Gene detail

Detailed information of RMX46148.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2729:40510...58121
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00017698

ATGATAGACGGAGGCGGAACTTTGGACCTTGCAGCTAAAGTGTCTGTGAAATATGTTTTCAGAATGGCCAGTGCCTTTGTTCCTGTGGACTTAGACAAACTTTTAGATGAATTTGAGGAAAAGGAGCAAGAACCAAAACCAGATCAAACCAGTGTAGTCAAAGTGCCAACTGTTGACAGAAAGCGAATAGCTACACAAAGTTTCCAGTCACCATTCCCTTCAATCCAGGAAGAGGTATTGTCTGATCAGGAATCTGAAAAATATCCTGATGACAGCAAGAATGACATTGATGATGACAGTGATGATAGTAGTAGTATTAATGGACTGATTAAAGCAGCTGAAGCTATAACTGATCAAAATGTGGCTGGAAAGACTTTAAGAGATGAACTAGAAGAACTGGAGGAAAGTGTGGTTTACATGCCTATTGATAATACTTGGCACGAAAATGCACAGAACTCTTCTGAGAGTGTCCACTCTGCTGGGCAGTTTGACTTGAATGGTGTGGAGGACACACACTACAATGCTAGTTCACGTGATAATGAAGAGAGCTTAATGACAACTCTAGCAAGCAATGAAGGAGTATCTGATGGCCAGGAAGCAAGTAGTAATAATTTTGATCATAAAGACGAACAAATAAGTAACAATGATGAGTCAGCTTTAGACTCTGCAGTGGCAGCAAATGGTGTTGCTGAACATATGCAAGATGTAGAATCTATGGGCTGGATTGAAGATACATCCAGAGACAACTCAGAACAGCCTGGAAATGATGAGGCTAGCCAGTGTGTTGTTAATGAATTTGTTGTTTCAGAACAACGAGAAACTCATGAACAATTTATGAACAGCACTGTTTTGCATCCCCAAGATGGTGGTATGTCTGTCGATGATGTAAATTTAACATCTTATGACCAAGTGCAAAGTGAAAATCTTCTTGAACCTGGATTGTCCATTGTGCCAGTAGTTGATGCAAATTTTGAAACTTACCCTTCAGATTCTGATCAAAGTCATAATGTAGGAACACAGGATTTTTATACACAGAATGAGAATGCAGATTCTGGCACCTCTTTTCAAACTGAGCCTTCAATGACAAATTCATATAATTTTAATTCAGAACAGGAGAGTTTTGACACAGGCAATCAGCCTGCTCAAGTTGAACATGAAGAAGGTGCACAGTCTCCTGTATTAACCATGTCATTACAGTCTCACGGAGCAGTAGAGGCTCGCCGCATCACCTCAGGAGAAGCTTGTCTTGGTAGAGTGCCACCCCTATGGGTGCCTGACTCTGTGGCTACTCACTGTATGAACTGTGGGTTGAAATTTAGTGTTCTGAAGAGGAGACATCACTGCAGAGCTTGTGGAAAGGCTCTGTGTTCATCTTGCTGTAATATGAAGTTTGTTTTACCTTACCTGGACAATAAGGAAGGTCGAGTTTGCCAAGTCTGCTGCAATGCCCTCTTAAGAGCTCAGGCATTATCAGAAGTGATGGAAAGCCAAGAGGATGATAATCTCAGAAATCATTTTGACAGTGTGCCAGATGATTTACTCATAGAAGATGTTTTAGAAGAACATGAAGACTTACCAGCTGACCAGCAAGAGGTCTCTGAAGGTGCAGAGGCCATAGGAGATGAACTTGATTCCACAGAGTTATCCAGCCCAGGAGACGATGTGGCCACAAGACCATCTTCCTCTCCCCCAGTTCTTCCTCCTCTACAAATCCCAGTGCTGCCACCAACAGATGCACCCAGCACTCCATTATCCACACCAGCATCCCCTGCTCTGTCTGATGACAGTGATTGCTTGTTTCGATTGGATGTTGATAATGTGCGGTCATTGTTGCCACAAGATATAACTACACTGCCACCAGTTTTGAAGGTTACAAATGAAGAGATATCAATTCAAGAAAGACCTGATCCTGCGGAAATCATGTATCAACTGAAAGACAGAACATTCATTGATTTTGAAGCAAATGGGGAAGTCCTCATAATTACTTTCTCCCATGCTGACAATGCTCTTTTGCTAACAGGTCTTCATGAAACTGTTGTATTCCTGCTGAATAAGAACTTGGTTGTCAAAGTCACTTTAGTGAAATTGAGCTGTTGTGTGAAACGCAAATGTTGGTGTTTTGTTACTGAAGGAATGGGGGCAGCTAACCAAGAAGAAATGGTGGTCCTGTTGGAGTGTCATCGTAAAGAGACAATGCTTCCAAAGGATGTCCTTTCACACTTCAATACAGCCTTTGCATATGCAAAACAAGGTCACACTGTGTCTGAACTTGGCTACACAATTTTTGGTCAACCATTTCTTGGCAGTAGTGACAATGCAGGCTTTCTATATATAAAACCATCATTTCAGTGTTTGAAGAACATCCCTGTTCCTTCCACTCCTTATGTCATAGGAGTGTTAATAAAACGCCTGGAATCACCATGGGCCCAACTGTTTCCTTTAAGGCTGCAGCTAAGACTTGGAGCAGAGTTTAGATATTATCCCTGTCCATTATTCAGTTCAAGAAGCAGATCAACAGTATATGGTGAAGTTGGACATACAATCATGAATCTGTTAGCAGTGGTAAAGATTCTCAATGCCACTGATGAGCATGTCATGGCTCTTGGAGCCAACTTCAGCTTAGAAGCAGACTCACATCTGGTCTGTATGCAGAGTGAACAAGGCTATAAAACTCAAGCCATCAACATACAGAATCAAGCCAGGAAAGTAACTGGAGCAAGCTTTATTGTCTTCAGTGGGGCGCTAAAGCCAAGCAGTCCGTTCATGGCAAAAGTCAACATTGTGGAAGATGGCATTATGGTTCAATTGACACCAGAAATGATTGAAAAGTTACGACATTCTTTGAAAGAAATGCAGGATTATTCAATTACTACAGGGGTTCCAGGTGGGGCTGGTGAAGAACAAGTCATTGTGGAATGGGTCAGTCGTCAAAATACTTCACAGCAAGCTAGCTTGAACAGTCCAATAGATGGTTTACAGCTAGGTTCTTTTCCAAGTGTCAAGGTTCACAGTGGATGTGACTTCACACGCAAGAATGTATTTAGGATACAATGGACAGAGGTGTTCTTTTTAGGTGAAGGACAACAGAGTGCATCACGGGACCTCAATAAACTCACTGGAGAGCTGGCCAAGGCTTTTTGCCAGACACTCGTGCCACACTTGTCTAAAATGAGCTCAGATGGATTCACCTTTGTTGGACTGAGAGTAAATTTGGATCCTGATAATGTTGGTTATCTTGCGGGAAGCAATCAGCAGCACCTCCCAGCTAATGTTATGGTGGATCTTGACAATGTTTTAGTTCCTGTGATACATGCTGCTGCAAATCACCAAAGAAGGCATTCGTTAAGTGCAGAGTTGTTGTTTAAAGTTTTGAGGCTGCTTTGA

Transcript

rna-pdam_00017698

aaattttgttttcgctGTGAGCTGGAAGGAGGGACATACAGTTTGATAACTTTCACTACTGGTTGTCGACTCTCCATTAGAAAAGCAGAACCTGCCAAACAAGTGAAACTTACCACAGGCCATGGAGAAAACCTCCAGCTTAGCAAGATATTTGAaGAAGCACTGTCTGAAATCTTTGACAGTTGTGACCTTGATGGGAATGGATCTTTAAGTAGAGAAGAATTCGACTTGTTCCAGTTTAAATCTGGTGGAGACCTTTGTGATGATGATGCATGGGAAATTATGAAAGataattttgaaatggagGATGATGAGATAACTCTGAAAGGATTCCTGGACCTGAACATGATGGAAGCACAAGATGCAGATGGTGATCCTAACGACTTATGGCTGACTCTTGAGAACATGGGCTATAACAAAGCTCTTGAGTTAGATcaggcaaaTCCGTTCTTGCTTGAGGTGTACTGTAACAGGTGCAGGCCATCAATTCAAGTAAATTCAGTGGTggagaacaaaaatgaagcTGTGCATAAAGCTGTAGTATCATCAGTGTTAAACAATGTTACCAAAAAGGAGAATATAAAAGGGATGAGGGACCTGGTTTTGTTCAAGTATGAAAGTTCCATTAGAGTGACCCTGGTGTTACAAAATATGATATGCTGTACTGTGTCAATGCCTGTCATTTTAAGACTTTTGCAGTCACCCACCTCAATTAGTTTGATTAAATTGAGAGCAGATTATATCTGCTTTTCCATTTCAGGTTGTTCATCATTTTGTACCCCAGGATGTGCGCAGGGAAATGTTTGTGAAATATTCTTTGACGATAGAAAAATGATCTTCTTTgttccaaaaaaagaaatacagcaggctatgaaaaatgaaaaattctgcATGAAGCTTCATTTTTAGAAAACTGACTACACAAATGAAGGCTCAAAAGATGTGAGCTTAGCATGTACAAGGATGCAACCAGCCTTATAGATGTAGTGTTTGCACTGATGACGCTAATACCTATTTaccacttttcatttttcaaggaaattagttttaatttcgAACCTAGCCAAGATAAGCGtatggaaagtttttttttttcttaatcaagCTTTGTTAATCACCAAAACCAAggtaataaaacaaatgtaaaaaaacagATTAGAGAAGAAATTGCGGCAACTTTTTTAGTGGGGcaatattttcagaaatcaGGGTAAGTGAAGAAGGAATTCTCATACGCCTTGGCTTAGAAAAACGTCGTTAGGTTTTAAAAATGGTTGTTGTTGAGGGTCGGTTCCCTTGATCAAAGATTCTTCAGAGTACCAAACGGTTTGATGCTAACTGTTATACCCCATGGAGTCTTACACAACATATCCTCCAAAGCTAACCGCTGATCGCTTACGTGAGCTCATGGGAGACTCACGAGGAAGGAGTAAGGAATTAAAGCTATCTACGTTgcataatgaaaattatgaaccAAAACCCAGATCTTCAAGACTGAATGGTGTTTGTTGCTGCaagaaaacgttttaaattaatgtttcGTGGTCTGTCATCGCCAGCTTCATGTAAAAGCCATGTGAAATGATAGACGGAGGCGGAACTTTGGACCTTGCAGCTAAAGTGTCtgtgaaatatgttttcagAATGGCCAGTGCCTTTGTTCCTGTGGACTTAGACAAACTTTTAGATGAATTTGAGGAAAAGGAGCAAGAACCAAAACCAGATCAAACCAGTGTAGTCAAAGTGCCAACTGTTGACAGAAAGCGAATAGCTACACAAAGTTTCCAGTCACCATTCCCTTCAATCCAGGAAGAGGTATTGTCTGATCAGGAATCTGAAAAATATCCTGATGACAGCAAGAATGACATTGATGATGACAGTGATGATAGTAGTAGTATTAATGGACTGATTAAAGCAGCTGAAGCTATAACTGATCAAAATGTGGCTGGAAAGACTTTAAGAGATGAACTAGAAGAACTGGAGGAAAGTGTGGTTTACATGCCTATTGATAATACTTGGCACGAAAATGCACAGAACTCTTCTGAGAGTGTCCACTCTGCTGGGCAGTTTGACTTGAATGGTGTGGAGGACACACACTACAATGCTAGTTCACGTGATAATGAAGAGAGCTTAATGACAACTCTAGCAAGCAATGAAGGAGTATCTGATGGCCAGGAAGCAAGTAGTAATAATTTTGATCATAAAGACGAACAAATAAGTAACAATGATGAGTCAGCTTTAGACTCTGCAGTGGCAGCAAATGGTGTTGCTGAACATATGCAAGATGTAGAATCTATGGGCTGGATTGAAGATACATCCAGAGACAACTCAGAACAGCCTGGAAATGATGAGGCTAGCCAGTGTGTTGTTAAtgaatttgttgtttcagaACAACGAGAAACTCATGAACAATTTATGAACAGCACTGTTTTGCATCCCCAAGATGGTGGTATGTCTGTCgatgatgtaaatttaacATCTTATGACCAAGTGCAAAGTGAAAATCTTCTTGAACCTGGATTGTCCATTGTGCCAGTAgttgatgcaaattttgaaacttacccTTCAGATTCTGATCAAAGTCATAATGTAGGAACACAGGATTTTTATACACAGAATGAGAATGCAGATTCTGGCACCTCTTTTCAAACTGAGCCTTCAATGACAAattcatataattttaattcagaaCAGGAGAGTTTTGACACAGGCAATCAGCCTGCTCAAGTTGAACATGAAGAAGGTGCACAGTCTCCTGTATTAACCATGTCATTACAGTCTCACGGAGCAGTAGAGGCTCGCCGCATCACCTCAGGAGAAGCTTGTCTTGGTAGAGTGCCACCCCTATGGGTGCCTGACTCTGTGGCTACTCACTGTATGAACTGTGGGTTGAAATTTAGTGTTCTGAAGAGGAGACATCACTGCAGAGCTTGTGGAAAGGCTCTGTGTTCATCTTGCTGTAATATGAAGTTTGTTTTACCTTACCTGGACAATAAGGAAGGTCGAGTTTGCCAAGTCTGCTGCAATGCCCTCTTAAGAGCTCAGGCATTATCAGAAGTGATGGAAAGCCAAGAGGATGATAATCTCAGAAATCATTTTGACAGTGTGCCAGATGATTTACTCATAGAAGATGTTTTAGAAGAACATGAAGACTTACCAGCTGACCAGCAAGAGGTCTCTGAAGGTGCAGAGGCCATAGGAGATGAACTTGATTCCACAGAGTTATCCAGCCCAGGAGACGATGTGGCCACAAGACCATCTTCCTCTCCCCCAGTTCTTCCTCCTCTACAAATCCCAGTGCTGCCACCAACAGATGCACCCAGCACTCCATTATCCACACCAGCATCCCCTGCTCTGTCTGATGACAGTGATTGCTTGTTTCGATTGGATGTTGATAATGTGCGGTCATTGTTGCCACAAGATATAACTACACTGCCACCAGTTTTGAAGGTTACAAATGAAGAGATATCAATTCAAGAAAGACCTGATCCTGCGGAAATCATGTATCAACTGAAAGACAGAACATTCATTGATTTTGAAGCAAATGGggAAGTCCTCATAATTACTTTCTCCCATGCTGACAATGCTCTTTTGCTAACAGGTCTTCATGAAACTGTTGTATTCCTGCTGAATAAGAACTTGGTTGTCAAAGTCACTTTAGTGAAATTGAGCTGTTGTGTGAAACGCAAATGTTGGTGTTTTGTTACTGAAGGAATGGGGGCAGCTAACCAAGAAGAAATGGTGGTCCTGTTGGAGTGTCATCGTAAAGAGACAATGCTTCCAAAGGATGTCCTTTCACACTTCAATACAGCCTTTGCATATGCAAAACAAGGTCACACTGTGTCTGAACTTGGCTACACAATTTTTGGTCAACCATTTCTTGGCAGTAGTGACAATGCAGGCTTTCTATATATAAAACCATCATTTCAGTGTTTGAAGAACATCCCTGTTCCTTCCACTCCTTATGTCATAGGAGTGTTAATAAAACGCCTGGAATCACCATGGGCCCAACTGTTTCCTTTAAGGCTGCAGCTAAGACTTGGAGCAGAGTTTAGATaTTATCCCTGTCCATTATTCAGTTCAAGAAGCAGATCAACAGTATATGGTGAAGTTGGACATACAATCATGAATCTGTTAGCAGTGGTAAAGATTCTCAATGCCACTGATGAGCATGTCATGGCTCTTGGAGCCAACTTCAGCTTAGAAGCAGACTCACATCTGGTCTGTATGCAGAGTGAACAAGGCTATAAAACTCAAGCCATCAACATACAGAATCAAGCCAGGAAAGtAACTGGAGCAAGCTTTATTGTCTTCAGTGGGGCGCTAAAGCCAAGCAGTCCGTTCATGGCAAAAGTCAACATTGTGGAAGATGGCATTATGGTTCAATTGACACcagaaatgattgaaaagtTACGAcattctttgaaagaaatgcagGATTATTCAATTACTACAGGGGTTCCAGGTGGGGCTGGTGAAGAACAAGTCATTGTGGAATGGGTCAGTCGTCAAAATACTTCACAGCAAGCTAGCTTGAACAGTCCAATAGATGGTTTACAGCTAGGTTCTTTTCCAAGTGTCAAGGTTCACAGTGGATGTGACTTCACACGCAAGAATGTATTTAGGATACAATGGACAGAGGTGTTCTTTTTAGGTGAAGGACAACAGAGTGCATCACGGGACCTCAATAAACTCACTGGAGAGCTGGCCAAGGCTTTTTGCCAGACACTCGTGCCACACTTGTCTAAAATGAGCTCAGATGGATTCACCTTTGTTGGACTGAGAGTAAATTTGGATCCTGATAATGTTGGTTATCTTGCGGGAAGCAATCAGCAGCACCTCCCAGCTAATGTTATGGTGGATCTTGACAATGTTTTAGTTCCTGTGATACATGCTGCTGCAAATCACCAAAGAAGGCATTCGTTAAGTGCAGAGTTGTTGTTTAAAGTTTTGAGGCTGCTTTGACAGACATCAGCAACAATTCCTTTTTAGCCATGTTGGTTACCTCATGAACAAGAAGCAACCCAAAGACAGGAAGAGGTTGAAGGACCTTTTCAGAGTACTCAAGAAGATTTGGcagaaaaagcagaaaataaatatgatatCTGTATTAATGTTCGTTTCAAATGTAAACTGGATTTTCTTGGGCTGTGgattaatttatttgagaCACAGCAAGAGATATTGCTGattcaaacaactttttaataCTGTAACTTAAAGTGAAATTATAAAGTTTGTTCAAGCATGAATCTGATGGAACAGGATATTCTTGTGTACAGTGTGCAATATAAGATTATCAGAAACTTCTCTTGTTCATATTTGGTTCTATGCATGGACTGAAAAGTATATAGCAAGATTGGTGTAACACACTTGGCACATggtaatcattttaaattatggTATTGAGGAAATATACTGTCTGGCACAAGGTAAACTAGTTgatcttttattatttatgatATCAGTTCCATTAGCTCACCAATATGCCAGTTGATAACATGTAGTAATTCTTGAATTACAAACTggtataatttatttgataagttattttgattatgatgatttaaaatgataacatgCAGTAATTCTTGAAGTATAAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004643 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11979 all species →	SARA_C	Smad anchor for receptor activation-like, C-terminal	Domain	Interproscan
PF01363 all species →	FYVE	FYVE zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR017455 all species →	Domain	Zinc finger, FYVE-related	Interproscan
IPR022557 all species →	Domain	Smad anchor for receptor activation-like, C-terminal	Interproscan
IPR000306 all species →	Domain	FYVE zinc finger	Interproscan
IPR006058 all species →	Binding_site	2Fe-2S ferredoxin, iron-sulphur binding site	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46319 all species →	ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016197 all species →	Biological Process	endosomal transport	Interproscan
GO:0031901 all species →	Cellular Component	early endosome membrane	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0051537 all species →	Molecular Function	2 iron, 2 sulfur cluster binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04679	MADHIP, SARA; MAD, mothers against decapentaplegic interacting protein	-	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.