Gene detail

Detailed information of RMX49088.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2175:103760...115791
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00003874

TTTTGGCTAACAGAAAATTCAATCGATTTTTTAAGTGAttttattcctgttttgtaaCATCGACAGGCTGGAAGACATctgtatcaatttttttccatttggatCTTACATAGGTCAAAAAAGGGACGATTTTCAGCTCTTCATtactttttaatcttttcagTCCTGCTTCATGACCCTCTTCAGCACCGACATTGTTCATCTTTTTTCAAGACAAAAATGGTGCATCAGCGTATTTTCAACAAGCCTTCATtcacaaagaaattgttttaatattggTAAACACGGCCAGGATGTGGGGAATATAATTAGCacgcaatgaaaaaaaaatcgaaatgCACCTCATGCTGATTTCATGTGCACGAAAGTATAAATATGTCGGATTTTAACCACAAAATGTCTGCCTTTGTGCCAATTTTTTGCTGCATcatcgcaatttttttccttttttgattcATGACACGATCATAATGAATTCATAAACcgcaaaggaaaagaaaagggagAACGAAATAACAGCGTCATGAATAgataatgaattatttatcgTCGTTTCTTTGTTCAGTAGTGTTTAGTCTGGCGCTGTTGGTcgtcaataaaataaatacttctTGAAAGAGCGGTCACACGAAAGtcaaaaatgttctcttttaCCCTCAAGGGAATATTCCttgacatgaaaatattgCCTAATACAGCAGTAAACACCACGGGCGACGATTAGAATTTCAATCTTTATAAAATGCCTAAGGACTAAGACGTTGGTTCTCTTTGATGTTGACTGGAACTAAACCGCAAAACCTTCCCAGCTAGGGTAGGGCTGGGCCTTTTTTAAGACCCCTTGTTCCCTTTTGACActtaaacatgaaatttagTGATTTGAACCACGGAGTTagtattttctgaaaatactCGGTGAAGAAGTAAATGAAGTGAAAGAAATTCCTGagtggaatttaaaaaaaaaaatatcaaaaggaACGCAATAAgtcaccctcccctcccttgtAACGATCAGCTCGCATACCAGACGGAACATCAGAATGAGGCTTCCGGCCAATCGTCTGGGACAAAGATGATATGAAGGCAGTCTGAGTTTTGAACATTTCTCGCCGGAGGCACGATCGAATTAGGTTAATGTATTTGGTTCGTGCTATGTTTCACCAAAAGCGACCTAGTCGCATCGAAACTTTCAATTTCACAAGATGAACACACAAGATACACGAAGTCAACAGATGTTCAAAATTCGTCGAACTACTCTTGGATTTGGTGTTGTTCAAATCCTCTTAGGCGTCTCATTAACTGCGTTGTCTTTCGCAGCTTTCGCCTTCACTTCTTCGGATAGAATACGTAACGCTTGTCCTTACTGGGCTGGATTCGCGGTTTTTTGGAGCGGTGGTGTAGGTATAATTGCTTGGAAGCATTCGTCTGTGATGTCGaTGAGTTTGTTCACATTCTTCTCAGCGGTATGTGTGGTTCTGCAGATGATTGGTACAATTCTAACAGGAGATGCAGGAGGCTTGCTCAGATCACTTGTCAtgtgtgaaaaagaaatttcagggCCTCGCTGCAAGTGCTGTGAATCTGAAATGGCCTGCTATCAAGGTGTGGGAGTGGTGGAATTTGAGGGGGTGCAGGACTGCAGTGTGATAACAGGACTACTTACTGGGTTGTTATATGGACTTTGTGTTCTAACCATCTTTGGAAGCTTACTGTGCTTCATTGCAACTATCTTGGGATGTACTGCAGTAGCACGTCAAACAAGTCGACATCAGgGGCTTTGTGGTCGCCATAGTTCAAGGAGGTCCCATGCCAGTAGGAACCCAGACAGCTACACTTGGGCTCCTTGTTCGACAGACCTTACAATGTTGCCGCCCTACGCGCCACCGGTATATCACTCCGTggataattttcaagaatatGGTCTGTCGTCATGCATAGTCCCGCCTCCAGTGTTTGACCCTACTGACTTACCTCCACCTTACTCATCACAGAATCCTTCCTTAGCCGATTCTCAGAACTCTTTGACTTCTCCGGAGTCTTCAAACAACCTACCACAATCTTCTGAAACGGACGTACATTTCCAGCCTATGCACTCGAGGCATCAGGCATTAAATTACGACGAGGAACTCAGGGCCCTGCCTTCAGCCACCCTTAGCATCTCTAGGGAAGGTTGCAACCTCCAAGATAGAGGTGTGCCTTGGAATGGCCACCTCAATGCTATGTCTGACAGTAGTGACCTTCTCACAGCTAGCGCTTCATCCGATTTGTCAAGCAGCTGTAATAGGTGCTCTTCTGAACAACAAACGAATGTTAATGACACTGATATATACAAGACAATTCTTATTGGAGCCACGCCTTTGCTTAATCATCCTGCAAAGTCTAGAATTCAAGCGGAGTTCTCCGAACTAGTTGAAGCTTCCTCAGGCTCAAGGAGGCGAACATCGTCGCTACAGGAGACATCAACCAAAGATAGTGTTCACGCTCGTAATGTACCGGCGGTTTCTACATCTTCTGCCCGAGGGACTCCTATCTTATCCCTGCGCACCCGGAGTAGATCTTTAGGTGAAAACGCTATCTATGTGAATTCATTTGAGGTCATGGCTCGACCTCCGCCCAACATGCGACTGCCAGTTGATGAACAGCTCAAAACTTGTAATACTGCTAAGCCCGTCACCACCAGAAACTCCCATCGacttacaaaaaaaggaactcCGCTCAAAGGTGATCCTTCGAAAGATCACATCAGCAGTCGTAGCGAGCAGAGGAAggacaaagtaaaaaaaagacgacGAAGGCATTCGCATGGCATTTCGAGACACAAGGAAAGATGGAATGTTAACTGTGAATCACTAAACTCGCAAGTGAATCGTGGAAACGACGATTCAGTTACACAAGGCAAAGAAACGGTAGTATGAAGATATGTGTTAGTGGCTTAGGCCTTAATTAGAAGGTAGGTTGGGTTTGGAGATATCAGGAAAAATGACAGGGGTGATCTTGGCAGCTTAACGAGAGGGGAAAGTGTGTGGATTGGAACCAGATATAATAGACTTGTCCCCGGAAAATTACCATACGAAAGACATTAATGGTCATTTAATATCCTTTTTCCCCGATAATAAATATACTTTGGTCCATTATCATTCTAGCAATAGCTCCCCTCCCTTTCCgctcccctcccTTCTTTACCGAAAAATAAGCAAGAAAAATGAGCATCGAATCACGCCAAGCAAAGATGGTGTGGTTACTCCTAACGAGATCGAGACATGAAGGAACATTTTGAAGTGTAATGTGAATTGGCTTCGGAGGTGTTTGTCCAATGCATTTCGCAGAGGACTAGCTTTCTCAATCACTTCAGtgataaataatatataagcaaaagaaaatagaggTTAACCAAGACACAGAAACATTGATGTACGacatttttgtaatatattttgcATGTTATGTATTCTTTTTCCCAGTCTCCAGTGGATACTGAAAATAGAATTGTCAAAGCTCTGATTTTCTTAGGTTACTTAATGTGAAGACTAAAAGGATGCAGAACCAGGCAGAAATCTTATTATGGTTTTTGCGTATTTTCTGAATCCAATATTCCAGAAGGAGAACAACTAGCTTTTTTCAATGTAACTTCCATGATCAAATTCGCCATACTCGCTTATCGCGGCgataaaatttcttctgagttagttgggagaatttagCGGTATATTATGATGATACCCCACAAGGTGATTGAAACTTTAACAGTGTATTGATAATTTGAGGAGGATGTACATTATAATCCGGGTGTCACAGGCTTAAGGGAAAGACATATCATGCTAGGACAGTATATAGCAATTTCCCAGGGAGTAATCCTTTAAATGGCTTGCACAGGAGGGCTCCGCCTTAAAAGAGTACCCTTCTCAGGCTCCAACTGCGCCAAAGAGTACGAAAATTATCATTTAGGCATTCATAAGGGCTTTAGATTTTCTCCAGAAATATCGTGCGTACGCGTCATTTGAAGGGCTCTGAAAAAGTGCTGTTAAGCTTGCTTGTGAAAGAGGTATGATTATGCTAAAGAAGTTATATTTTCAGAGGAATCGGTTTATAAAAAGAGGACGATCCTTGCACCTCGGGGAGGGGGCCTCCCCATGCAGAAATTTAATACCCTACTTTCCCATTCCACTCCCCCCTCCCGGTGCATTTTATTTGCCGAGGGTTTAAGAATCAAAGGCCATTAGGTTAGTTTTTGTCCAGACTGGAGTTACAACAATATTCCTGATACTTctcaagaaacatttttttaaataaaaaaagagataaagtAAATCtctaatttttgttataaagaTGTTGACATTGAAGTGAAAATACGTACTTATGTTTATGTAGATGTGTAGTTcagatttaaaataacatgatCGCAATTTAAGTGCATCTAAtgccatttattttaatgatcagTGATTCATCTATTTATAGTGACTGTTATTGATATAGTCTGGAAGGACTTTAAAATGATAACGATATGACTTTTGACTTTGTATCAACTAAATAAACTTATTATTCGGAGAGGCAGTTTCACTTTGTTCgattttttacaataaattataGTGTCACATATACGTACCTCGATCTCAAACGttttaaacttcaaaaattgtacattttgTGATGATGACAGGATTTCGTTTGTTGATAAGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04103 all species →	CD20	CD20-like family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR030431 all species →	Family	Endosomal transmembrane epsin interactor 1-3	Interproscan
IPR007237 all species →	Family	CD20-like family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR17615 all species →	PROTEIN FAM189A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13871	SLC7A14; solute carrier family 7 (cationic amino acid transporter), member 14	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.