Gene detail

Detailed information of RMX46482.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2707:17979...18812
NR annotation: no NCBI-NR hit recorded
Species abbreviation PDAMI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21362 all species →	Sina_RING	E3 ubiquitin-protein ligase sina/sinah, RING finger	Domain	Interproscan
PF21361 all species →	Sina_ZnF	Sina, zinc finger	Domain	Interproscan
PF03145 all species →	Sina_TRAF	Sina, TRAF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049548 all species →	Domain	E3 ubiquitin-protein ligase Sina-like, RING finger	Interproscan
IPR004162 all species →	Family	E3 ubiquitin-protein ligase SINA-like, animal	Interproscan
IPR013010 all species →	Domain	Zinc finger, SIAH-type	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR008974 all species →	Homologous_superfamily	TRAF-like	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR018121 all species →	Domain	Seven-in-absentia protein, TRAF-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45877 all species →	E3 UBIQUITIN-PROTEIN LIGASE SIAH2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan
GO:0031624 all species →	Molecular Function	ubiquitin conjugating enzyme binding	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX46482.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.