTGCTCTGCACATTGGCAATCAACACTCACTTTCAACATATAGTGGAGATTATGCTGAATCACATTGGAGGCAAGCGGCTATTGTTTTGAAAGAGGAAGTAGCTGTGGAAGTTGGACAAGAAATTCTAATTTCAGCATCTTGTGTAAATAGTAGCATTACTCTTGATGTGAATGTTATCAAAGATTGA

Transcript

rna-pdam_00002010

ATGCAAGAAAACTCTCCTTACTCCCAGCATTTTCATGCTGCAAAGAGCTGTCTTCGTCGTGAACAGTACGGCGATGCCTTGGCACATTTAGTATTTCTGGCTAATGTGGAACCGTCATTCAAAGAAACGTTGGAAGAAGAATTCGTCCTCGCTTTACGAAATTGGTTAGAAATACTCGAGTCTCATGGCGAGCTGGATAAAATGATGATTTGTCTTCAGGAAGCATTGAAGCTGTATCCTCAAAGTGAGATCGTTCTCATTAACACAGGAGCAAACTTGATCAAGTTGGGTTTCACTGACGAGGTTGCTTCGTGTTTTAGAAGGGCATTACATGTAAATCCAACAAGCATTAGAgcgaaagaaaatcttgaaaatgttgCAAATCTTTTGGTTGAGAGGTGGCATTTTAGAATGttaaatgacaagaaaagaaattcagccTACAAACGAGCCATTTCCAAGGCAATAGGCCAAGGCCATGACATTGTCTTGGATATTGGAAGTGGTACTGGTATTCTAAGTATGTTTGCTGTTCAAAGCGGATCAAAAGAGGTGTATGCCTGCGAAATGTCCAAGACCATGTTCGAATTGGGCCACGATGTACTGAGGGCTAATAACATGGAAAAGTTGATTCACACCATACATAAAAAATCAACTGAGATGACAGTAGGTAAGGATATCCCAAAGCAGGTTTCTTTGGTGGTGACAGAGACACTTGACTGTGGTCTCCTTGGAGAAGGAATTCTCACCACTGTAGAACATGCATGGTCTAACTTGCTAATTCACCCACCAGAGAACTCAGACTCTAATGTAAAACCCATTTCTAAGGTCATTCCTGGTGGTGCTGTTCTTTATGCTATGGTAATTATGTGCGATGACATCAGAAATCAAACAAGGTGTAAACCATCAATGAGtggattaaaaatgtttcccaAGTGTAGCATAGGAGGAGAGGTAATGGAACGAAAGGTAGAAATACCATCTGTGAGTGTCAGTGCATTTGATCAGCTTGAACCCTACAATACAGAGAGTTTGAACCAGTTAAGAGGTGGATTTACATCTCTCACATGCCCCTTTAAAGTGACAGAGTATGATTTTAACAATCCTAGTAGCTTGAACAAGGACAGGGACTTGAAGTTTGAAATCACTGCAACCCACTGTGGTCAAGCTGATGCAGTTGCAGTCTGGTTTGATTTGCTACTAGATGAAGATATAACTCTTTCAACTGGCCCCAAAGATGATTCCCTGTGCTGGGAGCAGGCAGTTTTCCCCATTTATGCAAATGATGCTGATTCATCTTGTAAATTTGCAGTTTCAAAGGGAGACATGCTTTCTCTCCATGGAGAGCTTTCCAAAGATTGTCTgaagttcaatttttgtgGAATTAACTCAACAAAACTAGTTTTTGAATCTAAAGTTAGTGCTGTACCATCACAAAGGGAGAGTCAAGCTGCAATAATAATGAATCCCTCAACCAAGAGTGACCATGAAGAGGTTGTGGCAATCATTCCACCATCATACATGCGGCGTCTGAATGACACTCCCTTCAATAACCTCTATGATGAAGTCATCTCAGGAGCTGTTAACTCCTTGAAACTGAAACAGCATTTATGCAGTGGCAATGAAAATCCATGTAAAGATGGTGTATGTAATGTTCTTGACATCACTTATGGCCctgctttgttttctcattttgcTGCAAGAGGGAAGGCAGACCACGTCTTGATATTAAATCCTCACAACACAGATTGGATAGAACATATTTCACATGGAAATGATTTGCCAAAAGTTATTGAGAAAGGCTCAGAAAAGCTTgaagaaattgctaaagagggaagaatttggaatttaCTTGTCAGTGACATTGTAGAGCCATCAGGCATCATTCGTCAGCAAGTTATTGAAGACATTGTCTTTTCAAGAGGATGTCTGCTCAGaccacaaaattttcaaactattCCTATGGGATTCACTGTGTACTGCATGTGCATTGAATCTTCTTTCCTGTTTGCCAATTGTCGTGTACTTGACCAGGACAGAACACTTGGGCTTGAGATTGGCCAGTTTCTGAATGATTTTCAAGTAACCACTCAGATAGATATTGACCTTACAACTCTTCCTTTCTCAAGCATCACCAACCATATTGAACTTTTTAGCATAAATTTCATGGAGCAGTTTGATGAGGAAAATAAGGTACTTTCTTTACTTGAAACTCACTctgagaaaaaagtaaaagtttcCAAGTCAGGGAGGATTCAAGCCATTCCCTACTGGTTTGCTCTGCACATTGGCAATCAACACTCACTTTCAACATATAGTGGAGATTATGCTGAATCACATTGGAGGCAAGCGgctattgttttgaaagaggAAGTAGCTGTGGAAGTTGGACAAGAAATTCTAATTTCAGCATCTTGTGTAAATAGTAGCATTACTCTTGATGTGAATGTTATCAAAGATTGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06325 all species →	PrmA	Ribosomal protein L11 methyltransferase (PrmA)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR025799 all species →	Family	Protein arginine N-methyltransferase	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11006 all species →	PROTEIN ARGININE N-METHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016274 all species →	Molecular Function	protein-arginine N-methyltransferase activity	Interproscan
GO:0018216 all species →	Biological Process	peptidyl-arginine methylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19737	PRMT9; type II protein arginine methyltransferase	EC:2.1.1.320	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.