Gene detail

Detailed information of RMX46871.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2555:47744...56672
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00022074

CTCACGTGTAGTATGGTTGGCATCATCATGGCGGCCAAGCCACAATGAAGGAACCATGGATTTCTACTCGTAACTTTGCGAAATTACTGTCGGAATATTTGCCTTTGGTTGGAAGTGTTTGTTTTCCTATCAAAATTAAGTGCGGTCAGTTTAACAGCTTTTACCTCAAGCTGCTGGAAACTTTTTGACACCAGTGTCCACTATCACAGCTGATCACAATGAGCGGTGTTATTGGTCAGACAAGAAACGTTTTACCATTGTTTAGAACTTCATTTACGTGGAGATTTAAAAGTGACTATCTGTACAAATTATCTTCACAAAGTGTGTCATCTTCACGGTGTGTTTGTTGCGGTATTTCGTGTCTAAAACAGAGAAGCATTTTATGCAAAATATCGGATCCGAAGATGTCATCTGTATTGCGGTATTCTACATCAAGTGAAGTGTATCCTCCGgAGGCAAAGGtccaacaaaacaaagtcCCTCTGACAAACAAAGctttcAGGCAAAATATTGTCAAATTTGCCACTCAGCTCAATGTGGATatttcagaagaaagaaatcttttaGCAGCATTCACTCATGAGTCATTCCTTCTACAAAATGCCGACAAACTATCAGGGTCATTTGGATTTAATGAAAAGCTTGCTTTTATTGGAGCACAAACTGCAAGAAAGAGCTTCACTGAGTAcctgtttgaaaactttcctcAACTTTCAGCTGCAGAGATTTGGGATCTACAGAACAGTTTTTTAGAAGATTTTATAATGCAGAAGGCAATAGAATGGGACATTATGCAAAAAACTCTCTACTATCGACAATCTAAAGAACTGATGCAGAGACAAACTGTGCTTGCTCTGGTGGGAGTAGTTTATACTCATCAGAGTCCTAAGAATGCAGATGCATTCGTGAAGACTCATCTTATACCTGAGCTAACTAAAGAGAAGGTTGAAGAGATGGTGAAACTCCAACACCCCAAGTTCATTCTTCAGCAAATATCTGTTGAAAAGGGAcactttcctttaaaagtaaaACTTGATTTCCAAGAGAAAAGCAAGTCCAAGTATAATGTGAACAACCCATTCATCTATGGTGTCATTGTGACAAGGGGTGAAAATAGGGAAATGTTAGGGAAAGGTATCTGCCACTCACTTGTATCAGCAGAGAAAAAGGCATGCCAGAGGGCTTTACTAGATCACCATCCTGATGAATTCAACAAGTTTCAGTTAGCTCTTGATGGGGatgattttgtaaaagaagaaaatattgatcTTGGTTTGACTGTTGCTGAACAGAGAGTAGTTGAGTTGGAAAAAGAAAATGACAGTTTTGGATTCCACATAAGGGGAGgagagatgaagaaaaaacagacaGACAAGTTTCTTGAGTGTTATTACATGTCACCAGTGTTTATATCTCACATAGTGAAAGACAGTATTGCGGACAAACATGGAGGACTTAAGGTTGGAGATAAAATTCTTGCCATAAATGACAGAAGTGTGGAAGGACTTGATCACAAGCGTGTTGTGAAGCTTTTGAAATCTGTTTCAGgccCTGTGTCATTTACTGTTACACACTGCAGAgaaaCTTTAATAGCCGACAAGCTTGAGCAGAGGTTTATAGAAATAAGGCGTAAGAAACGTCTGGCAGAGTTATCATCTGATGTGTGGTCAGAATGGCACCAAGCACAGTCTGACAAGGCTCCATCACAGTACAAAGATGTCCTTAAATATCACAAGAACCCATCATCTTAGTATGGCTGAAAATATGTCAACTAAGGAAAAGTTGTGTCCAACTCAGAAGGCTCTCTCTGgctgaaataaattgtttggtGTTTGTATCACAAGCCTTTTTGTTGTATCTGCTGTGTGAGTTGATTTCACCGTTTACACCATAACATCGGCTTGCATTTTCTCCCAACTGtactctatacatttccttaggttctgtcaaggagaatttgacaATCAAGTCTCTTTAggtggtgataattttattcttgtaaccttGTCATTTGGGGGTGATTGAGCcaaaattagatgctagtcgcTTATAGGGGTCCACAAACATCAACATTTAAGAGTTTGCAAAGTGAACTGATCAAAGCCAGTGTCATTCCTGTGTAACTAGATTCCACAGTCTCTCAACTTTTACCTTCAAGATCCAGAAGAAGTTGTGAGCCACTGGAAGGGGAGATTCGTCTGTGACATATTTCATCAACAAgaactattttgaaaaatttagaacaTTTTA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan
PF14622 all species →	Ribonucleas_3_3	Ribonuclease-III-like	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR051109 all species →	Family	Membrane-associated multiprotein complex regulator	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR000999 all species →	Domain	Ribonuclease III domain	Interproscan
IPR036389 all species →	Homologous_superfamily	Ribonuclease III, endonuclease domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14063 all species →	PROTEIN LIN-7 HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005911 all species →	Cellular Component	cell-cell junction	Interproscan
GO:0007269 all species →	Biological Process	neurotransmitter secretion	Interproscan
GO:0016323 all species →	Cellular Component	basolateral plasma membrane	Interproscan
GO:0045199 all species →	Biological Process	maintenance of epithelial cell apical/basal polarity	Interproscan
GO:0045202 all species →	Cellular Component	synapse	Interproscan
GO:1903361 all species →	Biological Process	protein localization to basolateral plasma membrane	Interproscan
GO:0004525 all species →	Molecular Function	ribonuclease III activity	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX46871.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.