Gene detail

Detailed information of RMX49901.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2032:147698...156868
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00017303

GAGTATTCTCTGACCCTACTGTAACACGTGCTCTTCACTCACTATTCTATTTCCGTACAATGAAATTTCTAGGAATTGTTGCAAATCTAGTAGCTGCTAAGAAGGAGGAAAAACTGCAATAATTTGTAACAGATTTAACCATGCTGTCTTCAAGGGTTCTACAGAGAATCACTGGTGCTTCTTCTCAGAATTTCCAGTCAAAGTTTGCCATCAGAACCATGGCATATGGCTACAgcaggacaaagaaaaaacttcctGTCAACACTgTGGTTAAATTTGTTCCTCAGCAAGAGGCTTGGATAATTGAAAGATTTGGTAAATTTAACAGAATCTTGGAACCAGGTCTTGCTATTCTCCTTCCAGTTATTGATGATATTAAATATGTGCAAAGCCTAAAGGAAATCGCCATTGAAATTCCTTCACAGTCTGCCATCACACTTGATAATGTCACTCTTCATCTTGATGGTGTGTTGTATCTGCGAGTGGTTGATCCATTCAAGGCTTCATATGGAGTGGAAGACCCAGAGTATGCTGTGACACAGTTGGCTCAGACAACCATGAGGTCTGAATTGGGTAAAATAAGTTTAGATCATGTCTTTCAAGAACGAGAAAGACTGAATCACAACATAGTAGAGGCCATCAACCATGCTGCTGAAGTTTGGGGAATAAGATGCTTGAGATATGAAATCCGGGATATTCAGCTTCCAAACACAGTAGTTGAGGCTATGCAAATGCAGGTGGAAGCTGAGAGGATGAAACGTGCTGCAGTGTTGAAATCagaagGTGAAAGAGAAGCCGCCATCAATGTCgcagaagggaaaaaacaaagtcagATTTTAGCATCTGAAGCAAGGAAGATGGAACAGATAAACATTGCTACTGGTGAAGCGAATGCAATTGTTGCAAAGGCAACAGCTCGCGCGGAAGGAATTGAAAAAGTCTCTTTGGCCCTTCAACGGCAGTTAGGTGAGAGAGCAGCTACGCTCAATGTCGCTGAACAGTACGTGAACGCATTCTCTAATCTGgctaaaacaaacaacacgGTGGTGTTACCAGCTAATGTGGGAGACGCGGGTTCAATGGTGGCACAGGCTTTGGCGGTTTATGGCCAGGTCACAGGGAAGCCTAAGAATGACCCCTCACCCCCTTCCGGTGGGTTAACCGATTCTTCAACAGATAGTGCGAGCGCAGGCGGCGACCAAACACAGAAGGGAGGTGACGGGGACACGCAAAAAGACAAATCGTCTGCTTCTGCTGCAAGAGATTTTCGGCAAGTCGAGGGTTCTCCAGCGGATTCACACATGAGATGGAACCCAGTCTCTTCAAGATCACATTTCACTGCGGCTTCTTCACCAACTCGCGCACGAGACTTTTCGTGAATTTACAATTAGTCTATCCCGCGTTGTTCACGCAATTTCATCAAGAAATCGAGCATAAAGCAGAACTGCCATGAACCCGTTCACGCTGACTTTATGCGctacatttgaataaaatttttcaggcGCAAGCTAAATAAAAGTCATTATTGAAGGACGTTCATCAGAACTAAACAAAGAAGTAATCCGGGATAAAAGACACCTTTTGGCAAGAGTACTGAAATTTCCTCTGgagatgatatttttaattttcatgatagTTCGTACCTACTTTATTAACAAGATGAAATTAACAGGGGattctttacaaatttaacaCTTGGTGCGACTAATTTGCGCGAATGGGTCGCTTGGCTACTGTTGCTCTTTGTGTTATCAGGGTAGAATCGCTGAAGAAATTTGCCACATGAAACTCTTGATTAATGTGAAAAGATGGCGCGAACGTCGCTCTAAGGTGAAGGGAGTGCCTAAACCTTTGCGACATAATAAAAGCATGCCATTATGTTGAGGattgaatttcaaacaaaatcagtTCACAAGGCTAAAGAGTTTCGTGATGAAGCGTGAGTGGTTTTTAACTGAGCTATTAGAGTAATCCGGGATTGTATAGGTAAAACCGATAAAACTTGGACGCTCGCGTTTTTACGCAACTCACATCGATTTCCTTCGTTTTataagcttcttttgttgttttccttgtcGTTTTGAACAGTTTCGAGTGCACGAAACCAAATTGAAATGGCCCAAGACCTACAAAGTACCCAATTCTTTCATTCTTGAAGGTCTCACTAGCAgttgttgtttggttttggcACCCAGCGCGCTCCCTAAAGATGTATCAACGTGTTACGACAGGTTGCCTTCATTACGTGACTGGATTAAACAGCATGACTAGTTTAAAAGGAAACGATGAGTTGGCCTGCTTTCTAACAATAATCTGCCCATCCCCAACAAGCTCTTTGCAGCTGGTGATCACATGACACTGTCagtcaaaaaattaatgaaaagctGGTCAAAAGTCTGTAGATTaagtaaaaggaaagaaaaagaaataagactGCGAAAACCCATGATTACCTCATGATAGAAATggaagtaaaattaattcagagGAAATAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16200 all species →	Band_7_C	C-terminal region of band_7	Family	Interproscan
PF01145 all species →	Band_7	SPFH domain / Band 7 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036013 all species →	Homologous_superfamily	Band 7/SPFH domain superfamily	Interproscan
IPR032435 all species →	Domain	STML2-like, C-terminal extension	Interproscan
IPR001107 all species →	Domain	Band 7 domain	Interproscan
IPR050710 all species →	Family	Band 7/mec-2 domain-containing protein	Interproscan
IPR001972 all species →	Family	Stomatin/HflK family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43327 all species →	STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0007005 all species →	Biological Process	mitochondrion organization	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26392	STOML2, SLP2; stomatin-like protein 2	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.