Gene detail

Detailed information of RMX49800.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2053:302198...312642
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00009135

tGTGTCTCAACAGCCGCCATATTCTTGCAATTGCCCTTAGTGCTCCTTTTTCTGTGGTACATACCTTTTCCCATCAGAATGTTTCATGCATGAGGCTTTTCCATGATTTCTCACCACAGTGACTGATAGCgttattgtaaagaaaatagcCGAGAAAGTGGTAAGAATTgttatcaaaaattgttcaaagagACATTTGGGTTTGGAACGACGCCGGTGAGCTCGCAACTGCCAAAGTTTCAGTGCTTGGAACTCATTGTAAAGGGGTGACACGCAAACAAGAATTATAACACGCTCAATATTTTGGCTGGTTTATCAGACCTGCAACCGAAGAACTTTTACTTTGGCAAAAACTGCCGAGAAGAAAGCGTTTATCAAAACGATGGCGAACACAGCTCGTGCCAGAGTCTACTCGGACGTAAATGTACACCGGCCTAGAGAGTATTGGGATTATGAATCGCATGTTATTGAATGGGGTCAACAAGATAACTATGAACTTGTTCGCAAACTGGGTAGAGGAAAATATAGTGAAGTTTTTGAAGCAATAAATGTGTCAAGTGAGGACATGGAGAAAGtggttgtaaaaattttaaagCcagttaaaaagaagaaaatcaagagagagataaaaattcTAGAGAATCTGAGGGGAGGGCCCAATATTATTAATCTTCTGGATGTTGTCAAAGATCCTGTGTCCAGGACACCTGCATTAGTTTTTGAGTATGTAAACAACACTGATTTTAAGCAACTGTACCAGAAATTTACCGATTATGACATCAGATTCTACTTATACGAACTCCTAAAGTTACGATTGATAGATTGGGGCTTGGCAGAGTTTTACCATCCTGGACAAGAATACAATGTTCGAGTGGCTTCCAGATATTTCAAAGGACCTGAATTACTGGTTGACCATCAAGAATATGACTATTCCTTGGACATGTGGAGTTTTGGTTGTATGCTGGCCAGCATGattttcagaaaagaaCCTTTCTTTCATGGGCATGACAACTATGACCAGCTTGTCAGAATTGCCAAAGTGATAGGAACAGATGAGCTGTTTGAATATATCGAGAAGTATCATATTGAATTAGACCCAAGATTCAATGACATCTTAGGGAGACATTCAAGAAAGAGATGGGAAAGATTCACGCATTCAGAGAATGAACTTCTAGTGAGCCCTGAAGCAATTGACTTGCTGGACAAACTCCTAAGATACGACATTGCGGAACGCTTGACAGCAAGGGAAGCCATGGAACATCCGTACTTCCATCCAGTGGTGAGACAGGAGCAACAGAGATTAGCGCAGACTGTTGTGTCCCCAGTGCCTATGCAGTCTAGCGGTACACCAACTCAACAGATCGTCTCGCCTTTACCGTCAGCGCCAACGTCTCCGCTACCAAATTCGACTCTTCCTGCATGACCAGATCATAACTgtaaccaaacaaaatttggcACATGGGTGTAGCTGCCGTCATAgtaattaaagagaaaaaaagaagaaaaaagaaaaagggagtGTCTCTGTGGGTCAGGTTTTCAACTTTAGATAGTTGGATTTTGTTTCGAGTGGGGGTCGTGCCATTTGAAGcgtttgtatttgtttttgtgccTACCTCAGACTTAACGGGTTGGGGATAGTTTTCCTTCAATCCGACTGGTAGTGTTGGCGCCTTAATGTAGCCTCTCCGTGGTTAAGAAAACGGTACCCAGCCGCCTCGACGAAATTTGTAACAATGAAGTCTTCGCTTTAgaactgagaaattttgaagCTTACCACTTAGGAGGACTTGTTTTAGTTTGTTGAAATTTGTATGATCTTGATATACAGTATGTCTTTAGGATTTTTGTGAATGgacgttttcaatttcatctttgtgtttgtgtgtttgtCTTAAATGACAGTGTTTTGgtgtttgtttgtctcaaGTAATGATTCAACTGTGATCTTCTCGCGTAGAAAGGCACAACTTACACTCCAAACAATTTACCAATGCTACAGGTCATTTTCCAGGAATATTAAATCTTGTGTTTCAGTAGTGAAAATCATGTATCAAACAAATACCTCTGAAGGTCCTAGTGCCATTTTacataaagatattttaaatatttataattttttccgaACTAAGTCGTCTAAGGTAAGAGGCGCACAAATTTTGAAGGACAAAAGTTTTCTCCAaccgattttctttttgttgtctcAAACTTTATGTGAGAGCCAAGTACATCATGCACACCTCTTTGAGAACAGGGTACATCACATAGAAAAGGAGTTCCGTAGTTTTGTAGATCCTTCTCTTGCTCTTGAAAATTTCGCAATGATATTGCTGCTTAGATTTTGAGCGttgtaaattattgttttatcagCAGGTTtgtgttattaaaaaaaaaaaaaaaggagttgtTGTAGTGTCCGTTGTAAAGCCAAGAACCTTCAGTTTCTGTATTCACTAAAGCTTGATACCTTTAAAGCACGCTATTTGTTGTCTCTAGCACAGTATTGGTTATCCTATTGTAATTTGGTGCGTGAATTGTTGattctttgtaaaatattatattCTTACCAAAGCAAAAAAGCGAAACTGACCTCGAACGTAGGTCTCTATTATAATAAATTTAGAGTGTTGTCAAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF07714 all species →	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045216 all species →	Family	Casein Kinase 2, subunit alpha	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR001245 all species →	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24054 all species →	CASEIN KINASE II SUBUNIT ALPHA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0005956 all species →	Cellular Component	protein kinase CK2 complex	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0018105 all species →	Biological Process	peptidyl-serine phosphorylation	Interproscan
GO:0018107 all species →	Biological Process	peptidyl-threonine phosphorylation	Interproscan
GO:0051726 all species →	Biological Process	regulation of cell cycle	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03097	CSNK2A; casein kinase II subunit alpha	EC:2.7.11.1	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.