Gene detail

Detailed information of RMX47946.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2324:247276...263089
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00005339

ATGAAGTTAGCGGTGTTATTGCTGTTTGGAATTTTGGTGATCGGTTGGAATTGTGGCTTTGCTCTAGCGAGGCAGTATGGAAGAAGAGATTCACGATCCAGAAAGCGGGAAAGAAATTCCAAACCTGCCGTGTGTGAACTTTACTCAGGTGGCGACTCTTGTGAGCCGTATCTCAAAGGTCAGAAGATTTACGTTTCAAAGAAGCGTCCCCAATCTCATCAACAGGAAATTATAGAAAACAACTATGGATTGCTGTTTCAATATGTGTCTGAAAGATGTCGAGATTATGTTCTTCCGGCTCTGTGTAATTATGGCTTTCCGCCATGTGATCTGACCCAGTCTGCAGCTAAACCCAGAAAGTTTTGTCAAGATGATTGCCTCGTTTTGAAGAATGACATTTGCAAGAGAGATTTCAAGAACGCCTTAAGATTTCCTCTAGTTTCCAGGCTCCTGCCGGATTGTGACAGTATGCCAGCTAAGGGACAGCCTGGGTACAAGAGTTGTATAAGAGTAGTACCTCAGGCTAGATTTAACAACGACATTGCTTACTCTGTTGCAGTTCCTAAGTTCAAAGTGCGCCTGGATCACAACATCACTATGTTCCAAAACAAGCCTGTCATCTTTAAATGCCGTTTGAACAGTAAGAAAATACAGGTCAACATCACGTGGTTCAAAGACGAACGGCCTGTCAATCGGATGTTTCCATCTTACAAGGTGACCAGTTACCGCTGGGGATCAAAGCTTAAGATTCGGCGAGCAAAAACGAAGGATGCTGGGATATTTGAATGTCGGGCCAAAGGCCCCGGAGGAATAGTCACTGCGCGGGCGTGGTTGAAAATTAACGGACAACTAAACACTCCTCCTCTTCCAGTTATAGAGGAGAAGCATTCGACCTCCCAGTATGAAGAAGACAATGATCCAGACACAACAACACCCAAGTCGCTTCCTCCATTCCCGGGCATGTGTGAGAAATACCGCGGCAAGGCCTGTGCACAGTTTATTGGTAATCAAAGTATCTGGGTTGAATATCCATCAGGTTATCAGCGACGCGTTGAAGATCAGTTGTCAAGAGCTCTGAGACTTATACAAGCAACTAAGCAGATGTCTGATAGGTGCAGTGAATATGGCATTCCTGCGTTATGTTTTCACGGCTTCCCAACTTGCGATACGTTAACTCAGAACTTCAAACATCGGTTGTGCCGCGAAGACTGCTTTGCTTTGTTTAAGGACATCTGTTTAACGGAACTTCAGTTCGCGATGAGTATTTCTCAGCTCAGAGTTCTGCTTCCAAACTGTTCCGCTCTTCCAAAGCGTGATGACAAAGATTATTCCTATTGCACTTCGCTTAATATTCCAGGTTTGGCTCATAATTCACCAACCAGTCCTCCTCATCCCTTTATTCAAGACGATTCTTGCTACAATGGTACTGGTGAAACATACTCAGGCTCAAGGAACGTCACGAAGTCCGGGCGCCCCTGCCGCGTGTGGCATCCTTTGAACACCTCAAGTCATAACTACTGCCGCAACCCTGGAGGACTTGAAGCACAACCATGGTGTCATGTTGGACCGGAATACGATGTGGAATATTGTGACATCAAAAAGTGCTCTTCGTTGAACGCTGCTGTGGAGACAGCCCCTAAACATGGCCATAGAGGGGCTGGCTCGGTCGCTCGCACCAATTACGTCATTTCCGCCATTATGGCCGTTTTGATTGTGGCATTCATTACAATCATTGTGTACCTAAAAATACAGCAGCGTAAGACTGCACTTGCAGATAGCGACCATGCCTCCTCTGGCTCCATCTCTAAGAGTACCCAGAGTACATTGCAGCAGCAGAATTTTGATCTGAAGCAAAGCATCAGTGAGATCAAGTCATGTGTCTTCCATCAGCAAGATCAAAAGTTACACAATGGCAAGGTGAATTTTCTTGAGGGTCTGGGTGAGGGTATGTTTGTCAAGGTGTGCAGGGGATTGCTGATAACAGATGACACGGACGACACCGGTGTAGAAATTGCCATCAAGCGGCTCAAAGCCGACGTACCAGAAGCTGCCATAGAGAACTTTATGAAGGACACGAACATCCTGGCCAATCTTCAGGACATAAACATTCTCTGTATGTTTGGATTGTCTAAAGACGAAGATCCACACTTCATGATGTTCGAGTATTTTGGTGACATGGATCTGTATCGATTCTTAGTGGACAACGCATCCAAGTTATCGGGGTTGATACCATCTGATATCTCTGAGTACGATCTGTTACTGGACTTTTCGTTGCAAATTGCGTCTGGTATGGACTTCCTCGTCGAGAATCATTTCGTTCACCGAGATCTTGCTGCCAGGAACTGTTACGTCACCGCAGACAACATAATAAAAATCTCAAACCTTGGAATCGGCAGCCACAAGTACCCCTCGGATTACTCTTGGGTGCACAGTAGCGCTTTACTTCCGGTACGGTGGATGGCACCGGAAGCGCTCAACACGTTGAAGTTTAATCATATGACGGACGTTTGGTCTTACGGGGTTTTATTGTGGGAAGTATATACCTTCGGATGCCAGCCGTTCACCGGTTTTACTAATCAAGAGGCTATTGAGCGAATACGGAATCTGGAATTACTCTCTTGCCCAGACCACTGCCCTGCCCGAATGTTCGGGCTGATGCGGGAGTGTTGGGACGAAAACCCATCAGATAGATCCCCCTTTTCCGAGATTTGTTCCCGTCTCCGAGAGTGGGCTGGTGATTCGATTGCAGAAAGCCGTTAG

Transcript

rna-pdam_00005339

CCAAATGCTCTTTCTATGAGAGACAAGTACACAAGCCGTTGTACTTTGACAATGATGAGATGCGATTGTTTAGCGAGGCCGAAATAACGCGACATCTGCTTTCTCCCAGGTTCAACCAGGAGAATCAATGAAGTTAGCGGTGTTATTGCTGTTTGGAATTTTGGTGATCGGTTGGAATTGTGGCTTTGCTCTAGCGAGGCAGTATGGAAGAAGAGATTCACGATCCAGAAAGCGGGAAAGAAATTCCAAACCTGCCGTGTGTGAACTTTACTCAGGTGGCGACTCTTGTGAGCCGTATCTCAAAGGTCAGAAGATTTACGTTTCAAAGAAGCGTCCCCAATCTCATCAACAGGAAATTATAGAAAACAACTATGGATTGCTGTTTCAATATGTGTCTGAAAGATGTCGAGATTATGTTCTTCCGGCTCTGTGTAATTATGGCTTTCCGCCATGTGATCTGACCCAGTCTGCAGCTAAACCCAGAAAGTTTTGTCAAGATGATTGCCTCGTTTTGAAGAATGACATTTGCAAGAGAGATTTCAAGAACGCCTTAAGATTTCCTCTAGTTTCCAGGCTCCTGCCGGATTGTGACAGTATGCCAGCTAAGGGACAGCCTGGGTACAAGAGTTGTATAAGAGTAGTACCTCAGGcTAGATTTAACAACGACATTGCTTACTCTGTTGCAGTTCCTAAGTTCAAAGTGCGCCTGGATCACAACATCACTATGTTCCAAAACAAGCCTGTCATCTTTAAATGCCGTTTGAACAGTAAGAAAATACAGGTCAACATCACGTGGTTCAAAGACGAACGGCCTGTCAATCGGATGTTTCCATCTTACAAGGTGACCAGTTACCGCTGGGGATCAAAGCTTAAGATTCGGCGAGCAAAAACGAAGGATGCTGGGATATTTGAATGTCGGGCCAAAGGCCCCGGAGGAATAGTCACTGCGCGGGCGTGGTTGAAAATTAACGGACAACTAAACACTCCTCCTCTTCCagTTATAGAGGAGAAGCATTCGACCTCCCAGTATGAAGAAGACAATGATCCAGACACAACAACACCCAAGTCGCTTCCTCCATTCCCGGGCATGTGTGAGAAATACCGCGGCAAGGCCTGTGCACAGTTTATTGGTAATCAAAGTATCTGGGTTGAATATCCATCAGGTTATCAGCGACGCGTTGAAGATCAGTTGTCAAGAGCTCTGAGACTTATACAAGCAACTAAGCAGATGTCTGATAGGTGCAGTGAATATGGCATTCCTGCGTTATGTTTTCACGGCTTCCCAACTTGCGATACGTTAACTCAGAACTTCAAACATCGGTTGTGCCGCGAAGActgctttgctttgtttaagGACATCTGTTTAACGGAACTTCAGTTCGCGATGAGTATTTCTCAGCTCAGAGTTCTGCTTCCAAACTGTTCCGCTCTTCCAAAGCGTGATGACAAAGATTATTCCTATTGCACTTCGCTTAATATTCCAGGTTTGGCTCATAATTCACCAACCAGTCCTCCTCATCCCTTTATTCAAGACGATTCTTGCTACAATGGTACTGGTGAAACATACTCAGGCTCAAGGAACGTCACGAAGTCCGGGCGCCCCTGCCGCGTGTGGCATCCTTTGAACACCTCAAGTCATAACTACTGCCGCAACCCTGGAGGACTTGAAGCACAACCATGGTGTCATGTTGGACCGGAATACGATGTGGAATATTGTGACATCAAAAAGTGCTCTTCGTTGAACGCTGCTGTGGAGACAGCCCCTAAACATGGCCATAGAGGGGCTGGCTCGGTCGCTCGCACCAATTACGTCATTTCCGCCATTATGGCCGTTTTGATTGTGGCATTCATTACAATCATTGTGTACCTAAAAATACAGCAGCGTAAGACTGCACTTGCAGATAGCGACCATGCCTCCTCTGGCTCCATCTCTAAGAGTACCCAGAGTACATTGCAGCAGCAGAATTTTGATCTGAAGCAAAGCATCAGTGAGATCAAGTCATGTGTCTTCCATCAGCAAGATCAAAAGTTACACAATGGCAAGGTGAATTTTCTTGAGGGTCTGGGTGAGGGTATGTTTGTCAAGGTGTGCAGGGGATTGCTGATAACAGATGACACGGACGACACCGGTGTAGAAATTGCCATCAAGCGGCTCAAAGCCGACGTACCAGAAGCTGCCATAGAGAACTTTATGAAGGACACGAACATCCTGGCCAATCTTCAGGACATAAACATTCTCTGTATGTTTGGATTGTCTAAAGACGAAGATCCACACTTCATGATGTTCGAGTATTTTGGTGACATGGATCTGTATCGATTCTTAGTGGACAACGCATCCAAGTTATCGGGGTTGATACCATCTGATATCTCTGAGTACGATCTGTTACTGGACTTTTCGTTGCAAATTGCGTCTGGTATGGACTTCCTCGTCGAGAATCATTTCGTTCACCGAGATCTTGCTGCCAGGAACTGTTACGTCACCGCAGACAACATAATAAAAATCTCAAACCTTGGAATCGGCAGCCACAAGTACCCCTCGGATTACTCTTGGGTGCACAGTAGCGCTTTACTTCCGGTACGGTGGATGGCACCGGAAGCGCTCAACACGTTGAAGTTTAATCATATGACGGACGTTTGGTCTTACGGGGTTTTATTGTGGGAAGTATATACCTTCGGATGCCAGCCGTTCACCGGTTTTACTAATCAAGAGGCTATTGAGCGAATACGGAATCTGGAATTACTCTCTTGCCCAGACCACTGCCCTGCCCGAATGTTCGGGCTGATGCGGGAGTGTTGGGACGAAAACCCATCAGATAGATCCCCCTTTTCCGAGATTTGTTCCCGTCTCCGAGAGTGGGCTGGTGATTCGATTGCAGAAAGCCGTTAGTCCCAGGAACGCGCATTATTTCCCATATTACAGCGAAGACAGGTTGGTCAAAAACTAGCCACCTGCCGTCCAACAAATCGCTGGTAGAATGTCGACATGGAGAACCTGGAGTACTgggtcaaaaaaaaaaagggtgaaGTTATgtgatgatttcctttttctgcaGTGAGTAAGTTGAATCACTGACTTCAAAAGACGCAAATGTACCCAACAGTTACTTTAACTGATGAAAGTAGAGCAATTTGCTTTGCAGCGTAATTATATATCCTTCAGTAAGGAGAGAATTATTGACTTCAAACGTTTAGTTTGCATGGAATTCATTTAGgatcaatgaaaatattataagTCTTATTTGCAGTTACCGTTATTTCGGTTGTCACGCAATCTTCACTTTCCTAGACGGATTGCGTGACAACCCAACAGCCATCCCAAGTTTGTGAATAACTTCATCTCAGGGGAAAAAGCCTTTATTCGCGCTTATTTTCCAAGGTATATTATTTATGCTATTATAAACTTATGTCCACCCTTGGCTGAGGGggcattttattttaacttaagAGTACCAAAGTAGACAAAATTCACCTTATTTGGAAACGTTTTGAGCTGGAGACCGAGTGTACATAATTAAGAGGAACATAACCGTTATGACATTAGATGCGTAGTGTGTGAGTTCTGATCTTTTATACGTCAAATGAGTAACATGAATCTCTCGAGACATCTTTTTCCACAAAAGAGTTCACTGCaacaatgaatgaattttcaaaaatcgctgtcgttgttgttttctccttttttttaaatcagttttatcTGTTACTACGGACAATGAAAAACTACATTTCTTACACTATGCgtcaataactgaaaaatgacAAGCAGAACCAAGGTGTtacgaaaatgtttttttttctatgactAATGGTATTATTAATACCGACCTAACGGATGATAATATAATTCGATTTATGACTCATTTGGCctataaattatttgattttgtagcTTGATCGCTTATAAGCTCTGTGATAATAAAGCATGTTAAAATCTTAGATCAACGAATCAGGATAAATGTATAGCGAATTCGTGATTTATGAACACGAATGTAAGATCAATTAAGTACTTTTAAAGGTTACCGACATTTTAGAAGTATTACTATTACTGTATcatattttgttgtatttaaTTCCaagaaaagtttactttttcagaattttcagtAACTGGTGGCTGTTAGGCGTTTCTTGTTTTACGCGTTCAGAATTTTTATCCGTTTCTTGCTGATAGTCTTGCgtgtggaaatgaaaaataagagcGCATttctaaaagcaaaattaattttagccTCTAAATATGCTAGTTCATCCTGAGCATTTTCCAATGATCGCCATGAGACAATTAGTGTGATCATATATGAATAGAACAGTTATGATGGCTGTACGGGTAGTGTAATGGTTCTCGCGTGACTTGGACGAGTGGCTCTTTGGCTGGTACAGAGAGTCACGCCACGAAAAGAGAAACCAGCtgagtaaaaattttgacGAAGAATGAAATAACTGTCGACGTTCTTGCCAATTCTTCAACCCTTTATACCCTGACATCAGTCTCCATATTCTCTATATATCAGTATCgatattctccatacaattctttttgtactggtaaggagaattagtatTACAAACAAATCTTCTCAGGTTGatggtcatttcctttattctcaatcatctaaatgaatgattcagccTTTCTACAGTAAGGGgaaataagatgctggtcACAGGGTTTATAGAGTTCATGAAACCTCTACATTTGTAGAACGGTGCGCATGCCGGGCAGGATGTATATCTGTTTTCATACATATTATaaataaagcaattaaaaCACAGgcagttttttcaaaacttggaATGAGGAAAATTGGGACACGAGTT

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01392 all species →	Fz	Fz domain	Domain	Interproscan
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF00051 all species →	Kringle	Kringle domain	Domain	Interproscan
PF07714 all species →	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR020067 all species →	Domain	Frizzled domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR041775 all species →	Domain	Ror-like, cysteine-rich domain	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR018056 all species →	Conserved_site	Kringle, conserved site	Interproscan
IPR001245 all species →	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR000001 all species →	Domain	Kringle	Interproscan
IPR008266 all species →	Active_site	Tyrosine-protein kinase, active site	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR020635 all species →	Domain	Tyrosine-protein kinase, catalytic domain	Interproscan
IPR036790 all species →	Homologous_superfamily	Frizzled cysteine-rich domain superfamily	Interproscan
IPR050122 all species →	Family	Receptor Tyrosine Kinase	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR038178 all species →	Homologous_superfamily	Kringle superfamily	Interproscan
IPR013806 all species →	Homologous_superfamily	Kringle-like fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24416 all species →	TYROSINE-PROTEIN KINASE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004713 all species →	Molecular Function	protein tyrosine kinase activity	Interproscan
GO:0004714 all species →	Molecular Function	transmembrane receptor protein tyrosine kinase activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007169 all species →	Biological Process	cell surface receptor protein tyrosine kinase signaling pathway	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan
GO:0010976 all species →	Biological Process	positive regulation of neuron projection development	Interproscan
GO:0014068 all species →	Biological Process	obsolete positive regulation of phosphatidylinositol 3-kinase signaling	Interproscan
GO:0017147 all species →	Molecular Function	Wnt-protein binding	Interproscan
GO:0033674 all species →	Biological Process	positive regulation of kinase activity	Interproscan
GO:0043235 all species →	Cellular Component	receptor complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX47946.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.