Gene detail

Detailed information of RMX46896.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2532:80212...98263
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00014501

ACAAGATCTTCTGGAAGTCATATCGCTGTTGTGGCCAGTGAAAAGGGTTTTGGGAGGATTTCGTGGACAATGAAAAAATGGATTGTCTTACTCGGCGGGGCTATGTTCTGTGTCTTTTTCATTTCTATGTATATGGTGGTGGATCAACTAGGAAGACTGCCAAGTTCACACGAAATTTTCAAAAATGAGGTTACAAAGCAAATAAAAGAACCTTTGGATTTTCTGGAGAAAGATTTGAATAAACTGCAAGTAGACTTATTGAGATCTGGTAAAATAATTGATGGTTTGCAGAATGCTGTTGATCAATTGAGATTTAATGGTCGAGAACCACCTACTGAAAAGACACAGGATTTGTCACCAGTAAGAAGACCTGCAGTGCCTGCCAGTGACATGGATGACGGCTGTATATTCTCTGGTTCAGCATCAGGAAAATCAGCCAATGTGAAGATGTTAGACATGTTTGATGTGATGCCATTTGATAACATTGATGGCGGTGCATGGAAGCAAGGTTGGAATGTGCAATATGATGACACAGCATTTGACAAGGAGCCTTTAAATGTGTTTGTTGTACCTCACTCACATAATGATCCAGGCTGGATCAAGACTTTAGATCAGTACTACACACAGCAAACCCGACATATTCTTGATAATGTTGTTGATGCACTTGCAGTAGATAAAAAGCGCAAGTTTATTTGGGCAGAGATGTCATATTTGTCAATGTGGTGGAAGGAAGCTGATGAGAAAAGGAAAAAGCTTGCTTTAGAACAGTTAACCAACGGCCAGTTGGAGATTGTAACAGGAGGATGGGTGATGAATGATGAGGCAAACACTCATTATTATGCCATGCTGGATCAGATGATTGAGGGGCATCAGTGGATTGAAAAAAATCTTGGTTCAGGAATTAAGCCGATGTCTGGCTGGGCCATTGATCCCTTTGGACACACACCCACAATGGCTTATCTTCTGAGACGCATGGGTTTCCATTCTATGTTGATTCAAAGGACGCATTATCAGGTGAAAAAGCATCTTGGGAAGGAGAAAAATCTTGAGTTTATGTGGCGACAGAACTGGGATCATGGATCATCAACTGACATGTTTTGCCACATGATGCCATTTTACAGTTATGATGTTCCTCACACTTGTGGTCCAGATCCAAAGATTTGCTGCCAGTTTGATTTCCGTCGTCTGCAAGGTGGTGGTATAAGCTGCCCATGGAGAGTTCCACCTGTGAGAATTGACGATTACAATGTTGCATCAAGAGCCAAATTATTGTTAGATCAGTACAAGAAGAAAGCTCAGCTGTACAGAAGTAATGTGTTGTTTGTACCTTTGGGAGATGATTTTCGATATGAGACAACATTTGAGACTCACGAGCAGTATACCAACTATCAGAAACTTATGGACCATATCAATTCTCATCCAGAACTGAAGGCAACGGTACAATTTGGGACTTTGAGTGACTATTTCAATGCACTATGGAAAACCACAGGTACTGAGCCTGGAGGCCAACCAAAGGGGTTCCCAGCTTTGAGTGGTGACTTCTACACTTATGCAGACAGGGATGATCACTATTGGAGTGGATATTATACATCCAGACCATTCTACAAGAATATGGACAGGGCACTGGAAACACAACACAGGGCTGCTGAAATAATATTCTCAGTGGCAGAGTCCCATGCTCGCCACCATGGAAGTTCCAGCTTCGCTGTGGAGCAGCTCTATGGTCTTCTCACTAATGCACGTAGAAACCTGGGCGTATTTCAACATCATGATGGTATCACTGGAACAGCAAAGGACTTTGTAGTTGTTGATTATGCCACAAGGATGCTCCAATCTTTGAATGACATGCAGCGAGTGATACAGGACTCTGCCCACTTTTTGTTGACATCAGACAAATCGCACTACAGGACACCAGATAAAGTGTTACCGCCCCTTAAGTTTGGTGAATCCAGACAAGCTCAAGATTCTATGCCAACTAAAGAGGTGCTAACTTTGTCCAATACACCAAGTTATTCGAGCAATAGTCAGGTCTTACAGACATAA

Transcript

rna-pdam_00014501

ACAAGATCTTCTGGAAGTCATATCGCTGTTGTGGCCAGTGAAAAGGGTTTTGGGAGGATTTCGTggacaatgaaaaaatggatTGTCTTACTCGGCGGGGCTATGTTCTgtgtctttttcatttctatgtATATGGTGGTGGATCAACTAGGAAGACTGCCAAGTTCACacgaaattttcaaaaatgagGTtacaaagcaaataaaagaaCCTTTGGATTTTCTGGAGAAAGATTTGAATAAACTGCAAGTAGACTTATTGAGATCTGGTAAAATAATTGATGGTTTGCAGAATGCTGTTGATCAATTGAGATTTAATGGTCGAGAACCACCTACTGAAAAGACACAGGATTTGTCACCAGTAAGAAGACCTGCAGTGCCTGCCAGTGACATGGATGACGGCTGTATATTCTCTGGTTCAGCATCAGGAAAATCAGCCAATGTGAAGATGTTAGACATGTTTGATGTGATGCCATTTGATAACATTGATGGCGGTGCATGGAAGCAAGGTTGGAATGTGCAATATGATGACACAGCATTTGACAAGGAGCctttaaatgtgtttgttGTACCTCACTCACATAATGATCCAGGCTGGATCAAGACTTTAGATCAGTACTACACACAGCAAACCCGACATATTCTTGATAATGTTGTTGATGCACTTGCAGTAGATAAAAAGCGCAAGTTTATTTGGGCAGAGATGTCATATTTGTCAATGTGGTGGAAGGAAGCTgatgagaaaaggaaaaagcttgCTTTAGAACAGTTAACCAACGGCCAGTTGGAGATTGTAACAGGAGGATGGGTGATGAATGATGAGGCAAACACTCATTATTATGCCATGCTGGATCAGATGATTGAGGGGCATCAgtggattgaaaaaaatcttggttCAGGAATTAAGCCGATGTCTGGCTGGGCCATTGATCCCTTTGGACACACACCCACAATGGCTTATCTTCTGAGACGCATGGGTTTCCATTCTATGTTGATTCAAAGGACGCATTATCAGGTGAAAAAGCATCTTGGGAAGGAGAAAAATCTTGAGTTTATGTGGCGACAGAACTGGGATCATGGATCATCAACTGACATGTTTTGCCACATGAtgccattttacagttatgaTGTTCCTCACACTTGTGGTCCAGATCCAAAGATTTGCTGCCAGTTTGATTTCCGTCGTCTGCAAGGTGGTGGTATAAGCTGCCCATGGAGAGTTCCACCTGTGAGAATTGACGATTACAATGTTGCATCAAGAGCCAAATTATTGTTAGATCAGTACAAGAAGAAAGCTCAGCTGTACAGAAGTAATGTGTTGTTTGTACCTTTGGGAGATGATTTTCGATATGAGACAACATTTGAGACTCACGAGCAGTATACCAACTATCAGAAACTTATGGACCATATCAATTCTCATCCAGAACTGAAGGCAACGGTACAATTTGGGACTTTGAGTGACTATTTCAATGCACTATGGAAAACCACAGGTACTGAGCCTGGAGGCCAACCAAAGGGGTTCCCAGCTTTGAGTGGTGACTTCTACACTTATGCAGACAGGGATGATCACTATTGGAGTGGATATTATACATCCAGACCATTCTACAAGAATATGGACAGGGCACTGGAAACACAACACAGggCTGCTGAAATAATATTCTCAGTGGCAGAGTCCCATGCTCGCCACCATGGAAGTTCCAGCTTCGCTGTGGAGCAGCTCTATGGTCTTCTCACTAATGCACGTAGAAACCTGGGCGTATTTCAACATCATGATGGTATCACTGGAACAGCAAAGGACTTTGTAGTTGTTGATTATGCCACAAGGATGCTCCAATCTTTGAATGACATGCAGCGAGTGATACAGGACTCTGCCCACTTTTTGTTGACATCAGACAAATCGCACTACAGGACACCAGATAAAGTGTTACCGCCCCTTAAGTTTGGTGAATCCAGACAAGCTCAAGATTCTATGCCAACTAAAGAGGTGCTAACTTTGTCCAATACACCAAGTTATTCGAGCAATAGTCAGGTCTTACAGACATAACCTTGTTATTATAGGGCTTTAGTATTTTACAATTCCCTGACTACAGAAAGAGAGCAGTTAGTCAGCCTTCACATCTCGGACCCAGCTGCCATGGTATGTTCACtgaattcagtttttataAAAGTACACAGGCTCTCTACTTTTCAGGTTAGTGACAGTCAAGGAAAGGAAGTTCCAAGTCAGGTGAACTTATGGTGGGATCACAGAGACAGAATTTCAGCTGCTAAATACGAACTCGTGTTTGTCGCCAAAGTTGCCCCTCTGGGTGTGACCACGTACTTTGTGTCATCAGGCCTCGGAGCAAAACAGAGTGAATACTCCAGTATCACAGAATATAACACAAACAGAAATCCTGAAAAACCAAGGTGAGGGTTGAACAAAAGGGGTAcgtttctaaataaactgtgGTGCGGCGTCGGTGGGGAGAAGTATAAGATGATTTGGTCTTATCAACTGACAGAGTTAATAGTgaggctgacgtttcgagcgctagcccttcgtcaaagcaAAAGGCGAGGGCTGTTGCACTTATTTAAAGATCAAGTCATGATTGCtcaaattaagtttttatatttcattttacttaaCTTTGTATTGTGCAAAATTGGCTATGTCATAATTTGGCGACTATGCCGTGGACAAGGAACCAAAATGACCCTGGGCTCGAGATTGTTTCCCCGCCGAAAGAAGACTTCAGAGAAGGAATTTGCGCATCAAGTGAGGGAACCTGGTTCAGAAAGCATCTTCTTGGAAAATGACAATCTTAAAGTTGAATTTGATAGTCTTCGAGGTTTGTTGAAGaGCATTACACATAAGCAAGACGGATCAGTAACCAATGTTGCCATTGATTTTGTGTCGTATGGCACCACAGCGAGCAGGGATAGGAGTGGAGCGTATCTGTTTCTCCCTGACGGGCCTGCTCAGGCTCATGGCCTTGGAGAGCAGGTTACAGTGTATGTAAGCAAAGGCAAGTTGATGCAAGAAGTACGTGTTGCTCTTCCCAATGTGGTGCATGTAGTCAGACTGTACTCACTATCAGGACCTGAAGGACTAACTCTGGATATCCAGAACAAAGTAGACATACGAAATCAAATGAACAAGGAAttggtgatgagaataaaaagcGGTATTCGGAACGCTGGCCGAGAATATTACACTGATCTTAACGGATTTCAGATGCAAAAGCGCAAAACACTTGACAAGATTCCTATCCAAGCCAACTTTTACCCTCTCCCTTCCATGGCTTTCCTTCAAGATAAATCGACGCGTTTGACACTTCTGTCAGCTCAGTCCAATGGAGTAGCCGGTCTACACGAAGGTGAACTTCAAGTGGTTCTTGATCGCCGTTTGTACCAGGATGATAACAGAGGCTTGGGTCAGGGCGTGACTGACAACAAAGTTACCCCCGCTAACTTCAGGCTGGTTCTACAGCGATTCAAAAGTCCACATGAACCTGACGGTATTCCACTTGCCTACCCCTCCCTCGTTAGTCACAGATTGCTGCACCATCTTAATCACCCGCTGTTCACGTTAATAACTCCAGCTCAGCCCGCTGACTCCGAGAACCTGCTGTCGGTTTTCGAAAGTTTACAGTCCAGTCTACCCAGTGATGTCTTCATGGTCACCTTGCGCTCAATTGGAGATAAACAGCGGCCTCGACCCAGTGGCGAGGCTTTGTTGGTACTTCACCGTCTAGGATatgattgtaattttgaatGCAAGTGCCTCACAACGACAAGTAAAGGACAGGTGAAGTTAAACCATTTGTTCCAGGATCTGTCGATCGACAAACTCCAGTCGACTTCTCTGACGATGTTACATGACTACCAAGAATTGGATCCCAGCTCCCCTCTGAACGTAGAACCAATGGAACTTTATTCTTACAAGATGAGACTCAAATGATGACAGTTTATATATTAGTGGCTTATGCTATAAAATTTGAGATCTACCATAAATACTCAGGGCTGCTTGGTTCGAAAGCCGGCTAATCCAGGGAGAAAAGTTATACTTAGTTTAATTTCTCTTGTACAAAAGCGACTAGTATGCCAAAATTTTAGAGATTTTAACCTTGTGGCAAAACTTAtctcaacaaaatataaacagtGAAACTCTGCgaactgaagaaaaactcAGTTACTCCTAACTAAGTCTTACCTAATCGTGTTCTGAACAGCTCGACTCAGAGTTGTAACCGTCAAAGCTATTTATACAAGGACCTTCACTGACTACAGTATATGGATAATAACGTTAAGGGCTCGattcttgttttgattggttttaagCACGTGGAATGCCGCTAAGCAAAACgtgcaaaataataaaataaacgaATAACAGATAATTGTCCTGATGAGGAACTGCTAGCTTTGTAACAAACTTAATCGACCATTTTCATATCAGACCAAACACACTAACAAGaaacagttttgaattaaGTAATGGTATTCAACTCTAGCACCGTGAGGACAGCGAATGCATTCATAGAACAAGCGTATTAAGAGGAACGATCCTGTCTTTTCCATTCTAGCTGCTGTGGTCTCTGTCTATTTCACACCTCTCGACATAATACTAGAGAAGATAGACAGTTTACAATCTCTAGCACAAAAGTAATCTGCATTTAACAAAGGTAGCAAAACATTGAACAAGTAGACAAATGTATATGGAGCTATATTGTGAAAAGGATAGAATCTTTAACTCtcaatgaattttaatcaattgaattaaaaataaaaatcgacGTA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01074 all species →	Glyco_hydro_38N	Glycosyl hydrolases family 38 N-terminal domain	Domain	Interproscan
PF09261 all species →	Alpha-mann_mid	Alpha mannosidase middle domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000602 all species →	Domain	Glycoside hydrolase family 38, N-terminal domain	Interproscan
IPR037094 all species →	Homologous_superfamily	Glycoside hydrolase family 38, central domain superfamily	Interproscan
IPR050843 all species →	Family	Glycosyl Hydrolase Family 38	Interproscan
IPR015341 all species →	Domain	Glycoside hydrolase family 38, central domain	Interproscan
IPR011330 all species →	Homologous_superfamily	Glycoside hydrolase/deacetylase, beta/alpha-barrel	Interproscan
IPR027291 all species →	Homologous_superfamily	Glycoside hydrolase 38, N-terminal domain superfamily	Interproscan
IPR028995 all species →	Homologous_superfamily	Glycoside hydrolase families 57/38, central domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11607 all species →	ALPHA-MANNOSIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004559 all species →	Molecular Function	alpha-mannosidase activity	Interproscan
GO:0006013 all species →	Biological Process	mannose metabolic process	Interproscan
GO:0000139 all species →	Cellular Component	Golgi membrane	Interproscan
GO:0006491 all species →	Biological Process	N-glycan processing	Interproscan
GO:0006517 all species →	Biological Process	protein deglycosylation	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX46896.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.