Gene detail

Detailed information of RMX47191.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2478:44364...51786
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00018536

GGGAACATGTGTGGTCGAATTGTAGTGAAAGTCGGCTCTAATATGCTGTTTCAGGCGGGAAAACCAAGCTGACATTCACGTTTTATTGAAATTACACCTATGGTTGTCCCTATGGATGGTTCTGCTACTTGGAATGGCGAGGTGAAAAGCAACTCCGTTGATTGTAGGATTATAAAAGACGAGTCCGAAAAAATCGACCGGAGCTTGTTAGATATACCTTCGTCAATTCCAAACTCTTGCATCTACCGATACAATGACTTTATATGCTCCAAAATCGCTGATGGATTTTACGGAGATGTGTACAAGGTAAGGCACCGCGAAACAGAGGAAGTTATggtcttgaaaatgaacaaaccTGACGTGGAAAAAGATGATTGTACGATGCTGGATGAAATCAAGTTAATGTGTCATCTTTCTCACGAGAATGTTATCAGATTTCTTGGAATTTGCGTTGATGATAGTAGAGTGCATCTTCTTTGCGAgtttgtTAATGGAGGTGACCTCGAAGgacttttattaaaacattCAATTCATCTTGAATGGTGGACGAGACTATACCTTGCAAGAGATATCGCTGAAGGAATGAGGTACCTCCACAAAAATGGCAATTGCTTGATAAAAGAGAGAAACGGATGGAGATATGCTATCGTGGCAGATTTGGGATTAGCTACTGACATCAAGGAACAGTCAATTGTTGGATCTCCTTTTAACATGGCTCCAGAACTTTTACGCGGTGAATGTTACGATGACAAGGCTGATGTGTTTTCTTATGGAATTATTTTATGTGAAATAATTGGACGGGTACAAGCTGACCCTGACGAGCTGCCTCGAACACATtcATTTGGTCTGGATGTGGAGAAGTTCCAGTTGATGACAGGAGACTGTCCTCATGAGTTTCTTCAGACTGCACTCTGTTGTTGCcagATGAGCCCCACAGCCAGACCGACGTTCGAAGAAACAACCAAACACCTAGAATTCATTCTTGGTGAATACCGTCGTCGACCTGAATTTGACGAAGCGATCAATGTGAATCCTCCGGAAACAACTCCATCAACGGAGAAAACATGTCCaccatttaaagaaatacaacATGAAAATGGAACTGCGGCTGTGGCAGACTGTGCAACCTCGCCGGAATCATCACCTCCGGCTATCATCGTGAGCACCGACGAAACATCTCCGGTGACGATTCGGTCACACGAGAAACGCCGACACTCGTGGATCGCCGGCCGATATAAACTGTTCAACACGGCTACCGatgatttgttgaaaaacacTCCGGGTAAATTGAAGAGTTTCTTTCATCGGGTCCTTCGTGTCCAGACTCACTACGACCCGtcgaaacagaaaaaaagcaaagagtgCTTCAAAAGTCGATCTGTTTCGcagttaaaaagtttcaatgtGATTACCTCTGATGACGAAAATGTCCCTAATCTTGAGCAAGCGAGCATCCCAAATTCAGATGCGAGGAGGTGTCTTCGAAGGAGGAGCTCAGAACAAGATAACTCGTGCGAATTGGGATCTCAAGTAGATTCGGTAGACGGAGAAATCTCCCCTCGCAGTCCCTGCTGGGAAAGTGCTCTTTCTGTAACTTCGCCATTAAGTCAACCGGTGTCTCCGAAGACGGCCGAGGCCGCTCGGTCGCCTCCGAATGTACAGAATCCCACCAAGACCGACACAACTTTGTCCAAACTGTGCGTTAAGTTGGACAGACCGAGATGCGATTCAACACCATACTTTCACGACTCGAGTTCGGAACCGAAATCGAGACGCTCGGCTTCCCACAGGGATTGCCAAACGAACAATGTCGATCATTCATCGTTAGTTACGCAAGGTGACGTAGCGGGAAAGATGAAAGACAAGAAGTCACCACTAtggttttggaaaagaaaaggaagcaAATTCAAAGATGCGGAGTAGGGGAGTGTTGAATTTTCCAGATATTTCCCCTAGTGAATGGTCAATTGTAAATTCGTCCGACTGCCATTTCTAAAGTCgaagtaaattttactttctatGAGGAATAAGAGGTTTGTGTGAGAAGGGgcacttttcaattgagtgtctaAAATATCCCAAATTTCATAAGGTTTCCTGACTCTTTACCGTCTGTGATTAGCGTAAAAACCTCGCGCCACTCGgttctcaaccaatcagcttcaaaactaaaaccaatcgcgaccTTGTATCTCGTGTGTTCCCGCGCTAAAGACTTTaagtgcttttattttaagatttcatGGGCGCGTTGTGATAATTACctctgttctgattggctgtcgTGATTTTTCTGCTCTTGGTCTTTTGGCACTCAATCGTGAGGCGTTCTGGTTTCTTTTAAGCTATTCTTTCTCCGTTCTGCCCTTGTAGAGCGATCTTTACTGATGTCCTGATAATTTATCAAGTTTAGAATGAAGAGTAGGCATCATACAAATTCCGCCAAGAACATCTGATCTTTAAgactaaaaaattgttgttaagaaagattttttggttgttgttgttaaaaatTGTCGAGGTGTTCTTGTAAACAGTAACATTAGCAAAGGTCGCACAGtcttaacttttaaattaacataaaaccaaacatttccaaatttttttttgtcgccTAGTCACTGTCGTAAACTATTTAACAAAGGCAATCGCCAAGTTCGAcggagaattttgaatttagtgtCGAAAATAATCAGGTATTGCATTGGTAttgatttcttattttccctgtgattggtcaaaaaaatcTTGCGCCcctttctgaaccaatcagatgcaaa

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07714 all species →	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050940 all species →	Family	Actin-regulating Serine/Threonine Kinase	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR001245 all species →	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46485 all species →	LIM DOMAIN KINASE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08842	TESK2; testis-specific kinase 2	EC:2.7.12.1	Protein kinases	ko01001	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.