Gene detail

Detailed information of RMX49196.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2160:491221...494175
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00005860

ATGACAGTGACCCATATGACCACCATCATTTTTAAACGTGAATGTAACATGGCGGCTAGACAGAACACCTCTGGAAATGAGACGATATTAGTCAGCTCTGGTGATGAAGATGAAGATGAAGACGTCGAGGGACTTTTTAAAAAATTTGTTTCCAAAGTTGAGAGATGTGTAGACCAAAACGATGTGGTGCTTTTCCTGAAGCTGAAATTCGCGGAGGCTCGGTCCGAGTTCGTGTCATCCGTGAAATTCAAGAATGCTCTGAAATGGAGGACGAGAGAAATGAACAAGTCAAATGGCTACATTTATACTGGAGATATTTGTAAGCTTCTCTTGCCAGATTCAAAGGTGGATAATGTTGACGAAAAAGCCAATGATGTACATTTCGCGGGAAATGGACAAGCAGTGAGTCCCTTCACTCGCGTGGAAGGCGACGTAAACAGAGCGATCGAACTGACTGTAGTGGACAGTGAACCAGGCTATCTCACAACAGATAAGGGGGCGAAACTTCCCGAGACTGCTGTCCCCTCAACGAGCAGCACAAGCTCTATTCAACCTCCTTCAAGTGGTATTGTTAATGGACGAATAAATGAGAAGAAAAGACAAATGGCAAGTCCTTCGAAACAACCGCTTACCCCTAGAAAACGAAAGAAGCTTGTCAAAAGAATGGAATTGAAGCTTAAGAACCTGGCAGAGAGAATTCAGATTTTAAATCAAGCAGAGTTAGGTTTGGATGAAATGGATATGAGTGACAGTACGTATATTCAAGAATGTCGTCTGAAAGAGAAATTTAATCAAATCTGGAACAAGATCTGTAGAGTGCAGGGAAAACCCCCCAACACAGGAAGGGTAACAGAAAAAGAAGTCAAGTGCCCAACCACGGGCCTACCAGGGATAGACCATGCCATAAAAAAATTCATAAGGAATAAGAAAGGTCGTTTTCCTGATAAGTTTGACATCAGTAATGTAATACAAGAAGCAAACAAAAAGTATGGCTTGAAACTGTCAACACAAGCTCTCAATGAGATCAGTGATGAAGTGTTCATGTGTATAGGTAACATTCTACAGAAGAGACGGAAGAGAGATTTTAATTTCAATTTTGGATGTCACCTCACAGATGATTGTAATGCCAGTAATGACCCTGCCATAAATGACTTAGCACTTCGCAAGAAGTTGGAAGAAAACAAGAAGGTCAACAAAAAGAATCTAGATGAAGTTTTTACAAAGTTTGTGCGCTATGGACGCATGAAAGCTCATGATAGCACTGGTACCTCAAGCAGCAGTGATGTCGAGGAGGAAAGACCTGATAAGAGTGACAGAGTCACAATGAAAAAGAGATTCTCTTGCATTTCTGTCACACAATCATCAGATTCTAGTGAAAATGAATGCAATGACTTTGGGTTGACAGAAGGTATGAATGACAGCACAAAAAAGATCAGAAGGGAGGAAGGGTTTGATGACGATGAAAGTGACTTGCAAAACTTTTCCATGAAGTCTCCTCATCAACTAAGAGGAAAGAAGAAAGAAACAGAAACTGAGACTATACTTGACATAGAAAACAATACTCCATTGCAATCAAATGATAGAAATCTGTGGGAAAACTCTGCTATTGTTGAGTTACCTACCTCAGCTCTGTCTGAATGCAATGAAATTTGTGTGAAACACAAAAATATAGTGAAAATGGATGGTGCCTCTCAACCCTCAGTTGTTGAAATTTTGGAGCAAACAGGCACCAGTGGGAAAGAGAATACATTACCTGATCAGCCTGCTGTTATAGCACCAGAAAAGATTAACAACAGTGCAGTATCCACAAATCAGCAACCTAACGATTCTACCCCAAAATCAGATCGTTATATTGTCTCTGCAATTAAGGAAGTTCCAACAACCGAACCAGTAGAGACTTCTTCCAAGTCTTCAGTGACTAATAATTCCCCAAGTCATGTGATATCAAGTGTTGATGATTTGTCATTGCAGGAGACTAAGCCTTCCTCCAGTACAAAATCAGATTCTTGTGTTATCACTGTTGATAAGGAAGGTCTGACAACTGAACCAGAAGAGACTTTTCCTGAATCCAAAGAGAGTAGTACTTCCTCAAGTCATAAAGTATCGAACATTGACAATTCTTCTTTGCATTTGACAAAGTCTTCTCTTTTCAGTGTTAAATCAGATCCTACTGTTATCACGTTAATTGAGGAAGAGCTAGCTGCTAAACTAGTAGAGACCTTGTCTGAATCTCAAGAGACCAGTACTTTCCCAAGTCAAGTAATCTCCAGCTCTGAAGATTCTTCAGTGCAGGACACAAAGTCTTTTCTAAGACCTGTACTGTCAACTATTAAAGATTTTGATGATAAGGCACAAGATGTGATTGGCAATGTAACTGGTTCTTCTTTTCATTCTGATGTTGACGACGGAGAAGTTGTTGCGGGAAAATCTCCAAAGGAAAATGGTTCTCATGATGATGCACCAAAGTCCACTCCATCTAGGAAAAGAAAAAGTGTAAACTTTACTTTATCACCTCTTACTGTCAATATTAAACCTATATCAATTAAAGGTCACAGGATTTTCCCCAAGAAGAGGAAAGCAGAGAATGGATTGCTTGATTTTGAAAGTCCACTGAAAAGTTTCCGTGAAGCGACTTTGGAAATTAGAGGAAATCAGCCATCTTCCTCTTGTAACCTCCCAGAGGCCATAAACAGTAAATTAAATTTTGATTGCAACAATAGATTATCAAAAATTGAAAAGGACGAACCTTCTGTTTCTTTTGCAAACAGCCCACCAGACCAAAGTATCAATAGTGATAAGTCTGCTATTGAAGCAACAGCATCAAAGAGATTGCTGCTTTCTTTGAACAAGACAGGAAGAAATTCTCCCATCAAGAAACAGGAAACTTCTGAAAGGACAGTTATCTCCATTGTACTCTCAGATGATGATGACAGTGATTGTGAAATAATCAAGTGA

Transcript

rna-pdam_00005860

ATGACAGTGACCCATATGACCACCATCATTTTTAAACGTGAATGTAACATGGCGGCTAGACAGAACACCTCTGGAAATGAGACGATATTAGTCAGCTCTggtgatgaagatgaagatgaagacgTCGAGggactttttaaaaaatttgtttccaaagtTGAGAGATGTGTAGACCAAAACGATGTGGTGCTTTTCCTGAAGCTGAAATTCGCGGAGGCTCGGTCCGAGTTCGTGTCATCCGTGAAATTCAAGAATGCTCTGAAATGGAGGACGAGAGAAATGAACAAGTCAAATGGCTACATTTATACTGGAGATATTTGTAAGCTTCTCTTGCCAGATTCAAAGGTGGATAATGTTGACGAAAAAGCCAATGATGTACATTTCGCGGGAAATGGACAAGCAGTGAGTCCCTTCACTCGCGTGGAAGGCGACGTAAACAGAGCGATCGAACTGACTGTAGTGGACAGTGAACCAGGCTATCTCACAACAGATAAGGGGGCGAAACTTCCCGAGACTGCTGTCCCCTCAACGAGCAGCACAAGCTCTATTCAACCTCCTTCAAGTGGTATTGTTAATGGACGAAtaaatgagaagaaaagacAAATGGCAAGTCCTTCGAAACAACCGCTTACCCCTAGAAAACGAAAGAAGCTTGTCAAAAGAATGGAATTGAAGCTTAAGAACCTGGCAGAGAGAATTCAGATTTTAAATCAAGCAGAGTTAGGTTTGGATGAAATGGATATGAGTGACAGTACGTATATTCAAGAATGTCgtctgaaagagaaatttaatcaaatctGGAACAAGATCTGTAGAGTGCAGGGAAAACCCCCCAACACAGGAAGggtaacagaaaaagaagtcAAGTGCCCAACCACGGGCCTACCAGGGATAGACCAtgccataaaaaaattcataaggAATAAGAAAGGTCGttttcctgataagtttgacaTCAGTAATGTAATAcaagaagcaaacaaaaagtatGGCTTGAAACTGTCAACACAAGCTCTCAATGAGATCAGTGATGAAGTGTTCATGTGTATAGGTAACATTCTACAGAAGAGACGGAAGagagattttaatttcaattttggatGTCACCTCACAGATGATTGTAATGCCAGTAATGACCCTGCCATAAATGACTTAGCACTTCGCAAGAAGttggaagaaaacaagaagGTCAACAAAAAGAATCTAGATGAAGTTTTTACAAAGTTTGTGCGCTATGGACGCATGAAAGCTCATGATAGCACTGGTACCTCAAGCAGCAGTGATGTCGAGGAGGAAAGACCTGATAAGAGTGACAGAGTCACAATGAAAAAGAGATTCTCTTGCATTTCTGTCACACAATCATCAGATTCTAGTGAAAATGAATGCAATGACTTTGGGTTGACAGAAGGTATGAATGACAGCACAAAAAAGATCAGAAGGGAGGAAGGGTTTGATGACGATGAAAGTGACTTGCAAAACTTTTCCATGAAGTCTCCTCATCAACtaagaggaaagaagaaagaaacagaaactgAGACTATACTTGACATAGAAAACAATACTCCATTGCAATCAAATGATAGAAATCTGTGGGAAAACTCTGCTATTGTTGAGTTACCTACCTCAGCTCTGTCTGAATGCAATGAAATTTGTgtgaaacacaaaaatataGTGAAAATGGATGGTGCCTCTCAACCCTCagttgttgaaattttggaGCAAACAGGCACCAGTGGGAAAGAGAATACATTACCTGATCAGCCTGCTGTTATAGCACCAGAAAAGATTAACAACAGTGCAGTATCCACAAATCAGCAACCTAACGATTCTACCCCAAAATCAGATCGTTATATTGTCTCTGCAATTAAGGAAGTTCCAACAACCGAACCAGTAGAGACTTCTTCCAAGTCTTCAGTGACTAATAATTCCCCAAGTCATGTGATATCAAGTGTTGATGATTTGTCATTGCAGGAGACTAAGCCTTCCTCCAGTACAAAATCAGATTCTTGTGTTATCACTGTTGATAAGGAAGGTCTGACAACTGAACCAGAAGAGACTTTTCCTGAATCCAAAGAGAGTAGTACTTCCTCAAGTCATAAAGTATCGAACATTGACAATTCTTCTTTGCATTTGACAAAGTCTTCTCTTTTCAGTGTTAAATCAGATCCTACTGTTATCACGTTAATTGAGGAAGAGCTAGCTGCTAAACTAGTAGAGACCTTGTCTGAATCTCAAGAGACCAGTACTTTCCCAAGTCAAGTAATCTCCAGCTCTGAAGATTCTTCAGTGCAGGACACAAAGTCTTTTCTAAGACCTGTACTGTCAACTATTAAAGATTTTGATGATAAGGCACAAGATGTGATTGGCAATGTAACTGgttcttcttttcattctgaTGTTGACGACGGAGAAGTTGTTGCGGGAAAATCTCCAAAGGAAAATGGTTCTCATGATGATGCACCAAAGTCCACTCCAtctaggaaaagaaaaagtgtaaACTTTACTTTATCACCTCTTACTGTCAATATTAAACCTATATCAATTAAAGGTCACAGGATTTTCCCCAAGAAGAGGAAAGCAGAGAATGGATTGCTTGATTTTGAAAGTCCACTGAAAAGTTTCCGTGAAGCGACTTTGGAAATTAGAGGAAATCAGCCATCTTCCTCTTGTAACCTCCCAGAGGCCATAaacagtaaattaaattttgattgcaacaatagattatcaaaaattgaaaaggacgaaccttctgtttcttttgcaAACAGCCCACCAGACCAAAGTATCAATAGTGATAAGTCTGCTATTGAAGCAACAGCATCAAAGAGATTGCTGCTTTCTTTGAACAAGACAGGAAGAAATTCTCCCATCAAGAAACAGGAAACTTCTGAAAGGACAGTTATCTCCATTGTACTCTcagatgatgatgacagtGATTGTGAAATAATCAAGTGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20920 all species →	DAXX_hist_bd	Death domain-associated protein 6, histone binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038298 all species →	Homologous_superfamily	Daxx, N-terminal domain superfamily	Interproscan
IPR046426 all species →	Homologous_superfamily	Daxx, histone-binding domain superfamily	Interproscan
IPR046378 all species →	Domain	Daxx, histone-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12766 all species →	DEATH DOMAIN-ASSOCIATED PROTEIN 6 DAXX	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0042393 all species →	Molecular Function	histone binding	Interproscan
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0003714 all species →	Molecular Function	transcription corepressor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006334 all species →	Biological Process	nucleosome assembly	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0016605 all species →	Cellular Component	PML body	Interproscan
GO:0042981 all species →	Biological Process	regulation of apoptotic process	Interproscan
GO:0045892 all species →	Biological Process	negative regulation of DNA-templated transcription	Interproscan
GO:0050681 all species →	Molecular Function	nuclear androgen receptor binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX49196.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.