Gene detail

Detailed information of RMX47623.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2408:128662...153939
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00015138

ATGGCGGCCGAACTTGAGGAAATGGCGCCTCCATTTTCACTTCATTCTATGGACGATACTGGTTCCTCTGGTAAAAATACGATAGAATTGGGGACTGAAGAAGAAGAAGAAAAAGGGCAGGACCACAAAGGGGTTTTCGTTTTAAGAGAAAAAAGTGGTGTTATTTACCCGGTTGACTACAAATATAGAATTGATACTTGCTATCCTGGATATAATCCACGTTTTGTCAATGCACCAACTGTTATCACGTTGGTTGGTTTACCAGCAAGGGGCAAAACATATATGGCCAAAAAACTGGGCCTGTTCAATGTTGGTGAGTACAGAAGAAGGGCAGTGGGGTCTGATAAACTACATGACTTTTTCCGTGTGGACAATGCCGAAGCACAAAAAGTTAGGAGACAATGTGCTCTAGCTTGCTTGGAAGATGTCAGCGAGTTTTTAACTCGTGCTGGACAAGTTGCAATATTTGATGCTACAAATACAACATTTGAGCGAAGGGCCTTAATCATGGACTTTTGCACAAAAAGAGGATTCAAGGTTTTTTTCATGGAATCCATTTGTGAAGATTCAGATATTGTCGCTGCAAATATTAAGGTGATGGGACATGAATTTCTCAGTAATGAGGAGTTTAAAACATGGGAGGTATGGGTAGATTCTCCAGCTTCAACTTTACCTCCACAGGAAGTTAAAGTTTTCAGCCCAGACTATGTGACTGTGGACCGAGATACAGCCATCATCAATGCAGGAGAACAGTACATAGTAAACAGCATTGATGGTTACCTTCAAAGCAGAGCAGTCTATTTTTTGATGAACTCCCATATCAAGAAGAGGTCAATATATCTTGCTAGGTTTTCATCAGCTCTGGCGAAATTTATCGAAGATGAAAAAATCAAAGATTTAAAGGTTTGGACAAGTCAGTTAAAAAGGGCAGTGGACACTGCTCAGTATCTCAAGGGAGTGACAACTGAGAGATGGAAGGCACTGAATGAAATGGACCACGGCATCTATGATGGAATGACTCTGGATGAGATAAAAAAGATGGACCCTGAAGAACACAAAGTTATAGAAGAACACCCGTTCAATTATCGATACCCCAGGGGAGAGTCTTATAGTGACGTGTGCGCTCGACTCGAACCAGTTATAATGGAATTAGAAAGACAATCCAATGTCTTGGTTATTTGCCACGAGGCTATCCTGCAGTGTCTCATGGCATACTTTCTGGACCACAGCTCAGGAGAACTGCCAAATCTTCACATTCCTTTTCACACAGTCTTCAAACTGACGCCGATTGCTTATGGCTGCAGAGTTGAGAGTGGCTGGGACAAGTCCACCAGTCTCAAGCAGACCAAAATTGTCAAGCATTCGAACGTTCTCCTTTATGGCTTTTCTTTCCATTTGATTCTCACCCTGGGCTCACTTGGTTTTACGTGTTACTCATTGAACCGACTGGACAGTCGTCTAACAGCTATTGAGCAAAATTTGATGCTGAAAAGTACTCCATATCAACACGCAAATGGTGCGACTATTAAAATTACCTCTGAGAACGCGCCTGGAAGTGGATGGAAGACGACGGACCAAATCGTCAAAAGAGATATTTCAAGTCCTTCTATCTGTAGCAAGTGTAGAACGGTTTGTTCCAACTCGAATACACAACAAAATAATAAGACACTGGATAAAGGTCAAGAGAAGATCGTTTGCATTGAAGGTCGCACTGGATCTCAAGGTCCACCAGGCCCTCGCGGTTCTCGTGGACCAGCAGGTCCCCAGGGACCTCCCGGCAGAAAAGGAAGAAAAGGAAAAAAGGGGCCACCGGGTCCCCAAGGGAAGCGTGGAATCAAAGGACTACCAGGACCCCCCGGAAAATCAACAGATTCAAAAAGAGGAAGTAATGTGCGGCAGTTAGAAAAACCACATTTCACTACAAAACCTTCCTCTTTGACGGTTAGAGAGAATCAAAATGTGATATTGTCTTGTAAGGCAGCTGGGTTTCCAAAGCCCATAATAACGTGGTATAAAAACGGACGAGTGATCGAGCACGAGAGGAAGCAATTTGAAGAAGGACACCTGGAATTTAGAAATATCCTTTTTGAAGATCGTGGTCTCTATACCTGCACCGCAGAGAATATTTTGGGTAGAGAAAAAATAACCGCAAATATCACAGTACAAGTACCAACAAAATTCATAATTAAACCAGAGATATCTGTGACAGCTTACACAGCACGGGACTTTACTCTAAAATGCGACATATTTGGCCACCCTACCCCCGTGGTAACATGGAAAAGAACGCACGGTGAACTCCCTGTTAGCAGGCATGTCATTTCTGGAAACAAGCTGACAATTCGCAACACGACAAAAGATGAGTTTGGAAACTACATTTGCCAAGGGGTGAATCCGTTACAAAGTGTGATAGGTGTGATATGGGTCGTGGTTAAAGATCCAGTGAATCCTTACATTGTTTCGAGCCCTGTAAGTAAAATACAGGTGCAGCGTATTGGCGAATCTGTTAACTTAAGTTGCTCCGCTGGTGGTACTCCTTTACCGAAAATCCAATGGATCAAGGACGGACGACGAGTAAAATCAACAGCAGAACACCACAGCAATGGTTTGATAAGGAGTGAGCTTGTCATTCATCAGTTCAAGCCGAACGATGCTGGAAACTTCACATGTCTATTCTATAATGATAAGAATGCTACAGCCGAAGCTAATACAGTTTTAGATTTAATCAATTGTGGCAATCCTGGTTCTCCACTCAATGGACAAAAACATGGCTCACACTATTGGACAGGGGAATATGTGTCTTTCACATGCATGCCGGGATATCGACTCATTGGACCGTCTATGAGACTTTGTCTTCCATCTAGTCAGTGGAGTGGAATACAACCTTCATGTCAAAGAGTATGTCCTTCATTGAAAAAACTGGAAAATGGCTTCACTCACGGACAGCAAAACTGGGAAGGGGAACGTATTTCATTCAGTTGTCAGCAAGGTTACTTGCTTAGAGGATCATCAGAACGTCACTGCTTGGGTAATGGATCATGGACAGGAGAGCAGCCTACTTGTGCATATGTGGCGCCAGGCAATGCCTATGCTCTGTATTTCCCGCGAAAAGGAACGAGCGACTATGTTATCTCTGGAGGTATGCCAAGGCTAAATGCCATGACAGTTTGTTTATGGATGAAAACCACTGCAAGTAACGAAGGAGTACTGCTGAGCTACGCTGTTTCTGGCCAGGACAACGAACTGCTTCTACATGACTATAGGAATTTTCTTGTCTGGGTCGGAGGCTCAAACAGACGTACCTCTGTATCAGCAAATGATGGAGACTGGCATCACATTTGCACAACGTGGGAGAATATCGCTGGATCATGGAAATTGTTCAAAGATGGTCGAGTTGCAGCTTCCGGTCACGGCCTCGCAAAAGGTCACTGGATCCGCGGAGGTGGCGTCCTTATTTTAGGACAAGAGCAAGACTCTCTGGGGGGAAATTTTGAAGCAAGCCAAAGTTTTATCGGTAAACTCACAGGTGTCAACATTTGGGGTCGCGTGATAAGAGAAGATGAAATCACGCGCATGTCTAAGACGTGTCTGATAGGAGAAGGGGACCTCTTTCAATGGCGCAACTTCAAAGATATTGTGCTAGGCTCAGTGCAGTCAATTTACCCGTCCTGCTAA

Transcript

rna-pdam_00015138

ACAAAGATGGCGGCCGAACTTGAGGAAATGGCGCCTCCATTTTCACTTCATTCTATGGACGATACTGGTTCCTCTGGTAAAAATACGATAGAATTGGGGactgaagaagaagaagaaaaagggcAGGACCACAAAGGGGTTTTcgttttaagagaaaaaagtggTGTTATTTACCCGGTTGACTACAAATATAGAATTGatacTTGCTATCCTGGATATAATCCACGTTTTGTCAATGCACCAACTGTTATCACGTTGGTTGGTTTACCAGCAAGGGGCAAAACATATATGGCCAAAAAACTGGGCCtgTTCAATGTTGGTGAGTACAGAAGAAGGGCAGTGGGGTCTGATAAACTACATGACTTTTTCCGTGTGGACAATGCCGAAGCACAAAAAGTTAGGAGACAATGTGCTCTAGCTTGCTTGGAAGATGTCAGCGAGTTTTTAACTCGTGCTGGACAAGTTGCAATATTTGATGCTACAAATACAACATTTGAGCGAAGGGCCTTAATCATGGACTTTTGCACAAAAAGAGGATTCAAGgtttttttcatGGAATCCATTTGTGAAGATTCAGATATTGTCGCTGCAAATAttaaggtGATGGGACATGAATTTCTCAGTAATGAGGAGTTTAAAACATGGGAGGTATGGGTAGATTCTCCAGCTTCAACTTTACCTCCACAGGAAGTTAAAGTTTTCAGCCCAGACTATGTGACTGTGGACCGAGATACAGCCATCATCAATGCAGGAGAACAGTACATAGTAAACAGCATTGATGGTTACCTTCAAAGCAGAGCAGTCTATTTTTTGATGAACTCCCATATCAAGAAGAGGTCAATATATCTTGCTAggTTTTCATCAGCTCTGGCGAAATTTATCgaagatgaaaaaatcaaagatttaAAGGTTTGGACAAGTCAGTTAAAAAGGGCAGTGGACACTGCTCAGTATCTCAAGGGAGTGACAACTGAGAGATGGAAGGCACTGAATGAAATGGACCACGGCATCTATGATGGAATGACTCTGGATGAGATAAAAAAGATGGACCCTGAAGAACACAAAGTTATAGAAGAACACCCGTTCAATTATCGATACCCCAGGGGAGAGTCTTATAGTGACGTGTGCGCTCGACTCGAACCAGTTATAATGGAATTAGAAAGACAATCCAATGTCTTGGTTATTTGCCACgagGCTATCCTGCAGTGTCTCATGGCATACTTTCTGGACCACAGCTCAGGAGAACTGCCAAATCTTCACATTCCTTTTCACACAGTCTTCAAACTGACGCCGATTGCTTATGGCTGCAGAGTTGAGAGTGGCTGGGACAAGTCCACCAGTCTCAAGCAGACCAAAATTGTCAAGCATTCGAACGTTCTCCTTTATggcttttctttccatttgaTTCTCACCCTGGGCTCACTTGGTTTTACGTGTTACTCATTGAACCGACTGGACAGTCGTCTAACAGCTATTGAGCAAAATTTGATGCTGAAAAGTACTCCATATCAACACGCAAATGGTGCGACTATTAAAATTACCTCTGAGAACGCGCCTGGAAGTGGATGGAAGACGACGGACCAAATCGTCAAAAGAGATATTTCAAGTCCTTCTATCTGTAGCAAGTGTAGAACGGTTTGTTCCAACTCGAATACACAACAAAATAATAAGACACTGGATAAAGGTCAAGAGAAGATCGTTTGCATTGAAGGTCGCACTGGATCTCAAGGTCCACCAGGCCCTCGCGGTTCTCGTGGACCAGCAGGTCCCCAGGGACCTCCCGgcagaaaaggaagaaaaggaaaaaaggggCCACCGGGTCCCCAAGGGAAGCGTGGAATCAAAGGACTACCAGGACCCCCCGGAAAATCAACAGATTCAAAAAGAGGAAGTAATGTGCGGCAGTTAGaaaaaccaCATTTCACTACAAAACCTTCCTCTTTGACGGTTAGAGAGAATCAAAATGTGATATTGTCTTGTAAGGCAGCTGGGTTTCCAAAGCCCATAATAACGTGGTATAAAAACGGACGAGTGATCGAGCACGAGAGGAAGCAATTTGAAGAAGGACACCTGGAATTTAGAAATATCCTTTTTGAAGATCGTGGTCTCTATACCTGCACCGCAGAGAATATTTTGGGTAGAGAAAAAATAACCGCAAATATCACAGTACAAGTACCAACAAAATTCATAATTAAACCAGAGATATCTGTGACAGCTTACACAGCACGGGACTTTACTCTAAAATGCGACATATTTGGCCACCCTACCCCCGTGGTAACATGGAAAAGAACGCACGGTGAACTCCCTGTTAGCAGGCATGTCATTTCTGGAAACAAGCTGACAATTCGCAACACGACAAAAGATGAGTTTGGAAACTACATTTGCCAAGGGGTGAATCCGTTACAAAGTGTGATAGGTGTGATATGGGTCGTGGTTAAAGATCCAGTGAATCCTTACATTGTTTCGAGCCCTGTAAGTAAAATACAGGTGCAGCGTATTGGCGAATCTGTTAACTTAAGTTGCTCCGCTGGTGGTACTCCTTTACCGAAAATCCAATGGATCAAGGACGGACGACGAGTAAAATCAACAGCAGAACACCACAGCAATGGTTTGATAAGGAGTGAGCTTGTCATTCATCAGTTCAAGCCGAACGATGCTGGAAACTTCACATGTCTATTCTATAATGATAAGAATGCTACAGCCGAAGCTAATACAGTTTTAGatttaatCAATTGTGGCAATCCTGGTTCTCCACTCAATGGACAAAAACATGGCTCACACTATTGGACAGGGGAATATGTGTCTTTCACATGCATGCCGGGATATCGACTCATTGGACCGTCTATGAGACTTTGTCTTCCATCTAGTCAGTGGAGTGGAATACAACCTTCATGTCAAAGAGTATGTCCTTCATtgaaaaaactggaaaatggCTTCACTCACGGACAGCAAAACTGGGAAGGGGAACGTATTTCATTCAGTTGTCAGCAAGGTTACTTGCTTAGAGGATCATCAGAACGTCACTGCTTGGGTAATGGATCATGGACAGGAGAGCAGCCTACTTGTGCATATGTGGCGCCAGGCAATGCCTATGCTCTGTATTTCCCGCGAAAAGGAACGAGCGACTATGTTATCTCTGGAGGTATGCCAAGGCTAAATGCCATGACAGTTTGTTTATGGATGAAAACCACTGCAAGTAACGAAGGAGTACTGCTGAGCTACGCTGTTTCTGGCCAGGACAACGAACTGCTTCTACATGACTATAGGAATTTTCTTGTCTGGGTCGGAGGCTCAAACAGACGTACCTCTGTATCAGCAAATGATGGAGACTGGCATCACATTTGCACAACGTGGGAGAATATCGCTGGATCATGGAAATTGTTCAAAGATGGTCGAGTTGCAGCTTCCGGTCACGGCCTCGCAAAAGGTCACTGGATCCGCGGAGGTGGCGTCCTTATTTTAGGACAAGAGCAAGACTCTCTGGGGGGAAATTTTGAAGCAAGCCAAAGTTTTATCGGTAAACTCACAGGTGTCAACATTTGGGGTCGCGTGATAAGAGAAGATGAAATCACGCGCATGTCTAAGACGTGTCTGATAGGAGAAGGGGACCTCTTTCAATGGCGCAACTTCAAAGATATTGTGCTAGGCTCAGTGCAGTCAATTTACCCGTCCTGCTAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00084 all species →	Sushi	Sushi repeat (SCR repeat)	Domain	Interproscan
PF01391 all species →	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan
PF00354 all species →	Pentaxin	Pentaxin family	Domain	Interproscan
PF01591 all species →	6PF2K	6-phosphofructo-2-kinase	Domain	Interproscan
PF00300 all species →	His_Phos_1	Histidine phosphatase superfamily (branch 1)	Domain	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013078 all species →	Family	Histidine phosphatase superfamily, clade-1	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR000436 all species →	Domain	Sushi/SCR/CCP domain	Interproscan
IPR035976 all species →	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR001759 all species →	Family	Pentraxin-related	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR003094 all species →	Family	Fructose-2,6-bisphosphatase	Interproscan
IPR008160 all species →	Repeat	Collagen triple helix repeat	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR013079 all species →	Domain	6-phosphofructo-2-kinase	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR029033 all species →	Homologous_superfamily	Histidine phosphatase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10606 all species →	6-PHOSPHOFRUCTO-2-KINASE/FRUCTOSE-2,6-BISPHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0003873 all species →	Molecular Function	6-phosphofructo-2-kinase activity	Interproscan
GO:0004331 all species →	Molecular Function	fructose-2,6-bisphosphate 2-phosphatase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006003 all species →	Biological Process	fructose 2,6-bisphosphate metabolic process	Interproscan
GO:0006000 all species →	Biological Process	fructose metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX47623.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.