Genomic Location: SczhEnG_2252:52412...55814
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families
| CDS |
| pdam_00019594 |
| Transcript |
| rna-pdam_00019594 |
| Protein |
| RMX48570.1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005730 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF14360 all species → | PAP2_C | PAP2 superfamily C-terminal | Domain | Interproscan |
| PF00536 all species → | SAM_1 | SAM domain (Sterile alpha motif) | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR045221 all species → | Family | Sphingomyelin synthase-like | Interproscan |
| IPR013761 all species → | Homologous_superfamily | Sterile alpha motif/pointed domain superfamily | Interproscan |
| IPR025749 all species → | Domain | Sphingomyelin synthase-like domain | Interproscan |
| IPR001660 all species → | Domain | Sterile alpha motif domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR21290 all species → | SPHINGOMYELIN SYNTHETASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005887 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0016780 all species → | Molecular Function | phosphotransferase activity, for other substituted phosphate groups | Interproscan |
| GO:0030173 all species → | Cellular Component | obsolete integral component of Golgi membrane | Interproscan |
| GO:0030176 all species → | Cellular Component | obsolete integral component of endoplasmic reticulum membrane | Interproscan |
| GO:0033188 all species → | Molecular Function | sphingomyelin synthase activity | Interproscan |
| GO:0046513 all species → | Biological Process | ceramide biosynthetic process | Interproscan |
| GO:0047493 all species → | Molecular Function | ceramide cholinephosphotransferase activity | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K22697 | SAMD8; sphingomyelin synthase-related protein 1 | - | Membrane trafficking | ko04131 | deepkoala |
Genes whose expression across the transcriptome samples of Pocillopora damicornis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Pocillopora damicornis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
