Gene detail

Detailed information of RMX47047.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2518:318919...328411
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00009627

GTGAAATTCACGAACGAAAATTTGTGGGAAAGAGTGAGGTCGATTGGTTAGTGAGTTCTTGGTAGGGAGGTATTCTGAACACGCAATGAAAGAGATAAAAGTCAGCGAACATTCGTTACATTATGTTTCCTCTTACACCACGTGCTTGGCTCATTGAATTGATCGACCAAGCGCCCTTGTCCTTAATAATTGAAAGCATTGGTCTTCATTTTGGAGAAGTTTTGGGGTTTACTTAAATCTTGTCGGCCAACCCGAGCTTTTGATTATTGAGCGGTCTACGAAAACCATTTCATCGAAGAAAAACCTGGAATCAAACAAACACGAGTTTTTTGTTAGCGTTCTCACTCTTCAACCGGCATCATGACGAGTCTGTGGATGGGAGATCTTGATAGTTACATGGAAGAAGCCTTCATCACAAGTGCTTTTGCGGCGATGGGAGAAGCTGTGGTGTCCGTAAAGATGATAAAGAACAGAACAACAGGGACTGAATACAGAATGAAGTTTGAGGCTATGCGGAAATCTTTCCCCAAACGGAATCACAAAATTATCTTCAGTGGTCTTCAAAGCTTGAGGGCATTGACTCCAGCTGGTTactgttttgttgattttggTGATTATACAGTATCACAGAAAGTTATGGGAAAACTGAATGGATTGCCAATTCCTGGAAGCAATCCAaTAAAGCGTTTCAAATTGAACTGGGCTACCTACGGCAAGGACTCATTCACCCAGGGGCCAGAGTATTCAATATTTGTTGGTGATTTATCTCCTGATGTTGCCGACCATGTTCTGCAGGTAAAATATAGTCACATAAGGAGTTCTTCCAGAGAAAATTTCCCAGTTGTAAAGCTGCCAAAGCATATAATGAAGTTATTATTCACTTCAGTGTTGGTAGAAGTGATGGATATATTCCGTGTGGCTCTGCAGCTCGATAAATTTCCATCACCATTCACTTACAGTTCTGCAAATAATTttgTTTTGGATGCAGCAGGAAATTCAAGAGGATATGGATTTGTGAGattttcagatgaaaatgaacacaGAAAGGCCATGATAGAGATGCAGGGAGCAGTGGGGTGTGGTTCAAAACCTCTCCGTGTCAGTGCTGCAACACCCAAAAGGAAAACTGCATGTGTGCAGATCATTAAATGCAAACTCACTGAACTTGAGTTGAGGatacagttgaaaaaaattaatttattttggtttatcAGGCCTCAAAATACTCCAGgaaacacaacaacaacatatgGCTCTGCTAGTGCTGCCAATCAGCAATACATGCAGCAGTATCAGCAATACCAGCAATATCTGGCAGCATGGCAGGGATACCAGCATCAACATCAGCAGCAACTCCAGCAACAGCAGTATTACCAACACTATCAGCATTATCAGCCTTATGGACAGACTACTTACCAACAGCCAATGGTATGTTTTACAAAGAGCAAAGAGTGTGTTTTACCTTCTAATaatgtacagaaaaaaattaagtgctTTAGTTATGAAGAAACCATAACAGTTGATAACACAGCAGAAGATCCCAACCCACCACTGGACATCActgcagaaaataaaaatataatgtcAACAGAGGAAGAGTTATACCATGAATTGGAGCAATCAAGATGGCAGCCAGTAGAGACACTAAATTCAGGACACAAATCTCTTGTGACATAGATGATGAAACTTTTAGTGTTATAATCTTGGATTCTTAACTGACCCAGTTGTTAAAGATACTTTGACGCTTCAATTTATAGTCAAATGCCCGTTGATTCTTCTACTTAAGTTTTAGTCAgcatattaaaattttaaaatattggaGACTTATTCATTGTTGAGAACacttaaattgattttatttccaaagttttgtttggGGCCTCTCTGTTAAGGTATTGCTATGGTTATGGTTCGAGGTTTCTTGTCAGgataaaactttatttattttttttgtttgttttcagttggtATTGTTTTGTATAGCAATATGTTTTACTAatgggaaaataaattacaacaaGGATATTGTTGAACTGCAACCTGAGAATCTGAAGGATATTACGGTAGACTTTCTGTTAGTTAACCCTCTAACCCCGaagaatgactagcatctaaattctccttacaacaccagcactgaatcac

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF17654 all species →	Trnau1ap	Selenocysteine tRNA 1 associated proteins	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR041085 all species →	Domain	tRNA selenocysteine 1-associated protein 1, C-terminal	Interproscan
IPR040434 all species →	Family	tRNA selenocysteine 1-associated protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37457 all species →	TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0000049 all species →	Molecular Function	tRNA binding	Interproscan
GO:0001514 all species →	Biological Process	selenocysteine incorporation	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX47047.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.