Gene detail

Detailed information of RMX49239.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2160:412658...421742
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00005852

ATCTTTGTATGTCCTCCCCGTTTTGGATTATTTTAAGCACGATATACTTTGCCTTGTTAAAGGCAGTTAAAAGCTTTTCTTCGTGACTTTTAATTGCGAAATGGAAAGTCTGTAAGTATCTGCTCAGATTTCTTGATCAAATTAAGATGTGTCAAGGCCTGGCCACGGAGCCCGAGCTTCACAGCCACCACCATCATGGTTTCGAAGTTGTAAACATGGATTTGAATGGGGGTGGATTAGATAACAATCACGACAAAAGCTATCAAATGGATCACGAAGAAGTGGAGGATTTGTTTAAGAAGCTCGACAAGAACAATGATGGAAGGATTGACCTAAATGAACTTGCGGAAGGACTGAAAAATCTGCATGGTTCAAGATACAAGGCCGGCCAAGCTCAGCAAATTATGAACCTTGGCGATCAGAACCTTGATGGGCAGATGTCATTTGAAGAGTTCGTCAAATATGTGACTGACCATCAGAAAAAATTGTGGATAGTTTTCCAGTCTATTGATCAAGATGGCAGTGGATGTGTGGATAAAACAGAACTTAAGAAAGCTTTTGAGGCCGTGGATGTTAAGGTAACAGACCAGGAAGTGgatttgttattgaaaagcATGGACAAGGACAAAACCCTTAAAGTTAACTGGAAAGAATGGAGAGAATATCACCTGTTGAATCCCAGCGGCCATAGTATGCATGACATCATTCAGTTCTGGAGACATTCTAATGTTATTGATATTGGGGAGGATATGACTGTTCCAGATGAATTCACTGAGGAGGAAAAAGTGTCAGGAATGTGGTGGAGACAGCTGGTGGCAGGGGGAGGAGCAGGAGTTGtgtCAAGGACATCGACTGCTCCTTTGGACagattaaaaGTACAAGCATCAAGCCAAAATAGAATAGGAATTTCTTCTGGTTTTTCCATGATGATCAAGGAAGGTGGaatcaaatcactttggaGAGGAAATGGTGCTAATGTGGTCAAAATTGCACCAGAATCAGCCATAAAATTCTTTGCTTATGAAAGGGCAAAGAAGCTGTTGGGTGCAGATGAAAAGCAGCTGGGGGTCAGAGAAAGACTTATGGCAGGTTCAATGGCTGGAGTAGCTTCACAGACAAGTATATACCCACTGGAGGTGTTGAAAACAAGACTGGCGCTTCGTAAGACAGGACAGTACAAGGGTCTTGTCGATGCGGCATATGTCATCTTTACTACTGAAGGAATCAGGAGTTTTTATCGAGGGCTGTTTCCGAGTCTTTTAGGAATCATTCCCTATGCTGGAATAGATCTTGCTGTATACGAGacgcTCAAAAACTTTTACCTCAACTACCACAAAAACCAGTCAGCCGACCCAGGggtgtttttattgttagcGTGTGGTACAGCGTCCAGCACGTGTGGTCAGTTAGCTAGTTATCCGTTGTCATTAGTGAGGACCAAATTACAAGCGCAAGCGCGCTCCCGCACTGCAGGCAGGGGAGATACAATGGTTTcagtaattaaaaacattataaAAGAAGACGGACCACGTGGACTTTATAGGGGACTGGCTCCTAACTTTATGAAAGTTGCGCCTGCAGTCAGTATAAGTTATGTTGTGTACGAACACTTGAGAATGAACCTTGGCGTTAGATAGAATACTCGATGGTCTGATTTGGGGCAAATGTATATCGAATGAGAGCATAATGTAAACGCGATATAAGAGTAAAAGAGAAGAATACACGACAGAGagaaaaagcttgaaaatatAGGCGGTTTTCCTGCCTGTGATAGCATAGGAAGTCTAGCAACATTAATATGGACTATTCGATTTGATATAATTGTACgaactttaattttgtttttatgaattCTCATGTTTTAAGACATTCCGTCATGGACAGCAATTTTAAAGCTGGAGTCAACATTTTGTtgtggttatttttttcaatttttgacgAGGATAACCTAAGGGTAACCCGAGAAGGTTACGAATGACTGTGACGTCTTTTTCTAACCCAATCTGAGCGCTCTAAAAGCTAGGGGACTGGATGACGTATCACTGTCATGTGGAGAGCGTAGGAATGTCACTTGCTGATTGGCTGATAATATCGCATATAAATTCATCGCATATAAATTTTCCATGGGAGTAAAATATTATGCAAGATCGTGCTTGATCATATTATATTGTtgtaaatatgtatttttttgtttaggcTTTTTGTCCCTTAAGATAAACTTTTATCTGATCTGTTGCTAGGGAGTCTTGctgagaaataatttctcgACCTTTCCTTTGATCGTtagtttttaactttaaaattttacaagaggCATGAAATTCAGAAGTTGCTTGGAAATGGCGTCTAATCTCTCCATATGATTTAAAAtctgcttaaccctttaactcccaaga

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00153 all species →	Mito_carr	Mitochondrial carrier protein	Repeat	Interproscan
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018108 all species →	Repeat	Mitochondrial substrate/solute carrier	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR023395 all species →	Homologous_superfamily	Mitochondrial carrier domain superfamily	Interproscan
IPR002067 all species →	Family	Mitochondrial carrier protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24089 all species →	SOLUTE CARRIER FAMILY 25	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005347 all species →	Molecular Function	ATP transmembrane transporter activity	Interproscan
GO:0015866 all species →	Biological Process	ADP transport	Interproscan
GO:0015867 all species →	Biological Process	ATP transport	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14684	SLC25A23S; solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.