Gene detail

Detailed information of RMX48089.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2315:110994...113544
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00002593

cagatactgaaATTTTGTCCAATCACACGAGGATCAATAgtttattttacctgtcaaTCACTAGCCATAACATTAcatcactttgttttgatcagTGCATAGCGAAGTTTTCCACGTACACGTACATAAAGGCGCCCTCTCCTCgcgaaagaaattttgtttttctaataaTTCCTGATTGTTGATAAGCCGTGCATGGCTGTCGTCTCGTCCTGTCATAACAAAAGCAATACATACGAAGAGACCACAGCCGCAGAAATCGACGGATCGACCGTACAGGAGGGAATGAAGTATTCGTGGTCTGCTACTCGTCGGACCAAACACGATAGTATCTCTTCGGTTGATAGCAATTCCTCTTCTGATTCACCCTTCTTAGACTCCCTAAACGAGAAATCTTCAAAGATGAACTCAACTAAAAAGCCATGTGGTAAAAAGAGAGGCAGAAGACCCTCTAAAATCGACTTGGAAGCAAAACTGGAGCGAAGTAGGCAATCTGCCCGAGAGTGTCGCGCTCGAAAGAAGCTGCGATACAAGAGCTTAGAAGATATGATCGCTGACAAAGAAACTTATGTGTATAAACTTCGAGAAGAGCTCGAAATGtacCGAAGATGGTGCAAGGCTGTCGATAAGGGAGCATATCCTACCGAACTACTGGAATTCTTAAAAGACAACGCCGAGGGCAGCAATTGAAGTTGGCAGACCGTGATGGGATCCTAGTCTGACCGCTAATTCAACGGATCCAGGCCAACACTAAAGGAAATTCCTCAACTCCATGGAATTTCAACGGATGTGGTCGCAATTCTCTGCCATTAGATGCTTTTGATCCTTTAGGCTGCCTTCGTGAACTCAGGAATTGTAATCTTAATTTCAAGGCTTTGTAGGATCATTCAAGACCAACTTACAATTAGTCCATGTAAAGAGCCCTGACGTGATGTTTAGCGGGCGCTGTCAATAAGCTTAAGATTGGCATAATTATTTGAACTCTTTCTTAGAGTAATTATTGTACGTGTCCAGATTAATATCCCCACACACCCACTAAAagatcaaaaatttaaaaggtaGAGAAAGGGGTCCCCAGGTAGGGGGTTGTACCTCTTTGTTAGGCTAATTATGATGTACACATCTAGATAGACATCCTTGCTCGACCACtgaaagattgaaaattttagagGTGGAGAGAAGGGTCCCTAGGTAGGAAGTCAAAAGACTACTGTAATTTCTGGGGAAAGGGGATTGCTGAAGAATTCAATACCTTATCTGGCAGGGTAATGCATAATTCCTGggaaaatacacaaaaaattacatttagtGTGGCCACTACAGCTGTTATTGTTAGATCTCTTTGGGCCTTgagtttaaatttcttttccactaAATATGCTTGATTCCaaccaaacattttaaagaataggagacaaaaaaaacctggTTGTCTCTTAGGAggttttgatgaattttcaaCTGATATCAGAGCAGTGAAGGTAAATGTTTCTGTAGTGTCGAAATGCATGGTGTTCAcagataataaattaatacaaaaGAGATCTAAGACACCATAAGTTTCAGTAGAATGACTAGTTTTGATGGGACTGATAACGTAGAATGGGTTTCCCAATTCCTTTTGCTAAGATGCGTGGCTTTTTTCCCCTCATAGTTAGCCCGAATTGAATCCAAAGGAACTCTTTCCAAAATCAGAAGTTCTAAATTACATGTCAACATTTTGTAGGCAGTGACACTATCAAACACTGTCAAgttgcccttttttttttttttttaaaatgatatttaggCAAAGAACGTGTAAGAAGTGTTTATTGATTTATTCCATGTTTATGGTAGCACAAAATTTGTCtacaaatttcattaaagTAGTTTAACTATTCTaaagttttaaagataatttttttaagctgtcTGAAATTGATTCTTATTTCAAGACTTCGAAAAAAACTCAGGAAATTACAAGTGCATAATATTTGTGGCTGGGAACatcagttgttgtttttttctctatagccattagaaataataatttaatgtataaatttgtaattcttttgatttccatttttgtttcaataaattgcAATATTTACAAACACATCAACATGTAAGTATCATACATTCTAACCCTGTTGACCCCAGGCAAACTTGACTTATCCCTCCC

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07716 all species →	bZIP_2	Basic region leucine zipper	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046347 all species →	Homologous_superfamily	Basic-leucine zipper domain superfamily	Interproscan
IPR039250 all species →	Family	CREBL2/REPTOR-BP	Interproscan
IPR004827 all species →	Domain	Basic-leucine zipper domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21051 all species →	CAMP-RESPONSIVE ELEMENT-BINDING PROTEIN-LIKE 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX48089.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.