Gene detail

Detailed information of RMX47437.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2422:744500...754945
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00002160

ATGAACGGGCCAGTTAAAAGGCGAGGAGGAGTTTCGCTTCTTCAAGATAGCTCCTTTTTAAATCAAGGGTTTCAACAACACTTTGATGAAGAATACCCATCAACGTTACAAGCGACAAATTACCTATCAAGGAGGCAAATGCATGCTGAACGCATATCTTGGGAAGAAATTCAAGAAAATCCTCGGGACTATAAAAATCCAATTTTGTTCTCAGAACCAGGACAAAGAGTCATTCGAGCAATAAGACAATTTTATGGGGCGAGACAAGGAGCTATTAGCCATTCTTGTGCGCCAAAACAAGGTTGTTCTTCTCCAAAGGAGAAAAATGTCAATTCTGAGAGCGGAAACGATGAGCGTAAAAATAAAAGGAAGGCACAACAAAGTCCTATTACAAACTACTTCAAAGAAAGGAAAACTTTGCAAGTAAAGGAGGCCGTGAAAGTTAAACCAGCCAATGCAAACAGAGATGCCTCCTGGGAGGATCAAACAAGTGTTGTTACAGTCTCAACGATGAATCTAACACAAAGAGAGGAATTCCGACAATGCCTTGAATCAGCAGAAGAAGTTGCTTGCACCTTAATTTATGAAGACGGGTCGTCACTGCTAAGATCAAGGAAACATCAAAAAACAAAGAAACAAGTAGAAGACGTGTGTGGCGAAAAGCGAAACTTAAAGATTGCTGGTTTGGTTGTCGCTTTACCAATATCTGAGATAACAACCTCGGGTATCGTTGATCACTCTGTACAGCGCCGTAAAAGTCGATTGATGGTCGTGGAGATTCCTCTGTGCACACAGGATGGCGATATGAAAATATGGTGCAGGACAGTGGTACATGACTTAATGACGTCATCGAAGGGAAAAATCTGCTACGGTGCACAATTGATTATACGCTATTTAATAGAGACTGCGCATGCTGACATCAGAACAGTGTGCCTCAAATGGCGTCTTTTTGACCCAAAAATAGCAGCTTGGCTTCTTAATCCTGACCACCCTCCACAGAGCTTCGCTGAAGTTCTAAACTCTGCTCAGCTGAGCCTGCCAAAGGGTGGAAAGGAAGATGATTGTATGGTTTGTAGCGATATTGCGATGCTTGGACCTGTTATGGTTAAACAACATAGCATGCTTAAGACCCAAGGAATCAACATTAACACTCAGGTTTTGATTGAGGCGAGCAATACTCTCAAGATTAAAATTCAAAAGGTCGAAGCAGAAGCTCATAAGGCTGCAGGACACCCGTTTCTGATCAACAGTCCTCAACAGCTGAGAGAGGTGTTATTCGAGGAGTTGCGTTTGGACCAAAAGTGCAAAAAGAAGCTTGCAAGAACTTCCATCAAAAACTACAAGTCTACCTCAGAAGCTGTGGTTAGTAGTATAGTTGACTACACATCGACCACGTACAATTTGACGGCTGCAAGTTTGGACCAGACGTCGGCGGCCACAGGGCGATTGACTTCAGCCAATCCGAATCTTCAGTCTATCCCAAAACAAGTAATTGAAGTCTCCGGAATAAAGAAACAGCTTGTCGTCGGTAAACCAGAAGAGGTGGTGACAATCTATGCACGGAATGCTTACAGAAGTAGAGAAGGCTGGCTGTTACTTACAGCAGATTTTCAATCAATTGAATTGCGCCTGTTGTCTCACCTGTCAGAGGATCCTTCACTGGTTCAAATATTCAATGACAAGCAGTGTGCAGACGTCTTCACGACGCTTGCCTCACAATGGTATTATCAGGGAAGTGAAAAACTTGGACAAACTCTCAAAGTGAGCGCCGAGGAAGCAAAGGGATTTATGGAAAGCTTTCTAGGGCGATTCCCTCGAATAAAAGAATTTACTAGAAGCAGTATCGAAAGTTGTCAGCGAAAAGGCTACGTGTCCACAATTCTTAACAGAAGACGGTGGCTGCCACATATTAAGTCCTCCGACTTTACTCAACGGTCACAGGCTGAGCGGCAGGCTGTTAACTTCATCGTACAAGGTTCAGCAGCGGACATTTGTAAAGCAGCAATGATACAAGTAATGATAGCTGTATGCAAGGATCCTTATGTGAACGCAAGATTGCTCCTACAAATACATGATGAACTCCTTCTAGAAGTTCCTGGGGACGAAATCAAAAGAGTGGCAGCATACATCAAATCGATTATGGAGTCTACAGAAGAGCTGCTTGGTAGCAAAGTCAAGCTGAAGGTACCCCTTCCTGTGACTCTCAGCATTGGAAAGACCTGGGGACATATGGAAACCCTCTCTATCTGA

Transcript

rna-pdam_00002160

ATGAACGGGCCAGTTAAAAGGCGAGGAGGAGTTTCGCTTCTTCAAGATAGCTCCTTTTTAAATCAAGGGTTTCAACAACACTTTGATGAAGAATACCCATCAACGTTACAAGCGACAAATTACCTATCAAGGAGGCAAATGCATGCTGAACGCATATCTTGggaagaaattcaagaaaatccTCGGGACTATaaaaatccaattttgttCTCAGAACCAGGACAAAGAGTCATTCGAGCAATAAGACAATTTTATGGGGCGAGACAAGGAGCTATTAGCCATTCTTGTGCGCCAAAACAAGGTTGTTCTTCtccaaaggagaaaaatgtcaattctGAGAGCGGAAACGATGAgcgtaaaaataaaaggaaggCACAACAAAGTCCTATTACAAACTActtcaaagaaaggaaaactttgcaAGTAAAGGAGGCCGTGAAAGTTAAACCAGCCAATGCAAACAGAGATGCCTCCTGGGAGGATCAAACAAGTGTTGTTACAGTCTCAACGATGAATCTAACACAAAGAGAGGAATTCCGACAATGCCTTGAATCAGCAGAAGAAGTTGCTTGCACCTTAATTTATGAAGACGGGTCGTCACTGCTAAGATCAAGGAAACATCAAaaaacaaagaaacaagtaGAAGACGTGTGTGGCGAAAAGCGAAACTTAAAGATTGCTGGTTTGGTTGTCGCTTTACCAATATCTGAGATAACAACCTCGGGTATCGTTGATCACTCTGTACAGCGCCGTAAAAGTCGATTGATGGTCGTGGAGATTCCTCTGTGCACACAGGATGGCGATATGAAAATATGGTGCAGGACAGTGGTACATGACTTAATGACGTCATCGAAGGGAAAAATCTGCTACGGTGCACAATTGATTATACGCTATTTAATAGAGACTGCGCATGCTGACATCAGAACAGtgTGCCTCAAATGGCGTCTTTTTGACCCAAAAATAGCAGCTTGGCTTCTTAATCCTGACCACCCTCCACAGAGCTTCGCTGAAGTTCTAAACTCTGCTCAGCTGAGCCTGCCAAAGGGTGGAAAGGAAGATGATTGTATGGTTTGTAGCGATATTGCGATGCTTGGACCTGTTATGGTTAAACAACATAGCATGCTTAAGACCCAAGGAATCAACATTAACACTCAGGTTTTGATTGAGGCGAGCAATACTCTCAAGattaaaattcaaaaggtCGAAGCAGAAGCTCATAAGGCTGCAGGACACCCGTTTCTGATCAACAGTCCTCAACAGCTGAGAGAGGTGTTATTCGAGGAGTTGCGTTTGGACCAAAAGTGCAAAAAGAAGCTTGCAAGAACTTCCATCAAAAACTACAAGTCTACCTCAGAAGCTGTGGTTAGTAGTATAGTTGACTACACATCGACCACGTACAATTTGACGGCTGCAAGTTTGGACCAGACGTCGGCGGCCACAGGGCGATTGACTTCAGCCAATCCGAATCTTCAGTCTATCCCAAAACAAGTAATTGAAGTCTCCGGAATAAAGAAACAGCTTGTCGTCGGTAAACCAGAAGAGGTGGTGACAATCTATGCACGGAATGCTTACAGAAGTAGAGAAGGCTGGCTGTTACTTACAGCAGATTTTCAATCAATTGAATTGCGCCTGTTGTCTCACCTGTCAGAGGATCCTTCACTGGTTCAAATATTCAATGACAAGCAGTGTGCAGACGTCTTCACGACGCTTGCCTCACAATGGTATTATCAGGGAAGTGAAAAACTTGGACAAACTCTCAAAGTGAGCGCCGAGGAAGCAAAGGGATTTATGGAAAGCTTTCTAGGGCGATTCCCTCGAATAAAAGAATTTACTAGAAGCAGTATCGAAAGTTGTCAGCGAAAAGgCTACGTGTCCACAATTCTTAACAGAAGACGGTGGCTGCCACATATTAAGTCCTCCGACTTTACTCAACGGTCACAGGCTGAGCGGCAGGCTGTTAACTTCATCGTACAAGGTTCAGCAGCGGACATTTGTAAAGCAGCAATGATACAAGTAATGATAGCTGTATGCAAGGATCCTTATGTGAACGCAAGATTGCTCCTACAAATACATGATGAACTCCTTCTAGAAGTTCCTGGGGACGAAATCAAAAGAGTGGCAGCATACATCAAATCGATTATGGAGTCTACAGAAGAGCTGCTTGGTAGCAAAGTCAAGCTGAAGGTACCCCTTCCTGTGACTCTCAGCATTGGAAAGACCTGGGGACATATGGAAACCCTCTCTATCTGAGTTCCTTTTCacatttctttataattttttacaagtgggaaaataaattaactcGATAGCGTTTTACTTATCTTGACTCCGTAACATAAGACGTAACAATGCACTGTTTAATTCTTATCGGGCTGCCTCATATTTATTGTATTCAAGCTTGTTGTGCGATTTACCATTGTAAATTATCCGATGATAGGCCGAAGTTAGGGAAATGATCCCATCGAGAAAAGGGCAGATTACCAGTCTAATACGATGATTTTCTACTCATTAggcaaaaataataataattttatgcAAACAACTATCGTTTTCTTGCTCACAAATACCGGAAAGAAGACCGCCGTGGAGGAGGATGTGTGGCAGGCGGTTTCCTTTCCgagagaagaaaatgaaacgttTCGTTATCTGCGAAAAAGTTGACAAGTTGAAATCAGTTGACAAGTTCAATTAAATGACGTTAAAATGTTTCAGCTGATAgcaaagtcaaaatttttctccattttcaatttataaaaagtGATGTTTGTCTAACATATTTTCCACCACTGTAGAGTCTATTTGAAGATATGTAAACCTACAAAACAGATGACGGACCGAGCAACTTCGATTTATTCGATCAAGTAGAcactgaattttcaaaatttcaatagtATGCACTGgttttccaatttcttttatcGTTACACCTCAGTAAAAACCTAATAAAAACTTG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18049 all species →	DNA_pol_P_Exo	DNA polymerase nu pseudo-exo	Domain	Interproscan
PF00476 all species →	DNA_pol_A	DNA polymerase family A	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR002298 all species →	Family	DNA polymerase A	Interproscan
IPR040940 all species →	Domain	DNA polymerase nu, pseudo-exo domain	Interproscan
IPR001098 all species →	Domain	DNA-directed DNA polymerase, family A, palm domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10133 all species →	DNA POLYMERASE I	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003887 all species →	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0006261 all species →	Biological Process	DNA-templated DNA replication	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0097681 all species →	Biological Process	double-strand break repair via alternative nonhomologous end joining	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16618	POLN; DNA polymerase nu	EC:2.7.7.7	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.