Gene detail

Detailed information of RMX49672.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2085:627971...631808
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00003024

ATGAGCCTTTTTGGGTTTCCACAGCACATCAGAAATCCAGTTCTTCTGACGCTGAAACATGTCACCATCCAGCTTGCTGTTGGAAGTAAAACGTCCACAAAAAGACAAGACACACCACCACTTCTACTTACATCTCAATTTTCTAACCTAGTAATGTCTCAATCAGGAGATCGCCTAAAGCAGTTAGAGGAGATCGAAAAGGATGTAGTGAAAGTAATAAGGAGTGCAGGAGAAACCTTAGAAGAACTTTCGAAAGACGCACCTTCAGAAGATCGTATCAATTCAACAGCTACGAAGTTCCTAAAGTCTTTAGAGGGTGTAGAAAAAGGCCTAACTGAACAGATTGGTTACCTGACCCAAGTTGCCACTGGCCAACCACATGAAGGATCTACTTATGGAGCTGAAAAGGATTTTGAGTTATTGCGCTGCAGAACAAAAGCTATTAAAGATCAGTTGGTAGAGATTCAACGTCAAGGGACACTTCAAGTATCAGACATAAATTGATATGCGTTTCTCAAGAGACTCTTTGGTCCTCTACTCTCAGTTAGCTCTTAACTTGAGGATGCAGTGGGTGCAGTGATGCCTGTAATGATCTTCAACATTGAATCAATGGAGCCTGTGAACTTCAGTCTTGACTGAATCTATAATGTTCCAGGCCCAGTTGTGTAAAAAGCAGATAACtctatccaatggataaattaCAATCCAACCGATAAGTGATACCAAATTGTATAGCATTATTCACTGGATAGagttttatccagtggatacCAATAGCATTATCCAACTTTTGAACAACTGAGGCATGGAGTTTAGTTGTTTCAGATATTAATTAGAGAGAAAGCAAAGGTATTTTAAAGAGTCTAAGGAAGGGGTGCAGAATTATCAAGTGTCTTTAAAGCAATATCTAGTCATCCTTCTGTTTCACATGAGGATACAAGAAGATTTGGAAggagaattaagaatttaGTCAGAAGTTACACAAGGCTTTCTTTGGTGAACATGTCTTCAGTGAAAGGATGAAAATAGTctgtgatgaaaaataatgaaaagggAATGGGAGgtgaatgataaaaatagaataCAAAAATAGCAACATTTGTCTAAGAAATAACATGTGCAGACAAAGAGGAAGTAGACTTGAATAGAATGCAAATTCTGTAGGAACTTgctaaaaaagacaaagttaTTCACAATTCAGAAATCATGATGTACATGCAGTTCCAGAGCATTATGGAATAGTATGGGAATAGGGCACCTAATCAAGAGCCTTTTTCAGTGAGTTATTTACTTACTGTGTTAGTATCTGTGAACCACTTCCTGGACAGATCAATAGAGTACtgaattaaattgtttttaatcctcctcaaaaacttttttgtttttggcttaCATAAGCTGTGTATCTCTTCAGTTGAACctcatttttcaaactgtCATCTTAACTTCATGGTAAGCTAGGTAATGCGGTTCTCTGATAACACTGTGTTCCCTGTATCATGAAATTATTTAGCACATTATTTTCATAGATAATGTATTATTTAGCTCCTCATTGTTGTAATCTTAGCTACGAGAGGGATCACATCTTTTCTCTCTCAGAATTTGAGACACGCTATATTGAAGTTTACTGTTTTACAGAAATATCAAACGGCACACAACAAACTGTTACGGTTTGTCACGTTTTATCGACAAATCACTCTTTGAATTACTGTCTAATTACTATCTTTAATAATGTTTTCTTCTGGCTACAAGCCATTAACTAATTTAGATGCAATCCTTCGTGGCTTtagagtttttaaaactcttggaaattgtaaataaacccTTTAAAGCAGTAATTCCGATAGTTCTCGTCTATGATTCAAATATTTACTCTGCACTCCGGCTTTCAGAAATACTTCCCGGTTGCGGACTGAGTGACGAAGAAAGAGTTTGTCCTTTCCTTCGTACGTTCAACAGACATTTTCAAACCTCTTAATTTCCTTAACTCCTTGGCTTTGCTGGTAATTATATCGTGCTTTTCCTTTGCCTCTCTGAACTCTGCTCGAAAAGTCTTGAGGTAAAATCGCCTTTCCTCTTCCAGATGTCGTAATTCCCTTTCTAAATAGGTGTCATAAAGTCTGTTGACTTTTCGAACATATTCCTCCGCGTCTCTCGACTTTGCTGTCATTCTGTGAGAACTCCGCGGTCGTTCAcctcttattttaatattttccaacAAAGCTGATGATGTTATTAAGAAATCCTCGCgttaattttgtatttgtccACAGGTGCACTGCCTCAGAACGACCAAAAGTTTGTAGAGAACTCAGAAAATTACACATAACCGTCTCTACAGGcctaaaattaaactttttttttcttaatggtGTTC

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10280 all species →	Med11	Mediator complex protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019404 all species →	Family	Mediator complex, subunit Med11	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22890 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016592 all species →	Cellular Component	mediator complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15131	MED11; mediator of RNA polymerase II transcription subunit 11	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.