Gene detail

Detailed information of RMX49825.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2053:1123...11788
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00009104

GACATTTCGGTCGGGGTAACCATTGAAGGTCGTAGGCCTATTTGAGAAGGTGAATTTTGTTACGTCAGCGAAAACGCTGTGAAGATCTTTTGCAGTGTTGGAAGTCACGCGACAAGGTGGTAAACGTGAGCCTTTGGATAAAGCCGTAGCGTTTCAAATAGATCTCATACCCAAAACCTAATGGCCAATGATGCATTGGAATCTGTGTCACCAAACAATGAATTTGATATACATATTAGACAAAAGGATGAACATTATCGACTGGAGAGGACATCTGGCTGTTTAGGTGGATTGTTATCAAGTGTTACTTGTCTTGAAATCAGAGGACTGTTTACTCTTGCATGGCCCACtgtgttttcttattttttctacCATTTGATCTCCATGATAACCCTGTTTTTTGCGGGACGTCTTGGAGAAGTTGAACTAGCAGCAGGGACATTAGCTATTTCATTTGTCAATGTCACGGGACCATCTTTGTTCACTGGTTTGTCTTCAGCTTTGGAGACATTAGGCTCGCAAGCTGTTGGAGCCAAGAACTATCGCATGGCAGGCATCGCATTTCAGAGAGGGATTTGGATATTGGGTATTGCATGTATATTAACCTGGGCACTCTGGATCAATGCTGAACTGCTGTTGCTGAGGGtagaacagaaaagaaatgtttcccACCTAACACAGGAGTTTACCCTTACATGCATTCCTGCTTCAATAGCTATCTTCATGTTCTTTCTATTACAAAGATATCTTCAGACCCAGGGTGTTGTGAAACCAATTCTTTATGTTGGTGCTGTCTCCAATGCTATTCAGATTGGTGTAAGTGCATTGATGGTATATGTCCTTAAATGGGGTTTCAGTGGGATTGCCATCAGCTGGTCTTTTACCAATGTGATTCTATTTTTGTCGACCTTTGTTTATATGAAGGTTATGAAGTTGGATGCAAAAACATGGCCAGGCTGGACCATAGAAAGTCTGTTAGACTGGGGACAGTTTATCAAGCTTGCTGTGGCTGGAATGGTGATGATTTGTATTGAGTGGTGGAGTTTTGAAATAGGATCATTTCTTGCAGGGTCGTATGGTGAGTACCAACTGGCCACATATGGGGTAATTTTCCAGTGGGCCGCATTTCATTTTATGATTCCTCTTGGAATAAGCATTGCCGCTGGTGTCCGTGTTGGAAATGCTTTGGGTGCTGGCGACCCAGCTGCGGCAAAAAGGACGGCGAAAGTGGCCATTGGACTTATCGTTGAAGATAAAACTCTTTTACCTACAGTCTGTATAGATCTTGTTGTGTTTGCTATTTTCTTTGGACTGCAAGACATGACTGGAAGAGTGTTTACTGATAACAGcGAAGTGTTGTCATTATACACAAAGAATATTCGCTTCATGTCTGcctattttctctttgatgGAGTCCAGGCGTCTCTATATGTGATTCTACTGTGGAAAACAGACTGGGAGAGGCAAGCACAGCTGGCGAAAGAACGAACAGCAATCAAGGCAGCGTTGTACAATGTATCAGAGACTTGGATAAATGTAGAAGTTAGCAGAAGAGAAAGAGATGCGATGCTGTTCAGCTGGATTTACAAGACCTCATCCCTTCCATTCTTAAGCCGATATCATGCCGCAAACAATCATTTTGAACTCTTGACTAGTGACGAGAACAAACGGACAGAGTACAATGGCGAACTTGAATGTAACCAAGAAGAGAGTGCCTCAGGAACAGCGTGTGATGCAAATCATCATATAAGACTAACATCATCAGAGAAAAAGTCTCTCATTCTAAAACGTCTTATTCCGTTGGGTATTTCATTGCTGATATTAGGTGCCGCCGTATTTGTCCggttttttgttcctttacCGCCTTCATATGAAACAGTGACCGTTGACAATAAGACAGTTAGTGGTAACATTACTGGTAATTTCACCACTCAAGCACCCATCccaactaatttacattagGCGATTATTTAATCTTTTTGATGCCAGTCTTTCTTCTTCAGACAGCCTTGTCTTTTATACTGAAGAGAAATGTGCTGTACGGTTGATAACGAAGATAATGCAAGACGATTTTATTTATCTACGGAATGTGTattgaaaagtattttcattaaaaaatcttaacGGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01554 all species →	MatE	MatE	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045069 all species →	Family	Multidrug and toxic compound extrusion family, eukaryotic	Interproscan
IPR002528 all species →	Family	Multi antimicrobial extrusion protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11206 all species →	MULTIDRUG RESISTANCE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0042910 all species →	Molecular Function	xenobiotic transmembrane transporter activity	Interproscan
GO:1990961 all species →	Biological Process	xenobiotic detoxification by transmembrane export across the plasma membrane	Interproscan
GO:0015297 all species →	Molecular Function	antiporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX49825.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.