Gene detail

Detailed information of RMX46867.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2555:28465...37845
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00022070

ATGGCGGCAAAAATGCACTCGGATGTGAGTCGAAAGTGGCAAACTGATTTGCCTAAACACCCAGTTTTCCGAGAGCTCTCTGCAAGGGTTGGTGAAGGAAATTCAAGAGAAAGAGAGGAATCGCCGGAAAGGACATCAAAAAACATTTTAATAGAAAATGATGGTGAAATATTTTTATGGAATTCCTCGAACACTCGTGTTCTGACAGCTAATCTGAAAAACTTACATTTTGAAAAAGGACGGTCTGCTAAGTTCCAATCTTTTGTATGCACTGAGGCTCCTTTATTTGATGTGCATTCCATGCTGTTCAGTGCTTCGTCAAAGTACCTTTTGCTTGTAGGACAAAGAGGAATAATGGTTCTTGAGATGCCAATGAGATGGGGAAAGTTTGCTGCGTATGATGGTGGCAGTGAATCAGTTCTCTGCAGGACATTTCCTATTGATTCAAGATTCTTTGTTACAAATCACAAGTTAAAGGTCCTTGATGTCAAATGGCATCCAGGAAGCCAAACTGATACTCATCTTATGGTGCTTACATCAGACAATAACTTGAGACTTTACAACATCCTCAAGCCATCTTCGCCGGAAGAAACCATTTCCTTAGGGGAGTCCTCTTCCCTGACGGCTGAATACAGTCAGAAGTCAATATCTATTGGATCTTCATTGACATTTGCAGCTGCTCTTGGAGAGAAAGCAATTGCATTTGATTTTGCACCAGCTGTTAGAGATACCAACCCAAAAGCAAGACTAAGCTCCAGTGATTCTGAACCAGATGTTGCTTACCCTGTTTTCATTTTGAGAGAAAATGGAGACATCTTTTATCTTCTTCACAGAATCTCTCAGATCCGGCATCAACCAAAAGTTTATGGTCCCGTTACAATGTTCCCTGCAGCAGATGATAATTATGGTCAGGATTCTTGCTCTTTACTGTGTCTTCAGTGTCAACCCCCTGTTATTGTCATGGCAACAGCAAGTGGAAAAATTTATCACTGTATTGCTTTGGAATCTGAAGAATCTGATGATGCAGAGGAGGAAGAAGTCTCCTGGAGCAGACATGAACAGACTCAAACCAATAGCTTTCATGGAAAGCTTTCACTCTTGGTTCATGAATGCGTTGAACTCCAGCTGTCTTTACTGAATGATGGAACAGGATCCCAGTCAGATAGGAGCTCTTCAGAAGAGGAGTCTGATGAAAATGAAAACTTGTTCATTTTGAGACTCCAGCGAGATCCAGTGTCTCCTTATCTGTATCATTGTTCTCATATTGCTGGAGTACACACTGTTTCATTGCCTTGGACCAAGAAACTACAGAGTTTTTGTGTGCAAGATGATAAGAGTTACTTTGACATTGATGAAGCAGCCACTGTTTATCACATGATATGTACATCACCAACAGCAAGTGCACTATCTCCAGTGCTTGGTGTTGGTGTGATAAATAGCAAAATCCTTGGTTCTGCAATACTATGTCTGACCTCAAAGATGGAATGTATTGTTCAACCTTTGAATTTGTTAGATAGACCATATTCCCCTCCAACAACAGATGCAGACCTAGAAACCAGCCATGAAAGTGCTGGGCCTTCACCAATAAGGCTACTGAATGTTGGATTATTCAAAAGCCAGATTGAGAAAATTCTATTAAGAAACACATCAACACCATTGTTACAGGGTGGTGAAGAATCTGAAAAAATCTCACAGCAAGACCTTTATCAGCTGCTTACACAAGCGCAAGAAATACTAAGAAAACAGTACATTCAAAAACAAAATGAAGCTAGGGAAGAGATAGAAAAAAGGATCTCAATCCTAAAAGATCAGAAAGCACAGCAGACCCAAGATTTGAGAAAACTTAAAGATGTCAGCAGCTACCTCAGAGACCAGGCTGAGAAACTGGCAGAAAGACTGGTGGATACTTCAGATAAACATATGCAACTTGTCCAAAGACTGGAAGCTCTCTACCGCTATGCTCACCGTGGCATTCCAGTTCTCTCCTGTGCTGAGACTAAAATGAAAGAAGAGTTAGAGGACATTGAAAACTTTTTGAGGTTTCACAAGGACTCTTTAGAACAGATTAAATTGAAACATTTCTACTCCAAGAGAAGTCCAAGAAGGTCATCTTCAAAGTCACCATTTGTTAATGCATCACAGCAGAGTAACATTAGGAAAGTGCTGACTGAAGAGAGTGAAGCAATTTCTGACCTTGTGAATCAAGTTAAAGAGCTAAAACTTCAAGTTGGACTATAA

Transcript

rna-pdam_00022070

CAGACAAGGACATGGCGGCAAAAATGCACTCGGATGTGAGTCGAAAGTGGCAAACTGATTTGCCTAAACACCCAGTTTTCCGAGAGCTCTCTGCAAGGGTTGGTGAAGGAAATTcaagagaaagagaggaatCGCCGGAAAGGAcatcaaaaaacattttaatagaaaatgatggtgaaatatttttatggaATTCCTCGAACACTCGTGTTCTGACAGCTAATCtgaaaaacttacattttgaaaaaggacGGTCTGCTAAGTTCCAATCTTTTGTATGCACTGAGGCTCCTTTATTTGATGTGCATTCCATGCTGTTCAGTGCTTCGTCAAAGTACCTTTTGCTTGTAGGACAAAGAGGAATAATGGTTCTTGAGATGCCAATGAGATGGGGAAAGTTTGCTGCGTATGATGGTGGCAGTGAATCAGTTCTCTGCAGGACATTTCCTATTGATTCAAGATTCTTTGTTACAAATCACAAGTTAAAGGTCCTTGATGTCAAATGGCATCCAGGAAGCCAAACTGATACTCATCTTATGGTGCTTACATCAGACAATAACTTGAGACTTTACAACATCCTCAAGCCATCTTCGCCGGAAGAAACCATTTCCTTAGGGGAGTCCTCTTCCCTGACGGCTGAATACAGTCAGAAGTCAATATCTATTGGATCTTCATTGACATTTGCAGCTGCTCTTGGAGAGAAAGCAATTGCATTTGATTTTGCACCAGCTGTTAGAGATACCAACCCAAAAGCAAGACTAAGCTCCAGTGATTCTGAACCAGATGTTGCTTAccctgttttcattttgagagaaaatggaGACATCTTTTATCTTCTTCACAGAATCTCTCAGATCCGGCATCAACCAAAAGTTTATGGTCCCGTTACAATGTTCCCTGCAGCAGATGATAATTATGGTCAGGATTCTTGCTCTTTACTGTGTCTTCAGTGTCAACCCCCTGTTATTGTCATGGCAACAGCAagtggaaaaatttatcactGTATTGCTTTGGAATCTGAAGAATCTGATGATGCAGAGGAGGAAGAAGTCTCCTGGAGCAGACATGAACAGACTCAAACCAATAGCTTTCATGGAAAGCTTTCACTCTTGGTTCATGAATGCGTTGAACTCCAGCTGTCTTTACTGAATGATGGAACAGGATCCCAGTCAGATAGGAGCTCTTCAGAAGAGGAgtctgatgaaaatgaaaacttgttcATTTTGAGACTCCAGCGAGATCCAGTGTCTCCTTATCTGTATCATTGTTCTCATATTGCTGGAGTACACACTGTTTCATTGCCTTGGACCAAGAAACTACAGAGTTTTTGTGTGCAAGATGATAAGAGTTACTTTGACATTGATGAAGCAGCCACTGTTTATCACATGATATGTACATCACCAACAGCAAGTGCACTATCTCCAGTGCTTGGTGTTGGTGTGATAAATAGCAAAATCCTTGGTTCTGCAATACTATGTCTGACCTCAAAGATGGAATGTATTGTTCAACCTTTGAATTTGTTAGATAGACCATATTCCCCTCCAACAACAGATGCAGACCTAGAAACCAGCCATGAAAGTGCTGGGCCTTCACCAATAAGGCTACTGAATGTTGGATTATTCAAAAGCCAGATTGAGAAAATTCTATTAAGAAACACATCAACACCATTGTTACAGGGTGGTGAAGAATCTGAAAAAATCTCACAGCAAGACCTTTATCAGCTGCTTACACAAGCGCAAGAAATACTAAGAAAACAGTacattcaaaaacaaaatgaagctaGGGAAGAGAtagaaaaaaggATCTCAATCCTAAAAGATCAGAAAGCACAGCAGACCCAAGATTTGAGAAAACTTAAAGATGTCAGCAGCTACCTCAGAGACCAGGCTGAGAAACTGGCAGAAAGACTGGTGGATACTTCAGATAAACATATGCAACTTGTCCAAAGACTGGAAGCTCTCTACCGCTATGCTCACCGTGGCATTCCAGTTCTCTCCTGTGCTGAgactaaaatgaaagaagagtTAGAGGacattgaaaactttttgagGTTTCACAAGGACTCTTTAGAACAGattaaattgaaacatttctaCTCCAAGAGAAGTCCAAGAAGGTCATCTTCAAAGTCACCATTTGTTAATGCATCACAGCAGAGTAACATTAGGAAAGTGCTGACTGAAGAGAGTGAAGCAATTTCTGACCTTGTGAATCAAGTTAAAGAGCTAAAACTTCAAGTTGGACtataattttacaatattaGTCACAAGATCTTGTCAGAGCTGCAAATAACTTTTCATAGAAGAGatttttttgatcaaatgGCTGTTCACACTGTGAATAGCATTTGTGTAAATTGAAGTAGCCTGAGGTGAAGAGAGACATTGTAACTGCTTATCTAAACCtctaatttgtaaaattttgtgagTAGTAGTCACCtgttttttgacaaaaagcAAGCCAGAAATAATTGTAAAGAAGCTTGTCAATAACTTCTATCAGTCTAAACACATTAGCAGTAAAGCCAACTTAACTTAATTGCAGGAATAAACCTGATGCAGTTACTCAgtcctttaaccctttaactcctgtgagtg

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004303 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10168 all species →	Nup88	Nuclear pore component	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037700 all species →	Family	Nucleoporin NUP88/NUP82	Interproscan
IPR019321 all species →	Family	Nucleoporin Nup88	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13257 all species →	NUCLEOPORIN NUP84-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000055 all species →	Biological Process	ribosomal large subunit export from nucleus	Interproscan
GO:0000056 all species →	Biological Process	ribosomal small subunit export from nucleus	Interproscan
GO:0005643 all species →	Cellular Component	nuclear pore	Interproscan
GO:0006406 all species →	Biological Process	mRNA export from nucleus	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan
GO:0006913 all species →	Biological Process	nucleocytoplasmic transport	Interproscan
GO:0017056 all species →	Molecular Function	structural constituent of nuclear pore	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14318	NUP88; nuclear pore complex protein Nup88	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.