Gene detail

Detailed information of RMX46977.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2522:37761...53548
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00011920

ATGGGGCTTAAGCCTCTTGAGTTCGAAGATTGCATTTTGGATAGTCCGTATTTCCGTGAGAACATCCACGAACATGAACGAGAGCTGGAAAGAACGAACGAGGCCATCAAGGGCCTCATCAAAGAATGTAAGACTTTGTTGAAGGCGATCGAAAATTTATCCAAAGCACAACGTAGCTTTGCAAATGTGCTGAATGGCTTTGGGTTGGAATGCATTGGTGAAGTAGAGACTGATGATGAGATGATTATTGCTGATTCACTGAAGGAATTTGCTAACATGATTGTTAGTGTTGAAGATGAACGAGAAAGAATGTTAAACCATGCAAATTCACAGCTGATAGTACCGCTAGAGAGATTCAGGAGAGAGCAGATTGGAGGAGCAAAGGAGGAAAAAAAGAAATTTGACAAGCAGACAGAAAAATATTGTTTAACAGTTCAGAACTACTTGAATCTTTCTTACAAGAAGAAAGAAACCATTCTGAGTGAGGCGGATCAACTACTTCAATCAGAGAAGCGTCTTTTCCATCAGTCTGCCCTTGATTATGTTGTCAAACTTCAAGAGGTCAATGAGAAGAAGAAGTTTGAATTTGTTGAAACTATTTTATCCTTTATGTATGGGCATCAAACATTTTTTCACAGCGGGCATGAAGTATTTAATGACTACGTTGAGTACATGAAAGATCTTCAACTGAAACTTCAAAATAAAGCTCAAAGTGGTGAGCTACAGTATCGTGGTGCACACACAAGGCAAGGATATCTGGCGGTGCAGAAGAAAGGAAGCCTCGGTACCAATACTTGGCACAAACATTACTGTATGTACACAAAGGAAAACAAGATTCTCACCATGATTCCATACACACAGACTCAGGGACGACTGAATGCATCAACTGACACAATGGTTGTAACATCTTGCATCAGAAGAATGACAGATTCTATAGACAGAAGATTTACATTTGAAATTACTGCCGAGGAAAGATCACAACCTATCTTATTGCAAGCACAGGGAGAGGATGATAGAAAATCTTGGTTGGAAGCCATGGATGGCAAAGAACCTTTGTATGAGGATTTCAATAACCTACCCAAGCTGAAAGATGAGGAAACACGTGATCTTGAACTCACTTTTATCACCAAGTGTATTTCGGCAGTGGAAAAACGAGGTATAACAGACCAAGGTCTTTACAGAATAGTTGGTGTGGGTTCCAAGGTCCAGAATCTTTTGTTACAATGTATTGAAAGGAAGAAGGCAAAGACAGTTGACCTTGCAGACCAGGAATGTGAATGGGAAGTCAAAACCATTACCAGTGCACTTAAACAGTACTTGAGGAACATGCCGGAGCCTTTGTTTACATACAACTACCATGAACAATTCCTGGAAGCTGTTAAAAAAGATACATTCGAGAAACGAGTTGAGGCCTTGAAGTGCCTTGTGGCCGAATTACCTGAAGAAAACAGGAAGGTTGCGGCTCATTCCAATAGGAACTTAATGGCGGCAAGCAACCTTGGTGTTGTGTTTGGTCCAACATTGATGAAATCTAGAGAGGAATCTATGGCTGCGATCATGAATTTGAAATACCAGAGTATTGTTATTGAGCTGCTCATCAAAGAGTTTAACACAATTTTTGGGCCTGATCCTAGTCCGGATTTAGGGGAAGATTCTACTGATTCCTCTCCAATTGTAGTAGAGAACAACACAGGGAATCCCTTCTTAGAAGAAAAAGAGAATGATTCTACGCACGTCTACGAAAAGCCCAAACCTCTCCCTAAGAAGAGAAACAGTGATGATACTGGTGCTAAAATAAATGAAGCCAAACCTGTTACACCCTCCAAGCCTCTACCCCTCCCCACTAAAGGCTACCGTGCCCCACCCCCTCCGAACAAACCAGCTCCGTATGCGAGGCCGAAAGTCAGAGCCATTGTTGCGACAGATTCCGAGGACGATCTTGGCAGTTTGTCTGAGTCTTCAAGTGCAAATTCAACCCCTCAGAGTGAAGGGAAAGGGCCGTTATCTCCAAGGGATTTTTGGAGAGAAAAAACTGCAAATAAACCAGTACCTCCTCCGAAGAAACCTGAAGTAGTCGCTGAGTTTAAGAGCAGATTTGAAGGCTCTTCAAGACCTTTTTCTATGGTTGATCCCATAAACGATAAGGCAAAGGAGAAGTCTTCTGGTATTCGCCGTGCTAGCAGTCAAGGGGGAAGCCTTAACAGGGGAGTGCAGTCTTGGGGGACGGGGCCTCCCCCTCTCCCTAAGGAACCCCCGCCGGTAGATGAACCGAAGCCATCTCCAGCTACCAAAACACCGAAGAAAGTCAGGACGATATATCCCTGTGTAGCGGAGAACAGTTCGGAGCTTTCGTTTGATGCTGGCACATGCGCCCTTCGAAAGAACCTGGCTGGCTTGAAGGTACACTGA

Transcript

rna-pdam_00011920

GTAATCAGATTCGAACCTTGAAGCAGAGAAATTGTAGCCGATCCTGCGAGTTGTTTATATCTACGGAATAAGGCATTCCTTGAAACCGACACGAGAATTCAGGAAGAAGGTATCATCCATCTTAAGCAATGGGGCTTAAGCCTCTTGAGTTCGAAGATTGCATTTTGGATAGTCCGTATTTCCGTGAGAACATCCACGAACATGAACGAGAGCTGGAAAGAACGAACGAGGCCATCAAGGGCCTCATCAAAGAATGTAAGACTTTGTTGAAGGCGATCGAAAATTTATCCAAAGCACAACGTAGCTTTGCAAATGTGCTGAATGGCTTTGGGTTGGAATGCATTGGTGAAGTAGAGACTGATGATGAGATGATTATTGCTGATTCACTGAAGGAATTTGCTAACATGATTGTTAGTGTTGAAGATGAACGAGAAAGAATGTTAAACCATGCAAATTCACAGCTGATAGTACCGCTAGAGAGATTCAGGAGAGAGCAGATTGGAGGAGCAAAGgaggaaaaaaagaaatttgacaagcagacagaaaaatattgtttaacaGTTCAGAACTACTTGAATCTTTCttacaagaagaaagaaaccatTCTGAGTGAGgCGGATCAACTACTTCAATCAGAGAAGCGTCTTTTCCATCAGTCTGCCCTTGATTATGTTGTCAAACTTCAAGAGGTCAATGAGAAGAAGAAGTTTGAATTTGTTGAAACTATTTTATCCTTTATGTATGGgcatcaaacattttttcacagCGGGCATGAAGTATTTAATGACTACGTTGAGTACATGAAAGATCTTCAACTGAAACTTCAAAATAAAGCTCAAAGTGGTGAGCTACAGTATCGTGGTGCACACACAAGGCAAGGATATCTGGCGGTGCAGAAGAAAGGAAGCCTCGGTACCAATACTTGGCACAAACATTACTGTATGtacacaaaggaaaacaagattCTCACCATGATTCCATACACACAGACTCAGGGACGACTGaATGCATCAACTGACACAATGGTTGTAACATCTTGCATCAGAAGAATGACAGATTCTATAGACAGAAgatttacatttgaaattacTGCCGAGGAAAGATCACAACCTATCTTATTGCAAGCACAGGGAGAGGATGATAGAAAATCTTGGTTGGAAGCCATGGATGGCAAAGAACCTttgTATGAGGATTTCAATAACCTACCCAAGCtgaaagatgAGGAAACACGTGATCTTGAACTCACTTTTATCACCAAGTGTATTTCGGCAGTGGAAAAACGAGGTATAACAGACCAAGGTCTTTACAGAATAGTTGGTGTGGGTTCCAAGGTCCAGAATCTTTTGTTACAATGTATTGAAAGGAAGAAGGCAAAGACAGTTGACCTTGCAGACCAGGAATGTGAATGGGAAGTCAAAACCATTACCAGTGCACTTAAACAGTACTTGAGGAACATGCCGGAGCCTTTGTTTACATACAACTACCATGAACAATTCCTGGAAGCTGTTAaaaaagaTACATTCGAGAAACGAGTTGAGGCCTTGAAGTGCCTTGTGGCCGAATTACCTGAAGAAAACAGGAAGGTTGCGGCTCATTCCAATAGGAACTTAATGGCGGCAAGCAACCTTGGTGTTGTGTTTGGTCCAACATTGATGAAATCTAGAGAGGAATCTATGGCTGCGATCATGAATTTGAAATACCAGAGTATTGTTATTGAGCTGCTCATCAAAGAGTTTAACACAATTTTTGGGCCTGATCCTAGTCCGGATTTAGGGGAAGATTCTACTGATTCCTCTCCAATTGTAGTAGAGAACAACACAGGGAATCCCTTcttagaagaaaaagagaatgatTCTACGCACGTCTACGAAAAGCCCAAACCTCTCCCTAAGAAGAGAAACAGTGATGATACTGGTGCTAAAATAAATGAAGCCAAACCTGTTACACCCTCCAAGCCTCTACCCCTCCCCACTAAAGGCTACCGTGCCCCACCCCCTCCGAACAAACCAGCTCCGTATGCGAGGCCGAAAGTCAGAGCCATTGTTGCGACAGATTCCGAGGACGATCTTGGCAGTTTGTCTGAGTCTTCAAGTGCAAATTCAACCCCTCAGAGTGAAGGGAAAGGGCCGTTATCTCCAAGGGATTTTTGGAGAGAAAAAACTGcaAATAAACCAGTACCTCCTCCGAAGAAACCTGAAGTAGTcGCTGAGTTTAAGAGCAGATTTGAAGGCTCTTCAAGACCTTTTTCTATGGTTGATCCCATAAACGATAAGGCAAAGGAGAAGTCTTCTGGTATTCGCCGTGCTAGCAGTCAAGGGGGAAGCCTTAACAGGGGAGTGCAGTCTTGGGGGACGGGGCCTCCCCCTCTCCCTAAGGAACCCCCGCCGGTAGATGAACCGAAGCCATCTCCAGCTACCAAAACACCGAAGAAAGTCAGGACGATATATCCCTGTGTAGCGGAGAACAGTTCGGAGCTTTCGTTTGATGCTGGCACAtGCGCCCTTCGAAAGAACCTGGCTGGCTTGAAGGTACACTGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002561 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00620 all species →	RhoGAP	RhoGAP domain	Domain	Interproscan
PF16746 all species →	BAR_3	BAR domain of APPL family	Domain	Interproscan
PF00169 all species →	PH	PH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR047234 all species →	Family	GRAF family	Interproscan
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR047225 all species →	Domain	GRAF, PH domain	Interproscan
IPR000198 all species →	Domain	Rho GTPase-activating protein domain	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan
IPR004148 all species →	Domain	BAR domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12552 all species →	OLIGOPHRENIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20071	ARHGAP26, GRAF; Rho GTPase-activating protein 26	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.