Gene detail

Detailed information of RMX46348.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2712:872939...874825
NR annotation: no NCBI-NR hit recorded
Species abbreviation PDAMI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 activity RING\|U-box · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04757 all species →	Pex2_Pex12	Pex2 / Pex12 amino terminal region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017375 all species →	Family	Peroxisome assembly protein 12	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR006845 all species →	Domain	Pex, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12888 all species →	PEROXISOME ASSEMBLY PROTEIN 12 PEROXIN-12	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005778 all species →	Cellular Component	peroxisomal membrane	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0016558 all species →	Biological Process	protein import into peroxisome matrix	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005779 all species →	Cellular Component	obsolete integral component of peroxisomal membrane	Interproscan
GO:0006513 all species →	Biological Process	protein monoubiquitination	Interproscan
GO:1990429 all species →	Cellular Component	peroxisomal importomer complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13345	PEX12, PAF3; peroxin-12	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.