Gene detail

Detailed information of RMX46064.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2745:21395...29458
NR annotation: no NCBI-NR hit recorded
Species abbreviation PDAMI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00001993

ATGGCCACCATGTTCAAGAAACACTCCAAAAGAAATTTTCGGAAAAAAATCGACCACGAAGACGACGAAACTGGCGATGATCGGGAAATAGAGAACATTCCTGTGATTTCAAAACCCGCGGTCAAAAATTCTAAACCAAAACAGAAAGACGAGTCAAAGATCAAGACCGCGTCGTCTAATTCATTGCTCAGCTTCGATGATGAAGGAGGAGACGAGGGTGAAGTTTTCAAGATTCGCAAGTCAAAAGAAAGCCGTCGGTTGGCGAAGAAACTGGAACAGGAGAGGAAAAAGAAAGAGGAATTTGACAAAGTGGGAGTTGTGAAGAAAAATGATCTAAATACTGATCAGGGCGAAGATGATACCGACGAAAGATTGGCTGCACTGAGAGCTGAGCTGTGTCAAATTGCAGGCGATGATGACGGGGAGGAAGCTGAAGATGACACTGATTCAGTAGCATCAGGACCTATCAAGAAAGAGCCAGCTATAATTTCAAGAAGTAAAACTGATTTTGGCATACCAGATGCAGCAACAATTCATGCAGCACGCAAACGGCGAGAAATGGCAAGACAAACTGAGCAAGACTTTATCCCTTTGGATGACACACAGAAATATGAGGGAAATTTTGCATCCACAGGCCGGCTAGTGAGAGAAGATGAGAATGATGTAAGTGATGATGAGGGGGAAGAGGGACCAATTTCGTTTTCTGTTCCAAAGAAAAGAGGATTTCCTGCATTGGATCGTCGTCGTGAGGTTGAAGCTGCTCTTGCTAATCAAGAACTTGAAGAGAATTCTGACAATGAAGAAGCTGAGGATGATGAAGAGATCAAACTCTGGGAAAATGAACAAATTCGCAAAGGTGTTAAAGGGGTATCAGGACCTGTGGTCCAACCAGAGTTACTACAAACAACTGAGGCAACAAGCTCATTGTATCAACAACAATTCACTGAAGAGAACTCGTTGAGTTATCAAACTGTACAGCAGCCTTACACATATGGATTTGGATATAATGATACACACACAAATGGAAATCAAACTTATGGACCTGCATTTACAACTAATTCACTGCAAAGTCGACATGCTGTTACTGTAGATATGATCTGTGACAAGATGAAACAGCAGCTGGGGACTCTTCAAGAGGTACATCGTCAACATAGAATGGACAATGAGAAAGCTTCATCTCAGCTGGAAACTGCTCAGAGTAACATCAAGAAGTTAGAGCGACAGGGAAGGAATGCAGAGCAGAGATTTAGTTTTTTCCAAGAGATGAGGGGGTATGTCAGGGACTTGATAGAATGCCTTAATAACAAGGTACCTGCAATTGATGAGCTAGAAACGTCTATGCATGCTTTGTTGAAGAATCGAGCTTGCTTAGTGGTCCAGAGGAGGCAAACAGATGTCAATGATCAAGCAGAGGATTTTCTTAATGCTCAAGCTGGACGCCAAAACTCAGCTAAAGCAGCAGATCAGGGGAAGTTGAGACGTACTGCAGAACGAGAGGGAAGAAGAGCACGGAGAAGAAAACACAGAGAAAAGGAGAAGGGCAAACCTTCCGTACCAGACACTCATCATGAAGGACAATCAACAGATGATGAAGAAACTGAGGCAGATGCTGTCAAGTTTAGGGCAGAAACAAATGTTGTGGAAGATTTTAGTTCCATTGACTCCATAAAATCAAGATTTGAAGAATGGAAGAACAAACACGAAGACTGTTATAAGAATGCATACATTTCACTTTGTCTTCCTAAACTGTTTGCTCCATTTATTAGACTGCAACTTTTGGACTGGAACCCATTTGAGGTGAAATGTTTAGAGATTGAAGAATTTCGTTGGTACAAAAGTCTTGTATTGTTTGGATGTGGAGATGATCCTTATGATATTGATGCCGATGACCTTGATGTCAAACTTATCCCAATGGTGCTAGAAAAGGCTCTCATTCCAAAACTAACTGGTCTTTTTGAACATGTTTGGGATCCTCTTTCGCAGAAGCAAACAATGCTGGCCATTAAGTTAATAAGGGGAATGGCTGAAGTTTACCCAAACTTTCATGCTCAGGATAAATCAACACAATCACTGTTTGCTGCAATAACCAACCGCTTAAGACGATGTGTAAGCGATGATGTTTATGTTCCTCTCTACCCCAAAAGTTTATTGGACAATAAATCTTCTGGGGCTTTGGCATTTTTGCAGAGACAATTTTGGAGTTGTGTAAAGCTCATGGGAAATATCTTGAGGTGGGAAGGCCTTCTTTCCTCCGCCAGACTGCAGGAACTGGCAATAGATGGTTTGTTGAACAGATACCTTCTATTAGCACTACAACACTCTCATCTTTACTATGACAGCCTGGAGAAAATCACAGCCACGTTCCCTAAACAGTGGTTTAACGAGCAGCAGCAGACAACAGTACCTTCGTTAGAAGCGCTGGCACGTTTCCTTGCAACTTTAGCACTCAATATACAGCGGTCTTGTGCCGGGTGCCCTGAGGCCGAGAAAAAGAAAGCAAGAAGCGGCATCAAGAAAGTTATACAAATTCTCCTTCAGTTAAGATCCGTGGACAAAGCAAAGATGGTAGCGGCAGAGCACAACATGGATGACGTTGTCAAAGATGTCTGA

Transcript

rna-pdam_00001993

ATGGCCACCATGTTCAAGAAACActccaaaagaaattttcgGAAAAAAATCGACCACGAAGACGACGAAACTGGCGATGATCGGGAAATAGAGAACATTCCTGTGATTTCAAAACCCGCGGTCAAAAATTctaaaccaaaacagaaagacGAGTCAAAGATCAAGACCGCGTCGTCTAATTCATTGCTCAGCTTCGATGATGAAGGAGGAGACGAGGGTGAAGTTTTCAAGATTCGCAAGTCAAAAGAAAGCCGTCGGTTGGCGAAGAAACTGGAACaggagaggaaaaagaaagaggaattTGACAAAGTGGGagttgtgaagaaaaatgatcTAAATACTGATCAGGGCGAAGATGATACCGACGAAAGATTGGCTGCACTGAGAGCTGAGCTGTGTCAAATTGCAGGCGATGATGACGGGGAGGAAGCTGAAGATGACACTGATTCAGTAGCATCAGGACCTATCAAGAAAGAGCCAGCTATAATTTCAAGAAGTAAAACTGATTTTGGCATACCAGATGCAGCAACAATTCATGCAGCACGCAAACGGCGAGAAATGGCAAGACAAACTGAGCAAGACTTTATCCCTTTGGATGACACACAGAAATATGAGGGAAATTTTGCATCCACAGGCCGGCTAGTGAGAGAAGATGAGAATGATGTAAGTGATGATGAGGGGGAAGAGGGACCAATTTCGTTTTCTGTTCCAAAGAAAAGAGGATTTCCTGCATTGGATCGTCGTCGTGAGGTTGAAGCTGCTCTTGCTAATCAAGAACTTGAAGAGAATTCTGACAATGAAGAAGCTGAGGATGATGAAGAGATCAAACTCTgggaaaatgaacaaattcgCAAAGGTGTTAAAGGGGTATCAGGACCTGTGGTCCAACCAGAGTTACTACAAACAACTGAGGCAACAAGCTCATTGTATCAACAACAATTCACTGAAGAGAACTCGTTGAGTTATCAAACTGTACAGCAGCCTTACACATATGGATTTGGATATAATGATACACACACAAATGGAAATCAAACTTATGGACCTGCATTTACAACTAATTCACTGCAAAGTCGACATGCTGTTACTGTAGATATGATCTGTGACAAGATGAAACAGCAGCTGGGGACTCTTCAAGAGGTACATCGTCAACATAGAATGGACAATGAGAAAGCTTCATCTCAGCTGGAAACTGCTCAGAGTAACATCAAGAAGTTAGAGCGACAGGGAAGGAATGCAGAGCAGAGATTTAGTTTTTTCCAAGAGATGAGGGGGTATGTCAGGGACTTGATAGAATGCCTTAATAACAAGGTACCTGCAATTGATGAGCTAGAAACGTCTATGCATGCTTTGTTGAAGAATCGAGCTTGCTTAGTGGTCCAGAGGAGGCAAACAGATGTCAATGATCAAGCAGAGGATTTTCTTAATGCTCAAGCTGGACGCCAAAACTCAGCTAAAGCAGCAGATCAGGGGAAGTTGAGACGTACTGCAGAACGAGAGGGAAGAAGAGCACGGAGAAGAAAACACAGAGAAAAGGAGAAGGGCAAACCTTCCGTACCAGACACTCATCATGAAGGACAATCAACAGATGATGAAGAAACTGAGGCAGATGCTGTCAAGTTTAGGGCAGAAACAAATGTTGTGGAAGATTTTAGTTCCATTGACTCCATAAAATCAAGATTTGAAGAATGGAAGAACAAACACGAAGACTGTTATAAGAATGCATACATTTCACTTTGTCTTCCTAAACTGTTTGCTCCATTTATTAGACTGCAACTTTTGGACTGGAACCCATTTGAGGTGAAATGTTTAGAGATTGAAGAATTTCGTTGGTACAAAAGTCTTGTATTGTTTGGATGTGGAGATGATCCTTATGATATTGATGCCGATGACCTTGATGTCAAACTTATCCCAATGGTGCTAGAAAAGGCTCTCATTCCAAAACTAACTGgTCTTTTTGAACATGTTTGGGATCCTCTTTCGCAGAAGCAAACAATGCTGGCCATTAAGTTAATAAGGGGAATGGCTGAAGTTTACCCAAACTTTCATGCTCAGGATAAATCAACACAATCACTGTTTGCTGCAATAACCAACCGCTTAAGACGATGTGTAAGCGATGATGTTTATGTTCCTCTCTACCCCAAAAGTTTATTGGACAATAAATCTTCTGGGGCTTTGGCATTTTTGCAGAGACAATTTTGGAGTTGTGTAAagCTCATGGGAAATATCTTGAGGTGGGAAGGCCTTCTTTCCTCCGCCAGACTGCAGGAACTGGCAATAGATGGTTTGTTGAACAGATACCTTCTATTAGCACTACAACACTCTCATCTTTACTATGACAGCCTGGAGAAAATCACAGCCACGTTCCCTAAACAGTGGTTTAACGAGCAGCAGCAGACAACAGTACCTTCGTTAGAAGCGCTGGCACGTTTCCTTGCAACTTTAGCACTCAATATACAGCGGTCTTGTGCCGGGTGCCCTGAGgccgagaaaaagaaagcaagaagcGGCATCAAGAaagttatacaaattctccttcagTTAAGATCCGTGGACAAAGCAAAGATGGTAGCGGCAGAGCACAACATGGATGACGTTGTCAAAGATGTCTGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07842 all species →	GCFC	GC-rich sequence DNA-binding factor-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012890 all species →	Family	Intron Large complex component GCFC2-like	Interproscan
IPR022783 all species →	Domain	GCF, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12214 all species →	GC-RICH SEQUENCE DNA-BINDING FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13211	GCFC; GC-rich sequence DNA-binding factor	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.