Gene detail

Detailed information of RMX47439.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2422:762500...775567
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00002162

ATGAGATCAGCCATGAGGCACAGTATGCCTCCTCCTTTGATGGCCCAGAGGGCTGTCCCACCAAATGTGAGAGGGCCCCCACCTCGTGGACCCACAGGGCAAGGTCCCAGAGGGTCTTTATTGGGTCAACCACCTGGAGGTTTTATGAGGGGACCGTTTGACCCAAGGAATATGATGAACAATACAAGACCGCCTTTTGGAGGACCTCTGGGCAATGCTCCCATGTTGCCAAATATACAGTCAAGGCCCATGATGCCAAATCAAATGCCACCAATGATGCCAAATCAGCAGCAAATGCCGATGCAGATGGCTCAGCAGCAGCAGCTATCTCAAGGCAAAGATCCACCTATGATTGATACCAATGGTGACATGTGGTTAGAACACAAGACTTCAGAAGGAAAAGTGTATTATTACAATGCAAGAACCAGAGAGTCTGCTTGGGAGAAACCCAAAAACCTTGTTACTCCACCTGCGCAAAATCAACAGCCTGCCCAATCTGGACAGCAGACATTGCAGCCAGTTCAAGGACAAAACATTCCTCCTGAAGGGCAACAGCAACAAACACCAGCTGCAGAGCCGGAAGCAAAGCCAGGAGATACAGTTAATACGCAGCAGAATCAACAACAAGTGGGAACTCAGAATGGTGCACAGCAGGTAGCAGGCGGCACTAATGTAACAGCAGATAAGCTACCACCACAAAACAATCCTGGTATGCCATCACCTGGTCCTTTCCCGTCAAGTATGCCACCTCCGCGACTGCCTCCCCCAGGAATGATTCCAGGTATGATGCCGCCACGCCTTCCGCCAACAGGTATGCCTCCCCCAGGTATGCCTCCTCCAGGGCTGCCCATGCCACCAATGGGAATGCCACTGCCTCCTAGGAGTGATTGGTCTGAGCATCGTGCAGGAGATGGAAGGGGTAATGCTGGGGATAAGGAAAAGTCCACGGAAGGTGAAGCAAATGAGGAAAACAATGAAGAGAGCAAGACAGTGAAAGATGAAGAAAAAGAAAATGATGAAGCTAAGAAGGATGAAGGCCAGGAAGATGATGGTGACAAGAGCAAACCTGTTGCCAGTCAACTAATTCCAGGAACAAGCTGGTGTGTGGTATGGACTGGAGATGAAAAGATGTTCTTTTTCAATCCTACAACGCGACTGTCCATATGGGAGAAACCAGAAGAGCTGGAGGATAATGATAAAGTTGATGATATTGTCAGCAAGGGACCTCCTAAAAGGCAACCGTCAACTGAATTAAAGAGAGAGAACAAGACTCCAACAGATGAAGATACAGATGAAGTCCCTCCAGCCAAAAAACAAAGGACTGCAAGCCAAAGTGAGGAAGTACTTGATGAACCAATGACAGAAGAGGAACTAAAGGAAGATGTGCCACAATCAAAGCCCTACGAAGAACAGGCTCCGCCAGCTGAAGAGCCTGTAGCTGTAGTCCAAACAACCAGAAATGTGCCTGCACAGGAGAAGAAAAAGATGCTTTCGCTTGAGGAGAGAATGAAAGAGTTCAGAGAAATGATGTTAGAGAGAGGGGTGTCAGCATTTTCAACCTGGGAAAAAGAGCTGCCAAAAATTGTATTTGATCCTCGATTTTTACTGCTGACCCAAAAAGAACGGAAGCAGTGTTTTGAAAAATTTGTGCGCACACGGGCAGATGAGGAGAGGCAAGAAAGAAAGAATAAACTGAAGGCCAAAAAAGATGAGTTTAAGGCTCTGGTAGAAGAAGCTAAAACTGCAGGAAAAACATCGTTCAGTGAGTTTGCTATGAAGTATGGAAAAGATGATCGCTTCAAAGGCATAGAGAAGATGAAAGAAAGAGAGACTCTTTTTACAGAGTTTATGGCTGAGCTGAAAAAGAAGGAAAAAGAAAATCTGCGAGTCAAGCAAGATAAGATTCGTAATGATTTTGAGGAACTATTGGATGAACAGAAACTAGACAATAAGGCTCAGTGGCGTAAGGTTCGTCACAAGATAGAAAAAGACCCTCGCTACAAGGCGAAAGAGAATGCAGATAAAGAAAAAGAAAAAGAGAAACAGGAAAGAATAGAAGCAAGTCTCAGGGAACGAGAGCGTGAGGTCAGGGCAAGTCAAGCTGAACTTGCTAAGGCCAGAGAGAAGGAGAAGGAACAACACCTCAGAGACAAAGCTGAACAGCATTTCAATGCATTGTTAGCTGATATGGTTCGCAATGCAGATGTAGGCTGGAAGGAGACAAAAAAGACATTGCGTAAAGACCATCGCTGGGGAATGGCTGATGCCCTGAGTAAAAATGACAAAGAAGCACTTTTTAAAAGCCACATAGAAAGCTTAAACCATAGAAAAAAGGAGCAGTTTAGAAAACTATTGGATGAAACTCATGAGTTAACCCTTACTTCATCATGGCGAAGTATTAGAAAACTAATTAAAGAGGACCCCAGATATTCCAAGTTTTCGAGCCAGGACAGAAAACGTGAAGAAGAGTTTAACCAATATCTGCGAGATAAACTGGCAGATGCCAAAGGGGACTTTCGGCAGTTACTGAAAGAAACGCATTCATTAACATACAAAACAAAGAAACAAATTGATGAATCTCATAAACATCTAAAAGATATCGAAGAAACTCTTAAGAAAGACAAAAGATACTTGATACTGGAATGTGTTCCAGAAGAACGAAACAGATTGCTCAACAGTTACATTGATGAGCTGTTCAGGACTGGACCACCCCCTCCTCCAACAGCTTCCGCACCATCAAACAGATCCAAAATGCAT

Transcript

rna-pdam_00002162

ACTCACTGTGCTGTTTATCCATGAGatcAGCCATGAGGCACAGTATGCCTCCTCCTTTGATGGCCCAGAGGGCTGTCCCACCAAATGTGAGAGGGCCCCCACCTCGTGGACCCACAGGGCAAGGTCCCAGAGGGTCTTTATTGGGTCAACCACCTGGAGGTTTTATGAGGGGACCGTTTGACCCAAGGAATATGATGAACAATACAAGACCGCCTTTTGGAGGACCTCTGGGCAATGCTCCCATGTTGCCAAATAtacagTCAAGGCCCATGATGCCAAATCAAATGCCACCAATGATGCCAAATCAGCAGCAAATGCCGATGCAGATGGCTCAGCAGCAGCAGCTATCTCAAGGCAAAGATCCACCTATGATTGATACCAATGGTGACATGTGGTTAGAACACAAGACTTCAGAAGGAAAAGTGTATTATTACAATGCAAGAACCAGAGAGTCTGCTTGGGAGAAACCCAAAAACCTTGTTACTCCACCTGCGCAAAATCAACAGCCTGCCCAATCTGGACAGCAGACATTGCAGCCAGTTCAAGGACAAAACATTCCTCCTGAAGGGCAACAGCAACAAACACCAGCTGCAGAGCCGGAAGCAAAGCCAGGAGATACAGTTAATACGCAGCAGAATCAACAACAAGTGGGAACTCAGAATGGTGCACAGCAGGTAGCAGGCGGCACTAATGTAACAGCAGATAAGCTACCACCACAAAACAATCCTGGTATGCCATCACCTGGTCCTTTCCCGTCAAGTATGCCACCTCCGCGACTGCCTCCCCCAGGAATGATTCCAGGTATGATGCCGCCACGCCTTCCGCCAACAGGTATGCCTCCCCCAGGTATGCCTCCTCCAGGGCTGCCCATGCCACCAATGGGAATGCCACTGCCTCCTAGGAGTGATTGGTCTGAGCATCGTGCAGGAGATGGAAGGGGTAATGCTGGGGATAAGGAAAAGTCCACGGAAGGTGAAGCAAATGAGGAAAACAATGAAGAGAGCAAGACAGTGAAAGatgaagaaaaagaaaatgatgaagcTAAGAAGGATGAAGGCCAGGAAGATGATGGTGACAAGAGCAAACCTGTTGCCAGTCAACTAATTCCAGGAACAAGCTGGTGTGTGGTATGGACTGGAGATGAAAAGATGTTCTTTTTCAATCCTACAACGCGACTGTCCATATGGGAGAAACCAGAAGAGCTGGAGGATAATGATAAAGTTGATGATATTGTCAGCAAGGGACCTCCTAAAAGGCAACCGTCAACTGAATTAAAGAGAGAGAACAAGACTCCAACAGATGAAGATACAGATGAAGTCCCTCCAGCCAAAAAACAAAGGACTGCAAGCCAAAGTGAGGAAGTACTTGATGAACCAATGACAGAAGAGGAACTAAAGGAAGATGTGCCACAATCAAAGCCCTACGAAGAACAGGCTCCGCCAGCTGAAGAGCCTGTAGCTGTAGTCCAAACAACCAGAAATGTGCCTGCacaggagaagaaaaagatgcTTTCGCTTGAGGAGAGAATGAAAGAGTTCAGAGAAATGATGTTAGAGAGAGGGGTGTCAGCATTTTCAACCTGGGAAAAAGAGCTGccaaaaattgtatttgatCCTCGATTTTTACTGCTGACCCAAAAAGAACGGAAgcagtgttttgaaaaatttgtgcGCACACGGGCAGATGAGGAGAggcaagaaagaaagaataaacTGAAGGCCAAAAAAGATGAGTTTAAGGCTCTGGTAGAAGAAGCTAAAACTGCAGGAAAAACATCGTTCAGTGAGTTTGCTATGAAGTATGGAAAAGATGATCGCTTCAAAGGCATAGAGAAgatgaaagaaagagagactCTTTTTACAGAGTTTATGGCTGagctgaaaaagaaggaaaaagaaaatctgcgAGTCAAGCAAGATAAGATTCGTAATGATTTTGAGGAACTATTGGATGAACAGAAACTAGACAATAAGGCTCAGTGGCGTAAGGTTCGTCACAAGATAGAAAAAGACCCTCGCTACAAGGCGAAAGAGAAtgcagataaagaaaaagaaaaagagaaacaggAAAGAATAGAAGCAAGTCTCAGGGAACGAGAGCGTGAGGTCAGGGCAAGTCAAGCTGAACTTGCTAAGGCCagagagaaggagaaggaacaACACCTCAGAGACAAAGCTGAACAGCATTTCAATGCATTGTTAGCTGATATGGTTCGCAATGCAGATGTAGGCTGGAAGGAGACAAAAAAGACATTGCGTAAAGACCATCGCTGGGGAATGGCTGATGCCCTGagtaaaaatgacaaagaagcACTTTTTAAAAGCCACATAGAAAGCTTAAACCATAGAAAAAAGGAGCAGTTTAGAAAACTATTGGATGAAACTCATGAGttaaCCCTTACTTCATCATGGCGAAGTATTAGAAAACTAATTAAAGAGGACCCCAGATATTCCAAGTTTTCGAGCCAGGACAGAAAACGTGAAGAAGAGTTTAACCAATATCTGCGAGATAAACTGGCAGATGCCAAAGGGGACTTTCGGCAGTTACTGAAAGAAACGCATTCATTAACATACAAaacaaagaaacaaattgatgAATCTCATAAACATCTAAAAGATATCGAAGAAACTCTTAAGAAAGACAAAAGATACTTGATACTGGAATGTGTTCCAGAAGAACGAAACAGATTGCTCAACAGTTACATTGATGAGCTGTTCAGGACTGGACCACCCCCTCCTCCAACAGCTTCCGCACCATCAAACAGATCCAAAATGCAT

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01846 all species →	FF	FF domain	Family	Interproscan
PF00397 all species →	WW	WW domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036517 all species →	Homologous_superfamily	FF domain superfamily	Interproscan
IPR001202 all species →	Domain	WW domain	Interproscan
IPR036020 all species →	Homologous_superfamily	WW domain superfamily	Interproscan
IPR002713 all species →	Domain	FF domain	Interproscan
IPR045148 all species →	Family	Transcription elongation regulator 1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15377 all species →	TRANSCRIPTION ELONGATION REGULATOR 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0070063 all species →	Molecular Function	RNA polymerase binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12824	TCERG1, CA150; transcription elongation regulator 1	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.