Gene detail

Detailed information of RMX47221.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2468:61755...72292
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00021940

ATACGTCAGCGGAATACGAAGAGAAACTGATTATTTTCACGAGGAACTAGAGTCTCTTTGAGAGAAATCCAATTTCGGCCTTAGTTATGGTCAAGGAGACGACACTTTACGAAACTCTTGGCGTAGATCCGTCTGCTACCCCTAGTGAAATTAAGAAAGCTTATCGTAAACTCGCCTTGAAGTATCATCCGGATAAAAATCCAGATGCCGGCGACAAAtTTAAGCAGATTTCCCATGCCTATGAAGTATTGTccgatgaaaagaaaagaagcatttATGATGAAGGAGGAGAAGAAGCTCTTAATGGTGGTCCGGACATCGGTGGGTTCCATTCCCCAATGGATATTTTTGACATGTTCTTTGGCACAGGGCATGGACATTCCAGAGCACGTCAAGAACGTAAAGGAAAGGATATGATACACCAGCTCAAGGTGTCCTTGGAAGACATGTACAATGGTTCTACAAGACAACTTgctttgcaaaaaaatgtcATCTGTAGCAAGTGCGAGGGAAGAGGAGGAAAGAAGGGTTCAGTTGTAAGTTGTAATACTTGTCATGGCAGTGGGACCAGGATCAGGATcaatcaaattgcactcgGGATGGTTCAGCAAATTCAAACACAATGTAGGGACTGCGGTGGAACAGGAGAGAGAATAGCAGGAATGTCAGTAGAGTTGTAGAGTCATTTTGCTTTGTTGtgtgctgttgttgttgttgttgttttttttttttccctgagaTATGGAACTATTACACACAGTAAATCATTCAACAAATTAGTAATAACCATTGCAATGTGTTCTTTCTGTAGAAAAGGATCGTTGCAAGAACTGTCAGGGTAAAAAGACAATCAAAGAACGTAAAATCCTGGAGGTGCATATCGACAAAGGAATGAAAGATGGTCAAAAGATCACATTTTCCTCAGAGGGAGACCAGGAACCTGGTATTGAACCAGGTGACATCATTATCATTCTTGATGAAAAGCCTCATCCAGTTTTCCGGCGAGATGACATGGACCTGCATATGAAAATGACAGCGAAATCGAGCTGGTTGAGGCACTCTGTGGCTTTCAGAAAACGATAGAAATGTTGGATAAGAGGCAACTGCTCGTTACGTCTCATCCTACAGAGATAATAAAACCTGGCAAACAACCTGTTGTCTTCATTTCAGGCGAAGTGAAATGTGTTCGAGATGAAGGAATGCCAAAATTCAAGAGCCCATACGAGAGAGGATTTCTCATCATAACTTTTTCGATAAACTTCCCTCCGGATGGATTTCTTTCTGCTGGTGAAATCCCTAAACTAGAGCAGCTGCTACCTCCCAGAGACGAAAGTATTGTTCCTGAGGATGCAGAAGAAGTCGACCTTGTAAAAATCGATCCTCAGGAGCAAGCAAGAAGTCGTATGCACCATGGGGGCTTTCATGACGATGATGAAGACTATGGCCCACCAAGAGGAGGGGTGCAGTGTCAGTCACAGTAAATTTTAACTCAAAATTGTTCTCCAGTACACGCTTCAATATGATATTCCTctgatttaataaaaatgaaaactttctcTTCTCTTGCTTTAGGCTATATGTAAGTAAGTAGTGTAACAGTGACCCGGACTAAAAAATTGATACGTCTGATTAATTTAATATTCACCGACATGCATTTTACGCTCTGTTTCgattattttgtgttttttcatagtgatcattttcctctttgaaaagtgaaatggtTTGTTTTCCAACATGGCTTAAAAATGGGTTGCTTTGTACATTTctgtttgcatttgttttatgCCGGCCAGGCTTACAGCTGTCCGAATAGAACGCAGGAGATACGCTCGAAGGAGGAGTCTGACCCCTTCCTGCGTGCCTTCTTGTTCGAAATATAACCCAGGCTCTCTCGTGCATATACCTTCGTGTTTCCGCATGTCAGTCCAAATCACTCGCGACAGCCTTAAATTGGGAAGGTGCTGACgaaactaattttattttttagttcatttcCCGCCTTTCTCAGTTTGGAAGGGTATTCTTCCTTAAATTTGAGGGCTTTTACATAACTTTTGTTCCTATATAATACAATAATCACTAAAAAGTAAATGAGGATTCACATCGTTTTTCAGatatgtttttcctttttttctttcaaacttgcTCGTAACTTTCATGTTAGTATTAAAGGAGCAATGATGATCAGATTGAGGTAACTCCTAATTCAGGCGAGGTCATTTTTTGGCCTTTGTTTTGGATACTGGATCCTCGAACATCTTTGAAAGATAtcgagaaaaatcatttaaatctgattttttGATGCACTATGTTGAGTTCTGCTTAGAGTAgtttaggaaataaaatttcattttccaagtAGTTAtatgtattatttatttagatTACTGTCgtaaatagaaatttaaaaaggcgAGGTTTCCTTAAAATGGTTGTTGCATGGGGCACCTTTCGGCGTGTACTTTGtaatatatgaaataaaaataaagtcagttttgaaataacaaa

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00684 all species →	DnaJ_CXXCXGXG	DnaJ central domain	Domain	Interproscan
PF00226 all species →	DnaJ	DnaJ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001305 all species →	Domain	Heat shock protein DnaJ, cysteine-rich domain	Interproscan
IPR044713 all species →	Family	DnaJ homolog subfamily A member 1/2-like	Interproscan
IPR001623 all species →	Domain	DnaJ domain	Interproscan
IPR018253 all species →	Conserved_site	DnaJ domain, conserved site	Interproscan
IPR036869 all species →	Homologous_superfamily	Chaperone J-domain superfamily	Interproscan
IPR036410 all species →	Homologous_superfamily	Heat shock protein DnaJ, cysteine-rich domain superfamily	Interproscan
IPR008971 all species →	Homologous_superfamily	HSP40/DnaJ peptide-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43888 all species →	DNAJ-LIKE-2, ISOFORM A-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0031072 all species →	Molecular Function	heat shock protein binding	Interproscan
GO:0051082 all species →	Molecular Function	unfolded protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0030544 all species →	Molecular Function	Hsp70 protein binding	Interproscan
GO:0042026 all species →	Biological Process	protein refolding	Interproscan
GO:0051087 all species →	Molecular Function	protein-folding chaperone binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03686	dnaJ; molecular chaperone DnaJ	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.