Gene detail

Detailed information of RMX49977.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2015:10276...27797
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00024393

ATGGCGGCACGGAAAAAGGATGGCGCTCCTGATTGGAAATACTACGAATCTCTCGATACTATTGCTCTCTTTGAACCGGTCAAGCAGTATCTGCTGAAAAACTGTAAAAAGTATGTGCAAGTGGAACCACCTACGAATAAAGCTCTCGCTACACTTACAGCACAGCTGCTACAATTTCAAGAAGATAACTTTGGCAAGGATGTTAGCAAGCAGGCACTTTTGACTAAACTACCAATGAAGATGTTCATGGATTACTCTTCAGGTGGCAGTCTATGTGTTATCTTTGCAAATGTATTTAAGACCAAGATGGAGCAAGGATGGAGGAGATTTGACTTCCAGTCTCCATCACGAATGGATAGAAATGTGGAGCTCTTCTTGAACATGGAAAAGGCATTAAGAGAGGCTAAACTTTTGAGCGTGCCAAATGTGTTCATTACACCAGAAGTGGATCCACGACTTGCTGCCAAATTAAAGGATATTGTCAAGAGGCACAATGGTGCTATAACAGAAGACAGATCAGAAGCAAGTCATGTTGTTTATGGCCCTCCTCCACCTTTTCCCGAAGAGGAGTGGCTGAGGCCTCTGCTAAGACAAGACAAACAAGTTCTAGTACATTGGTGGTACTACCCAGACAGCTATGACACCTGGGTGCCATCAAGTGACATCGAAGATGAGCCTCAGCCAGAGCCCCAACACCAGGGACCCTGGCAGGTGAATGCTCGTTGGTTGACAGATCTTGATGTTTTCAATGAGTGGATGAATGAGGAAGATTATGAGTTAGCTGATACAGATGGCTCTGGCAACAAAAGAGAAACATCCCCAGCATTAGGAAAAACAAGAAGAAAAAGCTTAAGAACAGGTGCCAGTTCTGATGAGCAACCAGGCAGTCCTGATGGAGGGAAATCTAAGAAAAGAAAGAGATCCCCATCACCTGATCTAAAGAAGAAAAAGAAAATAGTGGGACCAGCAAATCCGAAGAAAAAATCTGGAAAAGAGGAGGAAAATGACAGTGACGATGCTACTAAAGATCTTCCTGATCCATCACCCATTCCCAATGTTGAAGAAGTCTCTGCTTCGAGTACCTCAGGCTCCAAGGGAAAAGAAGCTGATCTACAACCTTTGAAAGGAAATTCATTGACGGACATTTCAGATTCAGGAAAGCCAGAGGGTGCCGATGTGGAAGAAATGGAGACCGAAAGTCAAGCGGATACACAAGATCAACCCGAAGACAGTACAGAGCAGTCTGCGCCTGCCTCACCTTCATCCAGCCAGACGAAAGATGGAATCTTCAAAGAACCGCTTGTCCTGCAAGACACAGAAGCTCACGATGAGAACCTTACGGAGCAGACGCATCACATCATCATACCCAGTTACGCCTCTTGGTTTGACTACAACAGTGTCCACGCCATTGAAAGAAGAGCCCTGCCGGAGTTTTTCAACGGAAAAAACAAATCCAAGTCTCCTGAAGTGTATCTGGCTTGCCGAAACTTTATGCTCGATGCTTATCGACTGAATCCAACGGAATATCTGACTGCTACAGCTTGCCGGCGAAATCTATGCGGTGATGTGTGTGCGATTGTGAGGATCCATGCCTTCTTGGAGCAGTGGGGTCTGATCAATTATCAAGTAGACGCAGATGGCCGTCCGGCGCCTATGGGGCCACCTTCTACATCTCACTTCCATGTGTTAGCAGATACTCCTGCGGGTTTACAGCCTTTGCAACCTGCGAAAGCACAGATTCCTGCCTCCCAACAAATCATCCAATTCAAAGATGACCTGGGAGGAAAAGAGACTTATAAGAGCGGTGTGACAGGAGCAAACTTTGGCCTTCGTTCAGACCAGTACCTATCTAAAAAGAGTCAAAAGGCTGCAACAGCCACAAAGGAGTGGACGGAACAAGAGACACTCCTCCTTTTAGAGGGCCTGGAAATGTTCAAAGACGACTGGAACAAGGTGGCTGAACATGTCGGAACACGAACTCAAGATGAATGTATCTTGCACTTCCTTAGGCTTCCGATAGAAGACCCGTACCTTGAGGATGTACAGTTGGGTCCCTTATCACACCAGCCCACGCCGTTCAGTCAGCAGGGTAACCCTATCATGTCTACTGTAGCTTTTCTTGCTTCTGTTGTGGATCCTCGGGTCGCCAGTGCTGCTGCTAAAGCTGCTCTAGAGAAGTTCTCTGAGATGAAGGACGAGATACCGCAGTCAGTTATTGACAGCCATGTTAAGAATGCTGCAAATGCACGAGCGGAGAAAGTGAAGCAAGAAAACTCAGACGAAAGCAAAGAAGAAACACCACAACCCATGGAAGTGAATGGAAGCCAGGCAACTGTCCCCGAGGGAGGAGAGACACGAGCTCAAGATGCAAAGGCGGAAGAGTCTTCCGAGCCAAGTAGCCAAGCGCAGAACGGCGAGAAAACACCGGCTATAAACGAAGAAAACATCGCGAAGGCGGCGGCTTCAGCCCTAGCAGCCGCTGCAGTCAAAGCAAAGCATCTGGCGCAGGTTGAGGAGCGGAAGATCAAGAGTCTTGTAGCGCTTCTTGTGGAGACTCAGATGAAGAAACTGGAAATTAAACTGCGCCACTTTGAAGAACTTGAAACCATCATGGACCGTGAACGAGAAGCGTTGGAATATCAGCGTCAACAGCTACTTGCTGAACGACAACAATTCCATCAAGAACAACTGAAGGCCGCCGAGCTGCGCGCTCGAGCTTCTGCCGGTCACCTTTCCCCGTCAGCTGCCTCTCCTGCGCAGCTGCAACCACAACCACAGACATCCCAACCTCAGCTGCAGATCCCACCACAGCAGCAACAACAGCAACAACAACAACAGCAGCAGCAGGCACAGGCACATCAACAGCCAAAGCTTAGGCATTCGCAGCAAGCCCCGCCCACGGCTCCTCATCCAGGTGCCACCAGCCAAGCGCCACAAGTCGCCAGCCCCGCGCCACAAGGTAACAGTCAGCCTGGCGGATCCAATCCACCGTCCGCCTCTGCCTCACCAGCTCCAGTAATGAATCCTGGCTCTGTTCCTCAGATGGGCTCCCATCCTCATTCTGGATGCAGTACCCCGGTGTCATTCATGGGATCGAATGCTGCCTCCCCTGCATCAGCCCCGAGTACCCCCAGTAACGCCCCCTTACCTCATGCTGCCGCTGGCCAGGTCGCTCACGGGCCCGCGGACAATGCGGTTTCGAGCCCAGTTCCCCCGAACCAAAGCATGATGGATTAA

Transcript

rna-pdam_00024393

CAATAAACCAACATGGCGGCACGGAAAAAGGATGGCGCTCCTGATTGGAAATACTACGAATCTCTCGATACTATTGCTCTCTTTGAACCGGTCAAGCAGTATCTGctgaaaaactgtaaaaagTATGTGCAAGTGGAACCACCTACGAATAAAGCTCTCGCTACACTTACAGCACAGCTGCTACAATTTCAAGAAGATAACTTTGGCAAGGATGTTAGCAAGCAGGCACTTTTGACTAAACTACCAATGAAGATGTTCATGGATTACTCTTCAGGTGGCAGTCTATGTGTTATCTTTGCAAATGTATTTAAGACCAAGATGGAGCAAGGATGGAGGAGATTTGACTTCCAGTCTCCATCACGAATGGATAGAAATGTGGAGCTCTTCTTGAACATGGAAAAGGCATTAAGAGAGgCTAAACTTTTGAGCGTGCCAAATGTGTTCATTACACCAGAAGTGGATCCACGACTTGCTGCCAAATTAAAGGATATTGTCAAGAGGCACAATggtgCTATAACAGAAGACAGATCAGAAGCAAGTCATGTTGTTTATGGCCCTCCTCCACCTTTTCCCGAAgAGGAGTGGCTGAGGCCTCTGCTAAGACAAGACAAACAAGTTCTAGTACATTGGTGGTACTACCCAGACAGCTATGACACCTGGGTGCCATCAAGTGACATCGAAGATGAGCCTCAGCCAGAGCCCCAACACCAGGGACCCTGGCAGGTGAATGCTCGTTGGTTGACAGATCTTGATGTTTTCAATGAGTGGATGAATGAGGAAGATTATGAGTTAGCTGATACAGATGGCTCTggcaacaaaagagaaacatcCCCAGCATTAGgaaaaacaagaagaaaaagcttaAGAACAGGTGCCAGTTCTGATGAGcAACCAGGCAGTCCTGATGGAGGGAAatctaagaaaagaaagagatccCCATCACCTgatctaaagaagaaaaagaaaatAGTGGGACCAGCAAATCCGAAGAAAAAATCTGGAAAAGAGGAGGAAAATGACAGTGACGATGCTACTAAAGATCTTCCTGATCCATCACCCATTCCCAATGTTGAAGAAGTCTCTGCTTCGAGTACCTCAGGCTCCAAGGGAAAAGAAGCTGATCTACAacctttgaaaggaaattcatTGACGGACATTTCAGATTCAGGAAAGCCAGAGGGTGCCGATGTGGAAGAAATGGAGACCGAAAGTCAAGCGGATACACAAGATCAACCCGAAGACAGTACAGAGCAGTCTGCGCCTGCCTCACCTTCATCCAGCCAGACGAAAGATGGAATCTTCAAAGAACCGCTTGTCCTGCAAGACACAGAAGCTCACGATGAGAACCTTACGGAGCAGACGCATCACATCATCATACCCAGTTACGCCTCTTGGTTTGACTACAACAgTGTCCACGCCATTGAAAGAAGAGCCCTGCCGGAGTTTTTCAACGGAAAAAACAAATCCAAGTCTCCTGAAGTgTATCTGGCTTGCCGAAACTTTATGCTCGATGCTTATCGACTGAATCCAACGGAATATCTGACTGCTACAGCTTGCCGGCGAAATCTATGCGGTGATGTGTGTGCGATTGTGAGGATCCATGCCTTCTTGGAGCAGTGGGGTCTGATCAATTATCAAGTAGACGCAGATGGCCGTCCGGCGCCTATGGGGCCACCTTCTACATCTCACTTCCATGTGTTAGCAGATACTCCTGCGGGTTTACAGCCTTTGCAACCTGCGAAAGCACAGATTCCTGCCTCCCAACAAATCATCCAATTCAAAGATGACCTGGGAGGAAAAGAGACTTATAAGAGCGGTGTGACAGGAGCAAACTTTGGCCTTCGTTCAGACCAGTACCTATCTAAAAAGAGTCAAAAGGCTGCAACAGCCACAAAGGAGTGGACGGAACAAGAGACACTCCTCCTTTTAGAGGGCCTGGAAATGTTCAAAGACGACTGGAACAAGGTGGCTGAACATGTCGGAACACGAACTCAAGATGAATGTATCTTGCACTTCCTTAGGCTTCCGATAGAAGACCCGTACCTTGAGGATGTACAGTTGGGTCCCTTATCACACCAGCCCACGCCGTTCAGTCAGCAGGGTAACCCTATCATGTCTACTGTAGCTTTTCTTGCTTCTGTTGTGGATCCTCGGGTCGCCAGTGCTGCTGCTAAAGCTGCTCTAGAGAAGTTCTCTGAGATGAAGGACGAGATACCGCAGTCAGTTATTGACAGCCATGTTAAGAATGCTGCAAATGCACGAGCGGAGAAAGTGAAGCAAGAAAACTCAGACGAAAGCAAAGAAGAAACACCACAACCCATGGAAGTGAATGGAAGCCAGGCAACTGTCCCCGAGGGAGGAGAGACACGAGCTCAAGATGCAAAGGCGGAAGAGTCTTCCGAGCCAAGTAGCCAAGCGCAGAACGGCGAGAAAACACCGGCTATAAACGAAGAAAACATCGCGAAGGCGGCGGCTTCAGCCCTAGCAGCCGCTGCAGTCAAAGCAAAGCATCTGGCGCAGGTTGAGGAGCGGAAGATCAAGAGTCTTGTAGCGCTTCTTGTGGAGACTCAGATGAAGAAACTGGAAATTAAACTGCGCCACTTTGAAGAACTTGAAACCATCATGGACCGTGAACGAGAAGCGTTGGAATATCAGCGTCAACAGCTACTTGCTGAACGACAACAATTCCATCAAGAACAACTGAAGGCCGCCGAGCTGCGCGCTCGAGCTTCTGCCGGTCACCTTTCCCCGTCAGCTGCCTCTCCTGCGCAGCTGCAACCACAACCACAGACATCCCAACCTCAGCTGCAGATCCCACCacagcagcaacaacagcaacaacaacaacagcagcagcaggCACAGGCACATCAACAGCCAAAGCTTAGGCATTCGCAGCAAGCCCCGCCCACGGCTCCTCATCCAGGTGCCACCAGCCAAGCGCCACAAGTCGCCAGCCCCGCGCCACAAGGTAACAGTCAGCCTGGCGGATCCAATCCACCGTCCGCCTCTGCCTCACCAGCTCCAGTAATGAATCCTGGCTCTGTTCCTCAGATGGGCTCCCATCCTCATTCTGGATGCAGTACCCCGGTGTCATTCATGGGATCGAATGCTGCCTCCCCTGCATCAGCCCCGAGTACCCCCAGTAACGCCCCCTTACCTCATGCTGCCGCTGGCCAGGTCGCTCACGGGCCCGCGGACAATGCGGTTTCGAGCCCAGTTCCCCCGAACCAAAGCATGATGGATTaa

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16495 all species →	SWIRM-assoc_1	SWIRM-associated region 1	Family	Interproscan
PF16496 all species →	SWIRM-assoc_2	SWIRM-associated domain at the N-terminal	Family	Interproscan
PF16498 all species →	SWIRM-assoc_3	SWIRM-associated domain at the C-terminal	Family	Interproscan
PF00249 all species →	Myb_DNA-binding	Myb-like DNA-binding domain	Domain	Interproscan
PF04433 all species →	SWIRM	SWIRM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032451 all species →	Domain	SMARCC, C-terminal	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR032450 all species →	Domain	SMARCC, N-terminal	Interproscan
IPR049898 all species →	Domain	MarR-like, BRCT and chromo domains module	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR001005 all species →	Domain	SANT/Myb domain	Interproscan
IPR032448 all species →	Domain	SMARCC, SWIRM-associated domain	Interproscan
IPR017884 all species →	Domain	SANT domain	Interproscan
IPR007526 all species →	Domain	SWIRM domain	Interproscan
IPR036420 all species →	Homologous_superfamily	BRCT domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12802 all species →	SWI/SNF COMPLEX-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0016514 all species →	Cellular Component	SWI/SNF complex	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan
GO:0045893 all species →	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11649	SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.