Gene detail

Detailed information of RMX49945.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2027:31545...49305
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00023070

ATGGCTGAAACTTTAGCCCTTTTGATTGGACCAAGTTATCCAGAAGATTTGCCAACCTACTGTGGCCCCCTGCAAGGTGTAGCAAATGATCTGCAGTTGATGAAAGACATGCTCTGTGGGAATGGATTCCAATCAGAAAACATTAAGGTCCTGGAAGGCCTTTTGGCATCACGAGAGAGCATCCTAGCTTCCTTAGAAGAATTGTCTGCAAAGGCACAAAAAGATTCCTCAAGAGATATGGCTGAAACTTTAGCCCTTTTGATTGGACCAAGTTATTCAGCAGATTTGCCAACCTACTGTGGCCCCTTGCTAGGTGTAGCAAATGATCTAAAGTTGATGAAAGACATGCTCTGTGAGAATGGATTCCAACCAGAAAACATTAAGGTTGATGACTACCACATCCTTGATACTTGTATAACAGGTGAACATTTCAAGCCTCACCTGTCCAAGTTGATTAACAAGGGGGCACTTGTCAATGTTATCTTTGATTGCTGTTTTTCTGGCCGTATCTACAGAGGTTATCCAGACACAAAACACAACAACACAGGCATTAAACAGCTTGCATTGTCTGATGAATACATCAGTGAGTATCAAAAGGTTCTAAAAGCCAGAGGGTATCCCACGGAGCATGAAGAAGAGCACTGTCCAGTTCAGGAAACACAACTGAGTTCAACAGTTACTCAGGAGACACAGCCAGCCAATCCAGCAAGTGCACCTGTGGCTCTACCCTACCCAGTCAGTGAGTTTTGGACTCCAGCTTTAAAATCAGAAGGATGGTCACCACATGAAAATGACAATTTCATTTTCATGGGNNNNNNNNNNACAAATGAAAGAGCCTATGAGTATACGGATCCTGAAACTCATGAAACCCATGGAGTCTTTACTTCTGCACTGGTAGCAGCTATCAAAGAGTTTCCACCAGGACAAAGACTCTCCTACAATATGCTTAAAAGCCTTGTAAGACGAAAGCTGGCAGATAACAATCAGCATTGTCAGACTCCACAATTTGAGGGGGGAAACATGGATTTGATACTGTTCAGTTTTGACAAAGCACCTCCACCTCCCAAATCATACAAAGTGAAGGACATTCACGTAAAGGAAGGGTTTACGGCCAGAATCACACTCGATGCTGGATTTCTACAGGGTGTTGTTGAAGGAGTCTATGACATTTATGATACTAGACTGACAATTGAAAATAAAATGGCAGATTTCCATGTGGCAACTGTTGATGTCAGGCATGAAAACATCCATGCAACAGAGTCAACTGCTGAAATGGAATTTGGCTACATGTATGAATATGTTGAAGACCAGTATATTGGCGACGTGAAACTGGCAATGGAAAGCCAGCAGATGTTCAGCATAAGAGAACAAGACACACCCGAATGTGTCAAGTTGGACGTATTGACAATCGAAGGACAAAGGTGTTGGCGTGCCATTTACTATGGTAAGATGATTGTACCGGATCAACGTACTAGGGATGGTCACCTCATGATAAAAAATCTTTGCAAGTATTTTCGTGTCAAGTTTGGAATTCGGCTCAGGGAACCCGATTACAACATGCTGAGGAATGTTAGCCTCAAGATGTTCAAAGTGGAGAACGTGCCTCCCTACAAGAGCGATATGGATAGGAAGACGCTGTTGAAAGCTCAGGCTGTTAAAACCAAGGAGATTTATGAAGGGAAACCAGAGAATTATGTTCCAACTTTTCAAGCCCACAGAGTTGAGGTTGCACCCCACACGTTTAATCGTTTAAAGTACCAGGTTGAAGATTCTTCAGGGGACGGGGGTATCAGCGGTGTGCTTAATCCTGGTGACTCAGTATCAGAGATCAGGCGCGTCTTTATCCAGCCTGAGACAGTCCGTCTCATGGGGGAGCCCAACGTTGAATTAACAAGACCTGACGGTTGTAATGACATCATTATGTTGTATGCTACCAATGCCGAGGTTGATTATCAGCCTCTGTTCCAGACTCCTTTAGAGCTCAGTCCTTATTTAAGCACTAGAGGGATTGACACACCCGATGGATTACGACTTGACACCGTCGCCAGGTTTCGAGAAGCTTTGGAGTCCGAGCCAGTTAACCGGGACATTTTGGATGGCGACGTGAAGTGGATTGCTTTGAAGCGGGAGATCAGGGTGCTATACCATCCACAACAAACCTTTGAGCCAATCGTCTATCCCAAGAAGGAAAAGGAAAAGGATTAA

Transcript

rna-pdam_00023070

ATGGCTGAAACTTTAGCCCTTTTGATTGGACCAAGTTATCCAGAAGATTTGCCAACCTACTGTGGCCCCCTGCAAGGTGTAGCAAATGATCTGCAGTTGATGAAAGACATGCTCTGTGGGAATGGATTCCAATCAGAAAACATTAAGGTCCTGGAAGGCCTTTTGGCATCACGAGAGAGCATCCTAGCTTCCTTAGAAGAATTGTCTGCAAAGGCACAAAAAGATTCCTCAAGAGATATGGCTGAAACTTTAGCCCTTTTGATTGGACCAAGTTATTCAGCAGATTTGCCAACCTACTGTGGCCCCTTGCTAGGTGTAGCAAATGATCTAAAGTTGATGAAAGACATGCTCTGTGAGAATGGATTCCAACCAGAAAACATTAAGgTTGATGACTACCACATCCTTGATACTTGTATAACAGGTGAACATTTCAAGCCTCACCTGTCCAAGTTGATTAACAAGGGGGCACTTGTCAATGTTATCTTTGATTGCTGTTTTTCTGGCCGTATCTACAGAGGTTATCCAgacacaaaacacaacaacacaGGCATTAAACAGCTTGCATTGTCTGATGAATACATCAGTGAGTATCAAAAGGTTCTAAAAGCCAGAGGGTATCCCACGGAGCATGAAGAAGAGCACTGTCCAGTTCAGGAAACACAACTGAGTTCAACAGTTACTCAgGAGACACAGCCAGCCAATCCAGCAAGTGCACCTGTGGCTCTACCCTACCCAGTCAGTGAGTTTTGGACTCCAGCTTTAAAATCAGAAGGATGGTCACCAcatgaaaatgacaatttcattttcatgggNNNNNNNNNNACAAATGAAAGAGCCTATGAGTATACGGATCCTGAAACTCATGAAACCCATGGAGTCTTTACTTCTGCACTGGTAGCAGCTATCAAAGAGTTTCCACCAGGACAAAGACTCTCCTACAATATGCTTAAAAGCCTTGTAAGACGAAAGCTGGCAGATAACAATCAGCATTGTCAGACTCCACAATTTGAGGGGGGAAACATGGATTTGATACTGTTCAGTTTTGACAAAGCACCTCCACCTCCCAAATCATACAAAGTGAAGGACATTCACGTAAAGGAAGGGTTTACGGCCAGAATCACACTCGATGCTGGATTTCTACAGGGTGTTGTTGAAGGAGTCTATGACATTTATGATACTAGACtgacaattgaaaataaaatggcaGATTTCCATGTGGCAACTGTTGATGTCAGGCATGAAAACATCCATGCAACAGAGTCAACTGCTGAAATGGAATTTGGCTACATGTATGAatATGTTGAAGACCAGTATATTGGCGACGTGAAACTGGCAATGGAAAGCCAGCAGATGTTCAGCATAAGAGAACAAGACACACCCGAATGTGTCAAGTTGGACGTATTGACAATCGAAGGACAAAGGTGTTGGCGTGCCATTTACTATGGTAAGATGATTGTACCGGATCAACGTACTAGGGATGGTCACCTCATGATAAAAAATCTTTGCAAGTATTTTCGTGTCAAGTTTGGAATTCGGCTCAGGGAACCCGATTACAACATGCTGAGGAATGTTAGCCTCAAGATGTTCAAAGTGGAGAACGTGCCTCCCTACAAGAGCGATATGGATAGGAAGACGCTGTTGAAAGCTCAGGCTGTTAAAACCAAGGAGATTTATGAAGGGAAACCAGAGAATTATGTTCCAACTTTTCAAGCCCACAGAGTTGAGGTTGCACCCCACACGTTTAATCGTTTAAAGTACCAGGTTGAAGATTCTTCAGGGGACGGGGGTATCAGCGGTGTGCTTAATCCTGGTGACTCAGTATCAGAGATCAGGCGCGTCTTTATCCAGCCTGAGACAGTCCGTCTCATGGGGGAGCCCAACGTTGAATTAACAAGACCTGACGGTTGTAATGACATCATTATGTTGTATGCTACCAATGCCGAGGTTGATTATCAGCCTCTGTTCCAGACTCCTTTAGAGCTCAGTCCTTATTTAAGCACTAGAGGGATTGACACACCCGATGGATTACGACTTGACACCGTCGCCAGGTTTCGAGAAGCTTTGGAGTCCGAGCCAGTTAACCGGGACATTTTGGATGGCGACGTGAAGTGGATTGCTTTGAAGCGGGAGATCAGGGTGCTATACCATCCACAACAAACCTTTGAGCCAATCGTCTATCccaagaaggaaaaggaaaaggattaA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00656 all species →	Peptidase_C14	Caspase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050452 all species →	Family	Metacaspase	Interproscan
IPR011600 all species →	Domain	Peptidase C14, caspase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48104 all species →	METACASPASE-4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004197 all species →	Molecular Function	cysteine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX49945.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.