Gene detail

Detailed information of RMX46253.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2712:315074...320819
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00000536

CCCACTCTGTCATAGCatccaacatggcggacgGCTTTAGTCTTTTGAACCTTGATGTTATTCAGAAGCAGTACTTGCAAATGGCTCcgttgaaattatttctttggaaaGCACTTGAGCAGGCAAGTCTCGACTtggaaaaacagagaaaaatccTATGCATGactTATTTCTTCACTGCAGAATCGTCGTATGCTCCTTCGGTATCGTACCAAAGACTGTTTCTGAAACGCATGCTGAAGTTATGTGAGGACAGGTGTATCAAGATCGCGGATGAACTCTATGAAGCATACGGAGATGTGTGTGGTAAAGCAGAACACCTGGATAACAAGTGCTTTAAAACATATGTACTGCCATGTGGGGCCTTGTTAACCCTTGAAGAAACTCAACAGTTTATCTCTAAAGGAACAACAGGACTTAGCACCTGGATGGCAGGAGAATACCTTGCTGAGTGGGCACTAGAAAACCCTTCCCTATTTCAAGACAGATCCATCATAGAGCTGGGCTGTGGTACTGGACTTACAGGACTTTCTATTTGCTCCATGAGTTCACCAAGCCAGTACATATTCAGTGACTGTCATAATGAAGTGTTCAAAGCACTTCAAAGCAACCTTGAACTGAATGGATTTGTCATAAGCCAGGCAGACAGTGAATTACcatatttaaataacaaaaggacTTGTGAGTCTCACACAGAGAGTGACATGCATAAACATTGGAAAGGATTGGCTCTCAGGAATCAAGATAATCATGGCTACTCACATCACAGAGATATAACTTCTCAGCAAGACTCTGGAGTGACAACCAGCAAGACACCTGATATGGAAATAACTTTACACAAGTTTGACAAAACACCACAGTGTATGGCATGTTTATCAGACTATTCTGAAAGTGAAGATATTCATGACCTGTCAAGTTGTGCGTCAGATTTCATTGCTTGCTATTCAAGACATCCTTCAAGTCAGATAAGGCACTTAATTGAAGACTGTGCCAATCATTCTTGGGACACTCAAGTTGACATTTGTAAATTAGACTGGACAACTTTAAAGAAGAGTGATTTGAGGAGATTTTCAACTGGGATTATTTTAGCTGCTGATGTTATTTATGATAGTGAGTTGACCCCAGCATTAGTGAGAACTTTGCATCTACTCTTAAGTACTGGTGGCGATAAAAGGGGGAAACCTGTTGCTTTCATTGCTTCAACCATCAGGAATCTGCAAACATATGAATTGTTTCTTAATTGCCTTTATGAACACGATATTTCCTGCAGTGAAGTAACCAAGCCAGcaaatcaagttttttattatgatcagagttgtgaaattaaaattatcaagcTTGAAGTCTAATTTAATGAGCTTTAATTGTGTGGTATTCCTCAGACAAAATAATGTAACAgctttcctttgttcaaaagttaTTCATACTTTATTTACTATACACAATGATATTGGAAGTTTTACCACACAATacatttttacattaaaaCTAAACCAATTAACATATTattagaaaagtttttaaatacttaGTACTATGAAGTAGTCATTCTTAATagtaaaactaaaattcaGAAGAAGTCAGATGAAACCTAACAGTgtcattcaaatgaaacaaataaattaatttattctggCCTTTTTTCCGAACTGATATAGTTGAAAATCTCAGagattgaagaattttttaatgtagaTCATttgttgaaaaggaaaaacaattttaatattgCTCCATTCTGCAATTAGCTAGCAAccttaaaaatatatcattacATTCAAAGGGTAGTTACTTTTAGAACTTTAGAGTAATCCACCCttgatgatcattttcatattAAGTCTCATAAAtcataactttgtttttaccatgtaaaatatcaaataggATTCTattctaaaatttctttcctcgCAGATTTAAAGTAATTCATTAATTCTAAAGCCCAGATGCCACTTAgtcattttaattcattcttaAAGTACTCTCTGTAGAGAAGTTTCCTACCAacatttaattacttttactGTTTACAATTTGCAGAAAGGAAATGGCAAAACTATAGAAtacatttattaaataaaacaccACATATCTACAATTGCTCTTTACTGAACTAAGAAAATGCTGATCTTTTAGAAGAATCACACAAAACTTGAACCTGTCTGGGGTTTGCAACTCTTCatcctttaactctcagaaatgattaacacGAATactccctacaatatccatacattcaccagcaaacaggtaatgtgaatacttaaacttatcacaAAGTTATATCtatctaacatcaaattcttgtaaccaatttacaaggaaatgtgtggcagctagaggggagaattacaaatcagATCTAGGAGTTAACAGGTTAAAGGTCGATTGTCAGTCTGAATGCATTGCTGAATTTCTGTCAATTTGAAAATCGTCACTTTGAAAttacagccaatcaaaacattaCATCAAGACCacttcaaataaacaaaaagacaaagacaagAGGCTACTGGGTGTGGACAACAACCTTCAGTAGCTATAACAAAAGTTACATATTATGCTATCTAATATTAAATACTAGCTGCCCATTACAAGTGTACTCTAT

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10294 all species →	Methyltransf_16	Lysine methyltransferase	Family	Interproscan
PF14904 all species →	FAM86	Family of unknown function	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019410 all species →	Family	Lysine methyltransferase	Interproscan
IPR029426 all species →	Domain	FAM86, N-terminal	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14614 all species →	HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for RMX46253.1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22696	EEF2KMT; protein-lysine N-methyltransferase EEF2KMT	EC:2.1.1.-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.