Gene detail

Detailed information of RMX47751.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2378:161806...182848
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00011789

TCTGCGCGTGCTTTGCGTGACTTCACCAAATTTACGCAACTTGTCAATCAAGTATTCCAAATATGGTATTTCCCATAGGCCTTTTCGGGTAGGATTCTAAACAAGATGGTGGACTAGGGTACGAGGAACcaggaattgaaatattttgttgacaataCTTCAGCGCGATGGCATTATTACAGTGGCGCCGGTTCAATTTTTTCGACAAGGAGGTTCTGAAAGACCCCGGAACGACTCAGCCATTTACGGGTCTGAAGGATACTAGTATCACAGCATGCACAAGTGGAAGAGGCCAGCTAGTTATTGGAGATTCAGCTGGTTTTGTTCACTTCCTGGGCCGTGATTTAACCATCACATCTTTCCAGGCCTACGAAATGCGTGTGTCACATTTTTACCAACTGaaacagcaaaatattttatttacagttgGAGAAGATGAAGTAGGAGGAATTGATCCAATTATGAGAGTTTGGAATCTAGacaagaTTGACAAGTATGGAAATCCCGTTTGCTGTTGCATGCAGCGGCTTATTCCAGGAAACAAACCAGTTGCGGTGTCTTGTTTGGCATTGATGGAAAACTTGACACAGATGGCTGTAGGATTTGCCGATGGTACTGTTCTTGTATACAAAGGAGATATCACCCGTGATAGGCACACAAAGCAGAGAATTGTTCATCATGACAAGCATCCTGTAACAGGGCTTGCcttcaaacagacaagtgatagTGTAATTCTGTTCGTTGTGACAACTGAAACAGTTCTGTCATACAACACTTCAGCCAAAGATCGTCGAGAAGTACTTGATGCTCATGGTTGTGAACTCCGTTGTTCAGTTATGAGTGATGCTTCAcaagaaaaccaatttattGTGGCTCGAAAAGAGgctttgtatttttatcaagTTGATGGCAGAGGTCCTTGCTTAGCATTTGAAGGTGAGAAACAGATGGTAACATGGTGGCGAGGGTATCTTGTTGTGGTCAGTAAGGATAACAAACAGATTCAAAGACCAGCAGTAGGAGGAAGCTCTCAACCAAGGAATGTCAATGTTGTCACTGTTTATGACattcaaaacaagtttataGcTTTTACTGGGACATTCCAGGGTGTAATTGATGTGGTATGTGAATGGGGCAGCTTGTTTGTGATCACAATGGAAAATAAGATTTTTCAGTTAGAGGAGAAGGATACGCAAACAAAGCTGgaaattctttttaagaaaaatctttatGCTATGGCAATCAGCTTGGCAAAAAGTCAGCATTATTCTGATGGACTGATTGACATCTTTACACAATATGGAGATCACTTGTACAGCAAAGGGGATCATGATGGAGCAATAAAACAGTACATTAAAACCATTGGTCATCTGGAGCCTTCTTATGTCATTCGTAAGtttttggaTGCTCAGAGAATTCACAACCTTACAGCGTATCTTCAGGCTCTCCACAAACAAGGTCTGGCCAACACAGACCATACCACCCTTCTTTTGAACTGTTACACCAAGCTGAAGGATGTCTCAATGTTGGATGAGTTTATCATGACTGACAGGGAATTAAACTTTGATGTTGAAACTGCCATCAAGGTGTGTCGTCAGGCAGGATATTTCAAGCATGCGGTGTATCTAGCGGAGAAATACGAACAACACGACTTATATTTAAAGATTCAACTGGAAGACTTGAAGGATTACCAGAGAGCGCTGTCCTACATTGGAAAACTAGGATTTTATGAGGCTGAaggaaacatgaaaaaatatggaaagaGTTTGGTGAATGCTGTCCCTGATGAATCAACAAAGCTGCTAAAAGTTTTATGTACGGATTACAAGCCGCAGCGACTTCATGAACGAACAGTTTCCGGTTCTGTCACACCTGTCAGTGCTGGGGTTTATCAGTCCTTCACAACCGCTCTCGATCCTGCATCAGATATGGAGAGGAAGATTTACAAGGCTCGCGCCGAAGAGTTTATTCACATCTTTGTTCATCAAAAAGCCAAACTGATTGAGTTTCTGGAACATATGGTGCAGgTTCAGCCTAATTCGTCTAACTTGGTGTATAACACTCTCCTTGAGCTGTATCTGAATGATGCTGCTCGTCAGAAGAATGTGGAAGCGCAAGTCGAACATGAACGTAAAGCTCTtgatttgctgaaaaatgtgGAGGCACGTTACGACATTGACCACGCCCTGGTACTAGCACAGATGCACCACTTCAAGGCTGGTATCCTGTATCTGTACGAAAAAGCCAAACTATACCAACAAATCCTTCATTACCATATGGAGCAGAACGAATATAGTCACGTGATAGACACGTGCAAAAAATATGGgacGTCAGATCCAAGTTTGTGGGTGCAAGCTCTCTCTTACTTTGCCCGACGTGAAACAGACTGCAAGTCCCAAATCAAGGAAGTTCTTGTCAACTTTACGTGAACTACGAGCATGTTTCTTTTAAACCTCTTGTTAATCAATTTATGCGACTTTGACTACCTACTGAGAACTTCTCTTTTACAGGACTACATCATACGTCGCTTGCAAATGGAAGACGAACTTATCGCAAATGATGAGCGTTATATCCGACAATATCGCGAGGAAACGGAAAAAATGAggaatcaaatcaaagaactGAAGACAAGTGCAAAGATATTCCAAGGTGCAAAATGCAGCGTCTGTTCCCGACCTTTGGACCTGCCGGCTGTACATTTCTTGTGCCAGCACTCATTTCACCAAAACTGTTTTGAAGGATACGCAGAATCAGACAACGAATGCCCGATATGTGCTCCGGAAAACAGAAAAGTACTTGACATAATAAGACAACAGGAGCAGGCGAAGGATCTTCATGAACAATTTCATTGCCAGCTGGAGAGAGCGGCGGATGGGTTTTCTGTTGTGGCTGAGTATTACGGACGCGGTGTTTTCAAtaagGTTACTGTGGTTACTGACCCGAACCTCTCACGAGGAGAGTCATCTCGCGAAGCTTCTGTAGATCAGCGCGAGAGACTTTTGAACACCTCTCACAGCTAGCTGAAGGGCAGAGCCGGTGAGCCTTCGTTGCTCATGGTATGCGGTGGTACCATTGGGGAAATGCGGAGAGACGTGCATTCCTTACCGCACAAAAGAAGTGTCTTccgaagaaaattaaataatttggtagaaaaataattacaactAGATTTTGAAGATGTTTGAGAGTCTGGCTGATGATGAAGTTGCAATTCGTGTTGATCTAATTGCTACTTTTGTCGCGTTCAGAATAAACCCTTACGGTGTTGTGGCTATTTTGAGATCACGATATCATGAGCATGCTGAATTTATTCAAAGTGGTCACCAACTAGATCAATGGCCtattcttttgatttgttgttgAATACCTTGATTTCGGTTAtggaccaatcaaaatgaagGCACATGGAGAGCGGTGTCGTGTCTCTCTCCTCAGAAGTAGCGCCCTTTCGAGGAAAATGGGCCTAGTTCATTAAGTCAAAGCGGAAGGACGAGATTTGCCTCAATGTCGTGCGCGAGACCCAGTTTACCAGCTTTACGTTCAACCGTCGAACAAAAGCCAAGGACTTTTCTAGCGACACAGTGGTCGCccattaaaatattcatatcaCGCTACTGATACAAAGTAACGGACCGTCTGAGCGGTAATAATGACGATCGGAAATAACGATTagttaattatgtttttttgcaGAGAACACTGCAgtcgaataattttttatggtaGCCTTAACAAGTCCtgtatttgaattaaatttttattctgaaCAACATTCAATTTTACAAGGCCTGTTTTAAGaattaatgaagaaatgtaaaatggtttccgtgtttacatagcctgatgtaaacacttgtgAGG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13923 all species →	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF12451 all species →	VPS11_C	Vacuolar protein sorting protein 11 C terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024763 all species →	Domain	Vacuolar protein sorting protein 11, C-terminal	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23323 all species →	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005768 all species →	Cellular Component	endosome	Interproscan
GO:0006904 all species →	Biological Process	vesicle docking involved in exocytosis	Interproscan
GO:0007032 all species →	Biological Process	endosome organization	Interproscan
GO:0007033 all species →	Biological Process	vacuole organization	Interproscan
GO:0030674 all species →	Molecular Function	protein-macromolecule adaptor activity	Interproscan
GO:0030897 all species →	Cellular Component	HOPS complex	Interproscan
GO:0048284 all species →	Biological Process	organelle fusion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX47751.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.