Gene detail

Detailed information of RMX48634.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2250:107438...114288
NR annotation: no NCBI-NR hit recorded
Species abbreviation PDAMI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00007993

GTTTCAACAGAATAGGACTCTTCGTGACGAGAATATAAAGCACTTTCTCGCTTCAAGCcacagtttattaaaaaaagaagtactTTGGCTCGTCATAATGGGGTCTGAAGTTGATTGTTCCGGAGTATCGAGAGCAGTTTGGCTTGTGAAGGTACCAAAATATCTGTCTAACATTTGGATGGACAACACTGATGCTTCTGGAATCGTGGGAAGTCTTCAGATAAGCAACAATCCTCAGAGAAATGAGGTGGCATTTAATCTGTCAGATGCATTGGCAAATAAGGAAGACAACTCCAACAAAGATGGCCAAGACAGTACAAATAAAGACGGAATAGGCAGCTTCAAGGTTCCCAGGGAGTACAAGATGGTTTTATCTAAAGTCGAACAGTCAATGGGAGTGTTTTCAGAAGGACCAGGAGGTCAGGTCACTATTGAAGGAGTACTTGTACAGAAAGCTGACTGTCGGCCAATTCAGCCTAGTGCTGACTACCtgagtttgaaaaaGAGGACAATtgttaataaaagtaaatcaGGACGGCAAGCCATACAGGTTGACCGTGTTATTAAATATCGTCCAGTGTCTGACCACAAGGCTAATATTGAacacgaaaagaaaaagaaagaagaaggaaagagagCTCGAGAAGATGAAGATGTTGTCAAAGCGTTGCTTTTCAATGCATTTGAAAGACATCAATACTATAACTTGAAGGACCTCATAACTATCACAAAACAACCAGTGGCATATCTAAAGAGTATATTGAAAGAGATTGGACATTATAACACGAAAAATCCTCACAAAAATATGTGGGAGTTAAAGCCTGAGTACAGACATTACAGCAACAAGAACAGCGATGATAATGGAAAGGAAGGAACAAGTTCGTAAACAAATTTAGCCATTTAGACTCACGTGCAAGCGACAAGAGGTGAGGGCCCCAACAGCGTAGATGCAACGGGATCTGAAAAAAGCTCAAGAGACATCTGAAGTATGGGTAGTTGTTTTCCGTTGCAGGCCTCGTCTACGcagtgtttatattttaaaagggaACACAAGTTTTCCGTTTTCACAGGAAAACGGATTTTTAAAACGTTATTGTCAACTCTTCAGTGAGCCCACCGGCGGCTCGAACGCTTGAATGTACCTTCGAGCATGCCCAGGAATCATTACAAAGAGCAGGGACTTTCGTAATTTCAGAACGTGCCGTTTTCAGTGGATAATTTGTCCAGTTTAGTCTAGGCAATACGGCCAACcgaataaaaataaaggtgTGTTTTCAGATGTTTTAATTGCAGCGGACTTCAACGACATCGTATCCAATAGAAGAAAGAGGGAAAGTTtctgtggtgctgtgtcggtgggggggtttatttaattttattaagtGACTTGATAATTAAAACTGGCCAAGAGTtggtaaagagtttctaaagctgaagttttgaGCGATTTCTGCTCGTCAGAGTGAATGATTGCATCCATAGATTCACTTTGCGAATATCTCCCATTATATTTTAGACAGCCTTATAATCAGTGCCTCTTGAGCGCACGTCTAGTTGACTCGCTTTCTCGCCTAAAATGTTGCTTTACCTTCTAGAAAGCGTTTGACAAATGACTCTCGATTCTGATCCACGTTGATGAAGGATTCTCAATGCcttgttgttttgatattgtgttACAACTGTGTACAAATTATGTACACTGCGAATTGTGGATCACTTTGCTAAGATAGTCAAACTCttacaaggaaacaaagttcGAATTACAATGACCACAATTGgtgaaaaaggttaaaatattttaaatcaattaccTTGACTTCATTGTAAAGTGTCTAATGACACAAATTATCGATAAATTCACAGTTTTACACAGCTTTAGTTAGTACTACTTTTAAATATACGACTTAACTACTAGAACAACAGTAACGGACTCCTCTATTGTCTGTCTCATTTCATCTTTCAGCAGTAAATCTAGAGGAACGGGTTTAGACTTGAATTTAGGAACGCAAGGGATGCGTTGCATCTTAAAGCAACCTTACCTGATACGTCACTGagggagaaaagaaatacTAAAGGTCTCACTAAAGCTTGTGGAAGATAACAGACGACCATAATATGTAGACTGACGGTGCTGCACATACAGTTCTAAAGTACTTTGCTATGTTAAGTAGAGTTCCAACTTCGTTCGCTACTCTTGAAGATTACCTTGTATGTGAACTTAATGACTGCAAAGGTTTAGAAAGATCTTTATGTAGCAACAAGCCCATATTGTTCAACAGATTATGACATTTAGAGGTACAACTTTTGAAACCactatgaaatttttttctgtccgAATGCTATCCATAAGAGATAAAGCCGCCCATAGGAACCAAAAACTGCGTGAAACTTTACTGACTCGCCTCAGTGTTACAGCCTGTCTGTG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17683 all species →	TFIIF_beta_N	TFIIF, beta subunit N-terminus	Family	Interproscan
PF02270 all species →	TFIIF_beta	TFIIF, beta subunit HTH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR040504 all species →	Domain	TFIIF, beta subunit, N-terminal	Interproscan
IPR003196 all species →	Family	Transcription initiation factor IIF, beta subunit	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR011039 all species →	Homologous_superfamily	Transcription Factor IIF, Rap30/Rap74, interaction	Interproscan
IPR040450 all species →	Domain	TFIIF beta subunit, HTH domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10445 all species →	GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005674 all species →	Cellular Component	transcription factor TFIIF complex	Interproscan
GO:0006366 all species →	Biological Process	transcription by RNA polymerase II	Interproscan
GO:0006367 all species →	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03139	TFIIF2, GTF2F2, TFG2; transcription initiation factor TFIIF subunit beta	EC:5.6.2.-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.