Gene detail

Detailed information of RMX49486.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2138:25417...38843
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00023599

ATGGCGAAGACAAGGAAAAAGGCAGGTCCAGAGAAAACGGCCAAGAAATCCAACAGCAGCATGAACCCAGTGAAACTGAAGGACTTGAAGCCTACTGCTGTTCACGTTACAGTTAATTTAACTGGAAAGGACACTAGGAACAAGAAAGGAAAAATAGTGAAGCCTGCTCCCTTTCAAAGCTCTGTTGCTTCAGGAGAAGTGGCACGAGTGGCTCCAAACAGAAAATGGTTTGGAAACACAAGGGTGATATCACAAAATGCTTTGCAATCATTCCAAGATGAAATGGGAAAAGTTCTCAATGATCCGTACAAGGCATGTTGTAAATGGCTTAGTCTCATACAGTACTACAGTGTCAAAAATTTTAAACCTCCTTCTGTGAAGTACATGTATCAGCTTCACACTGACAAGAAGCAAATAAGTGTTGGCGTTATTGGTTACCCTAATGTCGGGAAGAGTTCCATCATAAACACACTGAGAGCCAAGAAAGTCTGTAACGTGGCACCAATTGCTGGGGAAACCAAGGTGTGGCAGTACGTGACACTGATGAGGCGAATCTACCTAATTGACTGCCCTGGAGTCGTGTATCCAAGTGGTGACTCGGAAACTGAGATTATACTTAAAGGCGTGGTTCGTGTTGAGAATGTGAAAGACGCAGCCTGCCACATCCCCGTTGTATTGGAACGGGTCAAGCAGGAGTACATCGCGAAGACTTACAAAGTATCATCGTGGAACGATCCAACAGACTTTCTGGAACAAGTCGCGCAACGAACTGGCAAGCTTCTCAAGGGTGGCGAAGCTGATGTCAATACAGTGGCCAAAATGATTTTGAATGATTTCCAACGTGGGAAGCTGCCATACTTTGTTGCACCACCAAATAAGGAAGGAGAATCTAACTCAGAAGAAACGAAGAATGAAAAGAAAACATCGTCTCGATTTCCACCACTTGAAGAAAGTTTTGTTAAAGAAGCAGACACTGAGGCTAAGGATAAGAAAGAAGAACTAGCTGAGAAGGAAACGAGAACAGAAAACACCAAGCAAGGAAACGAAAAAACTGCTCAAAACGGCAGCCTTTCAGTTGGCGAAGAACATAACTCCCCAACGGACCCATTGGCTGAGGCACAAACAGCTGTTGAGACAAACGATACAAATAAAACTCAGGAAAGGTGTTCGTCTGAGACCGCAAAAATTAAGTCTGGCGAGAATACAGCGATCAATGACGACTGTGTTCAGAAGTCAAAGAATGTAAAGTTACATGTGAAACAGGATTTCAGTGCCATTAACGTTGGACTTGAATATACTGGCGACGATGTGCAGCCCTTGGAAGAAGGGAAGGAACCTGATGGAAATCCTGAATTTGAGGATGAAAGTGAAGAAGAGGAAGAAGAGGAAGTTGAAGAAGAAGAAGAAGAAGAAGAAAAAGAAGAAGAGGAGGAGGATATGAGGGAGGATGAAGAGGGAGATGACGTCAGAGCAGCTTACGGGAAATACGAAGAGGAGGAGCTTGGAAGCGAAGAGGATGATGAAACGGAAGAAGAAGAAGAGCAAGAGGACGAACAAGGAAAAAATAAAAAGCAGCGACCACTTGAGAGTAATGTGAATACCAGAATGGACGAGTGTAACGAGGATAGTCATAGTGACAGTGTAGAAAATGATGATGAATCGTCGGACAATAAAAAAGAATCAGAAGAAAGGCTTGGTCCTTTGAAGGAGTCGACAGTCACGTTAGACAAGGAGACTGAAAAAAGGAAACAGAGACTGCTCGAAAAATACAAAAAGTTACAAGGTGTAGAAAAATTACCCTCTCGCCGGGCACAGGAGTGGACTACGCCCACTGATCAGCAATTCTCTGTAAGGGTAAGCCCGTACGTCGCTTGTGTTGAAGCGGAAGGAAGCGAGGAAGGCACTAAGAAACAACTTGGCAAGGAACATAATGTAAATAACACTCCACGAGCGCGTCCGGACAGATTATTAACAGCAACAAGAGAAACAAAAGTCACCAGGAAAGGTACGAAAATAGGTTTTAGAGGCACTGATAGAAGACGTGGCAAACGCAAAAGTGACGACGACAGCGAAGGTGATGAATCGCCCAAACCAAAGGCACCACGTCTGAAAACAAACAAACAGAAGATTGGTGTTCGTTACTACGAGACAGTGAATGTGAAAAACAAGAACCGTAACAAGAATGCGAAACTTCGGGAAGAACAAACGGGAAAGAAGGGAAAGAAAAGAAAATGA

Transcript

rna-pdam_00023599

ATGGCGAAGACAAGGAAAAAGGCAGGTCCAGAGAAAACGGCCAAGAAATCCAACAGCAGCATGAACCCAGTGAAACTGAAGGACTTGAAGCCTACTGCTGTTCACGTTACAGTTAATTTAACTGGAAAGGACACTAGgaacaagaaaggaaaaatagtgAAGCCTGCTCCCTTTCAAAGCTCTGTTGCTTCAGGAGAAGTGGCACGAGTGGCTCCAAACAGAAAATGGTTTGGAAACACAAGGGTGATATCACAAAATGCTTTGCAATCATTCCAAGATGAAATGGGAAAAGTTCTCAATGATCCGTACAAGGCATGTTGTAAATGGCTTAGTCTCATACAGTACTACAgtgtcaaaaattttaaacctcCTTCTGTGAAGTACATGTAtcagCTTCACACTGACAAGAAGCAAATAAGtgtTGGCGTTATTGGTTACCCTAATGTCGGGAAGAGTTCCATCATAAACACACTGAGAGCCAAGAAAGTCTGTAACGTGGCACCAATTGCTGGGGAAACCaagGTGTGGCAGTACGTGACACTGATGAGGCGAATCTACCTAATTGACTGCCCTGGAGTCGTGTATCCAAGTGGTGACTCGGAAACTGAGATTATACTTAAAGGCGTGGTTCGTGTTGAGAATGTGAAAGACGCAGCCTGCCACATCCCCGTTGTATTGGAACGGGTCAAGCAGGAGTACATCGCGAAGACTTACAAAGTATCATCGTGGAACGATCCAACAGACTTTCTGGAACAAGTCGCGCAACGAACTGGCAAGCTTCTCAAGGGTGGCGAAGCTGATGTCAATACAGTGgccaaaatgattttgaatgatttcCAACGTGGGAAGCTGCCATACTTTGTTGCACCACCAAATAAGGAAGGAGAATCTAACTCAGAAGAAAcgaagaatgaaaagaaaacatcgtCTCGATTTCCACCACttgaagaaagttttgttaaagaaGCAGACACTGAGGCTAAGGATAAGAAAGAAGAACTAGCTGAGAAGGAAACGAGAACAGAAAACACCAAGcaaggaaacgaaaaaactgCTCAAAACGGCAGCCTTTCAGTTGGCGAAGAACATAACTCCCCAACGGACCCATTGGCTGAGGCACAAACAGCTGTTGAGACAAACGATACAAATAAAACTCAGGAAAGGTGTTCGTCTGAGACCGCAAAAATTAAGTCTGGCGAGAATACAGCGATCAATGACGACTGTGTTCAGAAGTCAAAGAATGTAAAGTTACATGTGAAACAGGATTTCAGTGCCATTAACGTTGGACTTGAATATACTGGCGACGATGTGCAGCCCTTGGAAGAAGGGAAGGAACCTGATGGAAATCCTGAATTTGAGGATGAAagtgaagaagaggaagaagaggaagttgaagaagaagaagaagaagaagaaaaagaagaagaggaggaggaTATGAGGGAGGATGAAGAGGGAGATGACGTCAGAGCAGCTTACGGGAAATACGAAGAGGAGGAGCTTGGAAGCGAAGAGGATGATGAAacggaagaagaagaagagcaAGAGGAcgaacaaggaaaaaataaaaagcagcGACCACTTGAGAGTAATGTGAATACCAGAATGGACGAGTGTAACGAGGATAGTCATAGTGACAGTGtagaaaatgatgatgaatcGTCggacaataaaaaagaatcagaAGAAAGGCTTGGTCCTTTGAAGGAGTCGACAGTCACGTTAGACAAGGagactgaaaaaaggaaacagagaCTGCtcgaaaaatacaaaaagttaCAAGGTGTAGAAAAATTACCCTCTCGCCGGGCACAGGAGTGGACTACGCCCACTGATCAGCAATTCTCTGTAAGGGTAAGCCCGTACGTCGCTTGTGTTGAAGCGGAAGGAAGCGAGGAAGGCACTAAGAAACAACTTGGCAAGGAACATAATGTAAATAACACTCCACGAGCGCGTCCGGACAGATTATTAACAGCaacaagagaaacaaaagtcACCAGGAAAGGTACGAAAATAGGTTTTAGAGGCACTGATAGAAGACGTGGCAAACGCAAAAGTGACGACGACAGCGAAGGTGATGAATCGCCCAAACCAAAGGCACCACgtctgaaaacaaacaaacagaagatTGGTGTTCGTTACTACGAGACAGTGAATGTGAAAAACAAGAACCGTAACAAGAATGCGAAACTTCGGGAAGAACAAACGGGaaagaagggaaagaaaagaaaatgacctGATATGCAAACGACGATAGACTCCCAAAGACATTTGAATACAATGCTTTGGCCATGTCGCCAGGAGTCGGAATggtaatttttaagaaatttttgaggtCTGGcaaaatt

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08153 all species →	NGP1NT	NGP1NT (NUC091) domain	Domain	Interproscan
PF01926 all species →	MMR_HSR1	50S ribosome-binding GTPase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012971 all species →	Domain	Nucleolar GTP-binding protein 2, N-terminal domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR006073 all species →	Domain	GTP binding domain	Interproscan
IPR050755 all species →	Family	TRAFAC YlqF/YawG GTPases, Ribosome Maturation	Interproscan
IPR023179 all species →	Homologous_superfamily	GTP-binding protein, orthogonal bundle domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11089 all species →	GTP-BINDING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14537	NUG2, GNL2; nuclear GTP-binding protein	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.