Gene detail

Detailed information of RMX46928.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2530:1920...13482
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00022106

ATGTATCGTAGTCGCCACCCTAGGTCGAGCAGAAGTCTTGAGCAGGAGAAAATTATTGCCCAAACGTTTGTTAAGTTTCTGGAGGACAACAATCGTAAGGAAGACATGTTTGTAGACGAATTGAGGCAGATATACCAAGAAGAATTTCGCCGTCTGTACAGCACGCTGGGTATGTCATTCTCCAAAATTTTGAACACACTCACGTACCATATAAATGCTTGTCAGCAACTTCAAGATCGTGTTATCTTTGGTGGTGGAGAAGCCGCAGCTCTTCAACTCCTCACTGATGATCCTGATGATGATCTTTGTTACCGCTCGCCCTCGAGCTTGAGCCCTTTCTATTGTAATATATGTAAAAGAGATCTTGGAAATGATAGAGCTTACAGCAAACACATCGAAGGGGTGAAACATCGCCAACAGTACATCCTCATAACGATTCGAAAATCACTGAAAAAGCCAGAGCTTGTCTTTGACAAAAATGGGATAAGAGTTACTTCAGATCCCGCTGGAGATGAACATGGTGTGATTGAATTAAAAGTGGAGAGTGGAAAATACGGACAAATTGTGTTAATCATCGAGAACCTCAGTGAGGAGACCATCACCCTTGAGGATATAACCCTACTGTGGAGTGTGAACTTTTTTGATTACTCGGAAATATCCAGTATTGGGTCTTATGTGGGTCAGCTCCACCCAGGTTGTCAGAGGAGGTTCAGGATTGGCTGCAAACGTCGCCGGGAGTTTGGTTATTCGTATGTTCCCGGTGTGCTTACATTTCAGACCGAAGACGGGGTGGAGTTTCACATCCTTAGGTTTTTTTCTGTGCGCATCGTGAGTGACTTGTACGATGACTTGAAGCAGACCTCAGAGTATAAACCTCCCCAACGGGCAACAGAAATTCCCAGGGATGTTAAAACATTTGGAGGGATACCCCTTCCACGGTACAGTATGGCATTTTCTGCAGAAAACGAAGTAACTCAGAGTCTACAGAGGAATGGCTTAATTATGGAGAAGCTGGACTTTTACGACATCCCTTTAACTGTAAAAGCCCAGGTCATTAAAAGCAATCAAATCCGAGAAGGACTTTGTGAGCGACTGAAAAAGAAGTTGAGCTTTGACAATTACAAAGAGAAGTTCTCTCTGCTTCTTCACGTGGAAGAACTACAAATGCAGAAGGATATTAGAAACTATGATATGAAAGGAGTTGAATTTCAACAGGAAAGAGGAGACAGACGCTTTCTGATCTTAGAGGTACCCGGTCTTGCAGAAAATCGCCCGTCCGTGTTACGCAGTGACAAGATCTATGCCTACGAGCCAGGTGTATTACAGCGACGATACGAAGGAATCGTGCACAAAGTCCAAATGCTGGATGTGAAACTTGGCTTTAACATGAACGATATGCCTTATGTTAAGGGTAAGAAGTTCGACATCCAGTTCACTTTTCATCGACTTCCAGTACAGATGGAACATCGCGCGTGCGAGCAGATTGCGTCTGTGAACAGGCAAGACATGCGACACGTTCTCTTTCCATCAGATGACTGTCTCGATCAAAGGGGAGAAATTAACAAGGAGGTCCGTGAGCGACTGAAAAAGAATTTGAGCTTTGACAACTACAAAGAGAAGCTCTCTCTACTTCTTCACGTGGAAGAGCTACAAATGCAGAAGGATATCAGAAACTATGATATGAAAGGAGTTGTTTTTCAACAGGAAAGAGGAGACAGACGCTTTCTGATCTTAGAGGTACCTGGTCTTGCAGAAAATCGCCCGTCTGTATTACGCGGTGACAAGATCTATGCTTACGAGCCAGGTGTATTAAAGCAGAGATACGAAGGAATTGTGCACAAAGTCCAAATGCTGGATGTGAAACTTGGCTTTGACATGAACGAAAATGTGATGATAGGCTGGGAAGAGCTTCCGAATAAGAACTTCCCGATCATTTTCCATCCGGTGTTTGGTAAGGACGAGAGAGAAGGTAGCAGCCCTTCCTTCTTTAATGTGGCTGAGGTGGAAACTATTGAGCGATACCTGAGGAAACTGTTAGACGATAATGTGAGGAGCAGAGGACTAAAGCACTTAAAACCTGAGATGATTGGGGTGATATCTCCTTACAAAAGACAAGTGCAAAAGATCCAGAAAATGATTGAAAAAAGACGCTTTGGTGGCGAAATCAAAGTTGGCAGCGTGGAAGAGTTCCAGGGGCAAGAAAGAAGAGTAATCATCTTGTCAACAGTTAGGAGCACCAAGAAAGAATATCTGGAGATGGACAAGGACTTCCGCCTCGGATTCCTCAACAATCCCAAG

Transcript

rna-pdam_00022106

GACGTCATAGCCCAGCAATACTGAGAAATCGACcaaatcaacagaaaaaccGGCTGTATAAAATTGTGCTTAGTTCTCGTAATATTCAGTGGAAGAGATCGAAGGCATATAAAGCTTGAAGACATATTCCACTATGTATCGTAGTCGCCACCCTAGGTCGAGCAGAAGTCTTGAGCAGGAGAAAATTATTGCCCAAACGTTTGTTAAGTTTCTGGAGGACAACAATCGTAAGGAAGACATGTTTGTAGACGAATTGAGGCAGATATACCAAGAAGAATTTCGCCGTCTGTACAGCACGCTGGGTATGTCAttctccaaaattttgaacacaCTCACGTACCATATAAATGCTTGTCAGCAACTTCAAGATCGTGTTATCTTTGGTGGTGGAGAAGCCGCAGCTCTTCAACTCCTCACTGATGATCCTGATGATGATCTTTGTTACCGCTCGCCCTCGAGCTTGAGCCCTTTCTATTGTAATATATGTAAAAGAGATCTTGGAAATGATAGAGCTTACAGCAAACACATCGAAGGGGTGAAACATCGCCAACAGTACATCCTCATAACGATTcgaaaatcactgaaaaaGCCAGAGCTTGTCTTTGACAAAAATGGGATAAGAGTTACTTCAGATCCCGCTGGAGATGAACATGGTGTGATTGAATTAAAAGTGGAGAGTGGAAAATACGGACAAATTGTGTTAATCATCGAGAACCTCAGTGAGGAGACCATCACCCTTGAGGATATAACCCTACTGTGGAGTGTGAACTTTTTTGATTACTCGGAAATATCCAGTATTGGGTCTTATGTGGGTCAGCTCCACCCAGGTTGTCAGAGGAGGTTCAGGATTGGCTGCAAACGTCGCCGGGAGTTTGGTTATTCGTATGTTCCCGGTGTGCTTACATTTCAGACCGAAGACGGGGTGGAGTTTCACATCCTTAGGTTTTTTTCTGTGCGCATCGTGAGTGACTTGTACGATGACTTGAAGCAGACCTCAGAGTATAAACCTCCCCAACGGGCAACAGAAATTCCCAGGGATGTTAAAACATTTGGAGGGATACCCCTTCCACGGTACAGTATGGCATTTTCTGCAGAAAACGAAGTAACTCAGAGTCTACAGAGGAATGGCTTAATTATGGAGAAGCTGGACTTTTACGACATCCCTTTAACTGTAAAAGCCCAGGTCATTAAAAGCAATCAAATCCGAGAAGGACTTTGTGAGCGACTGAAAAAGAAGTTGAGCTTTGACAATTACAAAGAGAAGTTCTCTCTGCTTCTTCACGTGGAAGAACTACAAATGCAGAAGGATATTAGAAACTATGATATGAAAGGAGTTGAATTTCAACAGGAAAGAGGAGACAGACGCTTTCTGATCTTAGAGGTACCCGGTCTTGCAGAAAATCGCCCGTCCGTGTTACGCAGTGACAAGATCTATGCCTACGAGCCAGGTGTATTACAGCGACGATACGAAGGAATCGTGCACAAAGTCCAAATGCTGGATGTGAAACTTGGCTTTAACATGAACGATATGCCTTATGTTAAGGGTAAGAAGTTCGACATCCAGTTCACTTTTCATCGACTTCCAGTACAGATGGAACATCGCGCGTGCGAGCAGATTGCGTCTGTGAACAGGCAAGACATGCGACACGTTCTCTTTCCATCAGATGACTGTCTCGATCAAAGGGGAGAAATTAACAAGGAGGTCCGTGAGCgactgaaaaagaatttgagcTTTGACAACTACAAAGAGAAGCTCTCTCTACTTCTTCACGTGGAAGAGCTACAAATGCAGAAGGATATCAGAAACTATGATATGAAAggagttgtttttcaacaggaAAGAGGAGACAGACGCTTTCTGATCTTAGAGGTACCTGGTCTTGCAGAAAATCGCCCGTCTGTATTACGCGGTGACAAGATCTATGCTTACGAGCCAGGTGTATTAAAGCAGAGATACGAAGGAATTGTGCACAAAGTCCAAATGCTGGATGTGAAACTTGGCTTTGACATGAACGAAAATGTGATGATAGGCTGGGAAGAGCTTCCGAATAAGAACTTCCCGATCATTTTCCATCCGGTGTTTGGTAAGGACGAGAGAGAAGGTAGCAGCCCTTCCTTCTTTAATGTGGCTGAGGTGGAAACTATTGAGCGATACCTGAGGAAACTGTTAGACGATAATGTGAGGAGCAGAGGACTAAAGCACTTAAAACCTGAGATGATTGGGGTGATATCTCCTTACAAAAGACAAGTGCAAAAGATCcagaaaatgattgaaaaaagacGCTTTGGTGGCGAAATCAAAGTTGGCAGCGTGGAAGAGTTCCAGGGGCAAGAAAGAAGAGTAATCATCTTGTCAACAGTTAGGAGCACCAAGAAAGAATATCTGGAGATGGACAAGGACTTCCGCCTCGGATTCCTCAACAATCCCAAG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21632 all species →	MOV-10_N	Helicase MOV-10, N-terminal	Domain	Interproscan
PF21634 all species →	MOV-10_beta-barrel	Helicase MOV-10, beta-barrel domain	Domain	Interproscan
PF21633 all species →	MOV-10_Ig-like	Helicase MOV-10, Ig-like domain	Domain	Interproscan
PF21635 all species →	Mov-10_helical	Helicase MOV-10, helical domain	Domain	Interproscan
PF13087 all species →	AAA_12	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR045055 all species →	Family	DNA2/NAM7-like helicase	Interproscan
IPR047187 all species →	Domain	Upf1-like, C-terminal helicase domain	Interproscan
IPR049075 all species →	Domain	Helicase MOV-10, N-terminal	Interproscan
IPR049080 all species →	Domain	Helicase MOV-10-like, beta-barrel domain	Interproscan
IPR049077 all species →	Domain	Helicase MOV-10, Ig-like domain	Interproscan
IPR049079 all species →	Domain	Helicase MOV-10, helical domain	Interproscan
IPR041679 all species →	Domain	DNA2/NAM7 helicase-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10887 all species →	DNA2/NAM7 HELICASE FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0035194 all species →	Biological Process	regulatory ncRNA-mediated post-transcriptional gene silencing	Interproscan
GO:0043186 all species →	Cellular Component	P granule	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX46928.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.